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TCONS_00000387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000387
Unique NameTCONS_00000387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000387 ID=TCONS_00000387|Name=TCONS_00000387|organism=Clytia hemisphaerica|type=transcript|length=521bp
NNCCATTCACGTTGAATAGATTTACGCATGAAGATCATCGAGGAAAACGG
ACTGCAACCCCGTTAGCCCAAGCGTGACTAATATCTTACATACCACTGAC
ACACTAGATAATCGAGAACAAAACCAAGAGACTGAATCAATCTATGCACA
ACACTGAAAGATTTATGAGCTGGGATCGAGGAAGCAATCCCAACCACATG
AATATGGATGCGGACAACTAAACCAACGTGACTATTGATCCCAGGCTCTA
AATCCAGTCCTCTAAATACTCATAGAACTAAAAACTATAAATACCGGAAT
CACAAAATCATTAGGGGTTGTCGGAGAGCGTGCTGAGAGTCGGAAGCGTG
CTGGAGAGTCGAAACATGCTGGAAAGCTAGAGAGTTACGAACCGTACTAT
TAGTAAAGAGACTTGTTACTGATTTAGATCTGGAACCTTCCATAACATCA
ATTGGAGGTATTATCGTGTTATCGACTTTTTAGACAACTATATTAAGGAA
CAGTTATTTGGAGTTATTGAA
Run BLAST on NCBI

transcript from alignment at sc0000001:2846981..2847501

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000387 ID=TCONS_00000387|Name=TCONS_00000387|organism=Clytia hemisphaerica|type=transcript|length=521bp|location=Sequence derived from alignment at sc0000001:2846981..2847501 (Clytia hemisphaerica)
TTCAATAACTCCAAATAACTGTTCCTTAATATAGTTGTCTAAAAAGTCGA TAACACGATAATACCTCCAATTGATGTTATGGAAGGTTCCAGATCTAAAT CAGTAACAAGTCTCTTTACTAATAGTACGGTTCGTAACTCTCTAGCTTTC CAGCATGTTTCGACTCTCCAGCACGCTTCCGACTCTCAGCACGCTCTCCG ACAACCCCTAATGATTTTGTGATTCCGGTATTTATAGTTTTTAGTTCTAT GAGTATTTAGAGGACTGGATTTAGAGCCTGGGATCAATAGTCACGTTGGT TTAGTTGTCCGCATCCATATTCATGTGGTTGGGATTGCTTCCTCGATCCC AGCTCATAAATCTTTCAGTGTTGTGCATAGATTGATTCAGTCTCTTGGTT TTGTTCTCGATTATCTAGTGTGTCAGTGGTATGTAAGATATTAGTCACGC TTGGGCTAACGGGGTTGCAGTCCGTTTTCCTCGATGATCTTCATGCGTAA ATCTATTCAACGTGAATGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000261XLOC_000261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000387-exon-sc0000001-1491911889:2846981..2847501TCONS_00000387-exon-sc0000001-1491911889:2846981..2847501Clytia hemisphaericaexon
TCONS_00000387-exon-sc0000001-1510915933:2846981..2847501TCONS_00000387-exon-sc0000001-1510915933:2846981..2847501Clytia hemisphaericaexon
TCONS_00000387-exon-sc0000001-1575043694:2846981..2847501TCONS_00000387-exon-sc0000001-1575043694:2846981..2847501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2846981..2847501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.953872 0 1.64895 0.838942 0.199594 0.351509 2.68467 0.88729 0.495269 0.44081 1.09938 0.66473 7.07751 6.97067 0.521326 1.58996 1.24835 1.15106 7.25995 7.5448 0.489332 1.85168 0 0.62017 0 0.489693 0.570387 0.363195 0.668899 0.22046
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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