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TCONS_00000378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000378
Unique NameTCONS_00000378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000378 ID=TCONS_00000378|Name=TCONS_00000378|organism=Clytia hemisphaerica|type=transcript|length=689bp
AAAGAAGCAACTCTTCAAACCCTCACGATCCAGGACTGAAAACACtgcag
tagagtctctttaactcgatcctctataaatcgaatgtctccttatTATT
GCGGACAAGTTTTCTTGCTactcagttaacaatgccttataaacttaTCT
CCCTAGCTCGAACAATTTTGTGTTCCCCGTACGggctcgagttatggaga
atcTATTGTACTTTTCTTGGCCGATTTGTAAATACAtctgacgctctcta
attcgacgttctactattcgataggttcacttattcgatgaaatttaaaa
tccccgtcaacaagaaactctcataagcgacgctctattattcgataagc
tctcttattcgatgaaaatccaattccccttgaagatcgaattagagaga
gtcaactgtaataACAATGACCAATATTTTAAGTGGCTGGCCATGAAATG
ATGACTTAGCATTTAGGCAGTTGAGCCATTGTCTCCCCGGGGGCCACTTG
TATAACATAACAGAACAACAACTGGAACGGTAACTGATTTAGATAATAAA
TGATAAATTTCTAATTGTAAATACGAGttttgagtttgtttttaaacGAT
AAAAGGGATTGATATTGTTTCATCTCTAAGGGTAGAATGTTCCACAGATG
TCTGGTTGAGGTAATGAACGTTTGACTAACAAAGATGTT
Run BLAST on NCBI

transcript from alignment at sc0000001:2414273..2414961

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000378 ID=TCONS_00000378|Name=TCONS_00000378|organism=Clytia hemisphaerica|type=transcript|length=689bp|location=Sequence derived from alignment at sc0000001:2414273..2414961 (Clytia hemisphaerica)
AACATCTTTGTTAGTCAAACGTTCATTACCTCAACCAGACATCTGTGGAA CATTCTACCCTTAGAGATGAAACAATATCAATCCCTTTTATCgtttaaaa acaaactcaaaaCTCGTATTTACAATTAGAAATTTATCATTTATTATCTA AATCAGTTACCGTTCCAGTTGTTGTTCTGTTATGTTATACAAGTGGCCCC CGGGGAGACAATGGCTCAACTGCCTAAATGCTAAGTCATCATTTCATGGC CAGCCACTTAAAATATTGGTCATTGTtattacagttgactctctctaatt cgatcttcaaggggaattggattttcatcgaataagagagcttatcgaat aatagagcgtcgcttatgagagtttcttgttgacggggattttaaatttc atcgaataagtgaacctatcgaatagtagaacgtcgaattagagagcgtc agaTGTATTTACAAATCGGCCAAGAAAAGTACAATAgattctccataact cgagccCGTACGGGGAACACAAAATTGTTCGAGCTAGGGAGAtaagttta taaggcattgttaactgagtAGCAAGAAAACTTGTCCGCAATAataagga gacattcgatttatagaggatcgagttaaagagactctactgcaGTGTTT TCAGTCCTGGATCGTGAGGGTTTGAAGAGTTGCTTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000252XLOC_000252Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000378-exon-sc0000001-1491911889:2414273..2414961TCONS_00000378-exon-sc0000001-1491911889:2414273..2414961Clytia hemisphaericaexon
TCONS_00000378-exon-sc0000001-1510915933:2414273..2414961TCONS_00000378-exon-sc0000001-1510915933:2414273..2414961Clytia hemisphaericaexon
TCONS_00000378-exon-sc0000001-1575043694:2414273..2414961TCONS_00000378-exon-sc0000001-1575043694:2414273..2414961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2414273..2414961 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.211673 0.238502 0.401672 0.578955 0.720244 0.246206 0.0971013 0.0937429 0.191421 0.234769 0.0748827 0.0994745 1.39683 1.23223 0.168792 0.0907796 0.222185 0.313673 2.83318 4.25445 0.439808 1.06853 0.113683 0.0892156 0 0.520882 0 0 0.201507 0.253798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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