Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000386
Unique NameTCONS_00000386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000386 ID=TCONS_00000386|Name=TCONS_00000386|organism=Clytia hemisphaerica|type=transcript|length=851bp
GTGGACTTACCCTTTTGAAAACCATGTTGGTTTTTGTCAAGATATTCGTT
TTTGTCGAGAAACTTTGATAGTCGCTTGTGCATTACCTGTTCGAATATTT
TGTCAAACAGGGGTAGTACGGAGATAGGCCTGTAGTTTTTGATGTCATCT
CGAGGTCCTTTTTTAAACAGAGGGAGAACTTTTGCATGTTTTAGTGTCTC
AGGGAATACTCCACCTTTTATTGAGTGATTGATTATGTGTGAGAGTGGTT
CAGCAATTAAATCTGCAGTTGCTTTAATAATATCAATTGGAAAATCGTAT
AAATCTTTGGATTTCTTGTTGTCGAGTTTGTTAAGGAGGGTTAAGATTTC
GtatcttgttgttttttgaaaaaggaaactTGAATTGTTTTCTGGTGTTG
ATTTCGAAACATTCGAGTCAGAATTTTTCGGTAGTTTTTTAATGAGATTA
GGTGCTACTTCAGAATAGTGATTGTTGAAGGCTTGGGCAATGTTGAAATT
TCCACTGatgtttttggttttataaGTCATGGTGTTTGGATAgttagatg
ttttttttctacCAAAAAAAGCATTGATATTCTCCcagaattttttgatg
ttttttcctGTGCTCAAAAATTTGTTTCTCATGTAAAGGAACTGGCTTTT
TCTAGTCTCCTTCTTTATGTCTTGTCTAGCAACTTGATATTCTCTTTCTA
CCTCTGTGCATTTTGTTTTCATGAATTTGCCATACAGAAAGTCTTTGTAT
TGgcttttctttaaaatattttctgtgATCCAAGGTTTTTCTTGCCTTTT
CATTTCTGACTTTGTGACGAATTTGTGAGGAACATGCATTTGAAAAAGAA
G
Run BLAST on NCBI

protein sequence of TCONS_00000386-protein

>TCONS_00000386-protein ID=TCONS_00000386-protein|Name=TCONS_00000386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
LLFQMHVPHKFVTKSEMKRQEKPWITENILKKSQYKDFLYGKFMKTKCTE
VEREYQVARQDIKKETRKSQFLYMRNKFLSTGKNIKKFWENINAFFGRKK
TSNYPNTMTYKTKNISGNFNIAQAFNNHYSEVAPNLIKKLPKNSDSNVSK
STPENNSSFLFQKTTRYEILTLLNKLDNKKSKDLYDFPIDIIKATADLIA
EPLSHIINHSIKGGVFPETLKHAKVLPLFKKGPRDDIKNYRPISVLPLFD
KIFEQVMHKRLSKFLDKNEYLDKNQHGFQKGKS
Run BLAST on NCBI

transcript from alignment at sc0000001:2836817..2837667

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000386 ID=TCONS_00000386|Name=TCONS_00000386|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at sc0000001:2836817..2837667 (Clytia hemisphaerica)
CTTCTTTTTCAAATGCATGTTCCTCACAAATTCGTCACAAAGTCAGAAAT GAAAAGGCAAGAAAAACCTTGGATcacagaaaatattttaaagaaaagcC AATACAAAGACTTTCTGTATGGCAAATTCATGAAAACAAAATGCACAGAG GTAGAAAGAGAATATCAAGTTGCTAGACAAGACATAAAGAAGGAGACTAG AAAAAGCCAGTTCCTTTACATGAGAAACAAATTTTTGAGCACaggaaaaa acatcaaaaaattctgGGAGAATATCAATGCTTTTTTTGgtagaaaaaaa acatctaacTATCCAAACACCATGACttataaaaccaaaaacatCAGTGG AAATTTCAACATTGCCCAAGCCTTCAACAATCACTATTCTGAAGTAGCAC CTAATCTCATTAAAAAACTACCGAAAAATTCTGACTCGAATGTTTCGAAA TCAACACCAGAAAACAATTCAagtttcctttttcaaaaaacaacaagata CGAAATCTTAACCCTCCTTAACAAACTCGACAACAAGAAATCCAAAGATT TATACGATTTTCCAATTGATATTATTAAAGCAACTGCAGATTTAATTGCT GAACCACTCTCACACATAATCAATCACTCAATAAAAGGTGGAGTATTCCC TGAGACACTAAAACATGCAAAAGTTCTCCCTCTGTTTAAAAAAGGACCTC GAGATGACATCAAAAACTACAGGCCTATCTCCGTACTACCCCTGTTTGAC AAAATATTCGAACAGGTAATGCACAAGCGACTATCAAAGTTTCTCGACAA AAACGAATATCTTGACAAAAACCAACATGGTTTTCAAAAGGGTAAGTCCA C

Coding sequence (CDS) from alignment at sc0000001:2836817..2837667

>TCONS_00000386 ID=TCONS_00000386|Name=TCONS_00000386|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0000001:2836817..2837667 (Clytia hemisphaerica)
CTTCTTTTTCAAATGCATGTTCCTCACAAATTCGTCACAAAGTCAGAAAT
GAAAAGGCAAGAAAAACCTTGGATcacagaaaatattttaaagaaaagcC
AATACAAAGACTTTCTGTATGGCAAATTCATGAAAACAAAATGCACAGAG
GTAGAAAGAGAATATCAAGTTGCTAGACAAGACATAAAGAAGGAGACTAG
AAAAAGCCAGTTCCTTTACATGAGAAACAAATTTTTGAGCACaggaaaaa
acatcaaaaaattctgGGAGAATATCAATGCTTTTTTTGgtagaaaaaaa
acatctaacTATCCAAACACCATGACttataaaaccaaaaacatCAGTGG
AAATTTCAACATTGCCCAAGCCTTCAACAATCACTATTCTGAAGTAGCAC
CTAATCTCATTAAAAAACTACCGAAAAATTCTGACTCGAATGTTTCGAAA
TCAACACCAGAAAACAATTCAagtttcctttttcaaaaaacaacaagata
CGAAATCTTAACCCTCCTTAACAAACTCGACAACAAGAAATCCAAAGATT
TATACGATTTTCCAATTGATATTATTAAAGCAACTGCAGATTTAATTGCT
GAACCACTCTCACACATAATCAATCACTCAATAAAAGGTGGAGTATTCCC
TGAGACACTAAAACATGCAAAAGTTCTCCCTCTGTTTAAAAAAGGACCTC
GAGATGACATCAAAAACTACAGGCCTATCTCCGTACTACCCCTGTTTGAC
AAAATATTCGAACAGGTAATGCACAAGCGACTATCAAAGTTTCTCGACAA
AAACGAATATCTTGACAAAAACCAACATGGTTTTCAAAAGGGTAAGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000260XLOC_000260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000386-exon-sc0000001-1491911889:2836817..2837667TCONS_00000386-exon-sc0000001-1491911889:2836817..2837667Clytia hemisphaericaexon
TCONS_00000386-exon-sc0000001-1510915933:2836817..2837667TCONS_00000386-exon-sc0000001-1510915933:2836817..2837667Clytia hemisphaericaexon
TCONS_00000386-exon-sc0000001-1575043694:2836817..2837667TCONS_00000386-exon-sc0000001-1575043694:2836817..2837667Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000386-proteinTCONS_00000386-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2836817..2837667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123181 0 0.0719614 0 0.086238 0 0 0.0863444 0 0 0 0 0.0592792 0 0 0 0 0 0 0 0.0549175 0.0849164 0 0 0 0.41244 0.172021 0 0.0613357 0.0647446
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top