|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000375 ID=TCONS_00000375|Name=TCONS_00000375|organism=Clytia hemisphaerica|type=transcript|length=3051bp
agaaaattgaacaaaacgctaaaacaatacattgccagaccggggttttt
caTAATGACTATGGTAAAACTACAGGGTCGAAACATTTGGATTACCCGGG
ATAACCGGACAGATTTTAACGAACATTACACGCTTTATCCTGTCTTGACC
TGTTGCCTTgattatcaattttcttttagcaaaatcatttttattAACCT
GTTCTTTGTTTACTCATAGAAATAagagacaaaagaaaaattcaaatcat
aAAACAAAAAGGAAACTTAAGAACACATTATTATTGTACTTGTAAAAGAA
TACAtcgaacaacaacaacaacaaaaaaacaaagcCAAAAAGTAAACATT
CCCACGACATCAGATCCAAAGTTAAGGAGACATCATAACCGAAATTCAAA
ACGGGGAATTTAATTGCACATATCAATCGCTGTGCCAACACAACGAAGAG
CACAAAAAGGAAAGATATCCATTCCATACTAACTTGGGAGATGAACGACA
TACGAGCTCAACTAATACAACCAGACCAACAACGAACAGCAACTCCGACT
CCGACTCCGACTCCGACTCCGACGACGAATAATCTACGACATTGTTTTCA
CGTCAAATCCAAGAGTATTGACGGTGGCGATATATCACATCACAAAAGGA
TGAAATTCTCACCTCCATCACCCGTTGAATTAAACGCTAAAGGTAGTTTT
AACGAACTCGAAGGCATCAATTCAAGTCTTTGCGAAGGGTATTTGTTTAT
ACAAAGCAAAGCATTATGGATGTTCCCAAATCATTTATGGAAGAAAAGAT
ACTTCACTCTCAAAGgtgatgttttgtttttcacTAAAAGTAAAGGtgat
ttgatttttcaagaCACTACACCTGCAATTGAGATTGAAGCTGATACAGG
TATTTACCCTGAGGAAAACTtaaaaggaaaatcaaaatatttgatcCGCA
TCTGTAAAGGAAAACAAACTTTCACACTTTGTTCTGAAAGTGAAGATGAT
CGAAACACATGGTTAGCCTGTTTACTGACTGTTATCACACAGAAATATGT
AGTGAATTTCAAGGCTGGTTTTTACAAAAGCGTACGATTGAACTATAAAC
CAAATAAAGCGAAAACACACCAACGACATTCAAGTTTTATTCCGAGAAAG
GCACCAGAAGACGGCTTTGATCCAAAATTTTCCAGAATTGACGAACGTGG
TTCAATTATAATGAGCCGCACTGAGTCTTTGTTTGAAATATCACCGTCAC
AGAAAAAAGAGTTTCCGTTCCATGAGCGCCAAACTAGTTTCGTTGAAATG
CAGTGAGATGGCTAAATTTACAATGTAAAGATCGGCAGAGATAGAACAAT
GAATTTGAATATCAACGACAGATACAGAATTAAAGAATCTGAAAGCTCTG
CAGTAAATAATGTTGGGTTGGACGCGATTTTGACTGTTTGTAGTACAGTT
CAATCAGCTAATTGACACAGCATGGCTAGTTTAATTAATTGACGAAAACA
AATATGGATACTAAGCGTGTTCATTTGGCATGTTATGGTAATATAAAGTT
TCTAAAGTTATTTTGATATGACAATTTCTTATTGGTCATAAAATGTAACG
TATGTTACATCACAACTTCAAATGTGTCGCATCCGACGATGTTTATTACA
TATGGAAACTTAACTTTGCTGACGTAAACAATATTAAGTAACTTTGAAAG
TATATTGGAAACTTTTTAACGAACTTTTGACACGATTTGGTGGGAGAAGG
GAAAAACCGTCTGACATTTCTTCCTTCTTCCTCGTGGGTGATTTTAGAGA
AGAGAAACTAGATTCCAAGTTTCTAGAAACCCTAAGAAAAACAATGAGGA
AAAGGAAGTGAACAGAATTTATGACATCTTTATTGATAAACAAAAGTTga
tgatggaaaaaaaatttgaattttttaaagaacttcaTGTCTGGGTATTC
TGAATATAATGGAGAAGAAAAACAAGGCTTGTTAGCTGGATTGACAATTT
TGTGCTTTCAAAATCTAGCGGATTTTGCTGTCGGATACTACCTACcaaat
tcaaaaatcataaaatttatCTATGATTTTAACGAGTAAACTTAAAAATT
GCGTgttttaattagattttttaaattcaaggaACAGGATCTTAAAAAAC
TCGTTTAGGAATCGAAAAATGATGGCTGCCGGATAACAATTAAGATATTT
CTGATGAATTATAGCGCGGAAAAATGAGACAATAGATCATTAGGTAGCGG
TCATTAACTAAACCCatcccttcaaaaaatgtttaatgaCCCTCTTGAGG
GGAAAGAAATTACACATTTTTATAAGGatgaaaaacaatagaatttaatG
AGTGTTCTATTTAAGGGATTTTAAGCGGTTTGGCATTAAACGTATTTGAA
AAGTGTTGAGTAGGATATATTCGAATACCTTTGAAAtgagttttttcttt
tcatgCCAAAATTTCGAAATCAATTTCTAAAAACATTACCCAAATTTTGA
GAAGCCATTATAGGATTTTCATAACAACACAATTTTAGGGAATCGTAAAA
AAAAAGGGACAAAAAGGAACTTATAGTAAAAATGCTAGATAACAggtttt
attaaatattttaatgacaGTGTTAAACTTGACATGCTTGTGCTATTTTg
gatttcagaagaaaaaatataatacaaCAAAAAAGGGTCCCTGGACCAGT
TTTCCTTCTAAAGGGGGGAAATTATTCATGTAAATATAATATGCTTTTAT
AGTTATAAAACTAATGCAATTAATTTGTAATATAGTGTAAAATATAAGAT
GCCAAGAAAAAagtaattatatttttctaatattATGATATTACGTTATT
ATCTTACCTtgtaattaaaatcattataATATGGTTTTTAATGTAATGCT
AGGTTTGATAATAAGTGTAGGCTTACCTCTAATTATATCATATTGGAATG
TTTGTGTATAATATTCAACTTGTTTTATAATACATAATATTTATGTATTA
tcttattatattttttgttattatgataaaatttgaaataaaatcttgaa
a Run BLAST on NCBI protein sequence of TCONS_00000375-protein >TCONS_00000375-protein ID=TCONS_00000375-protein|Name=TCONS_00000375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MNDIRAQLIQPDQQRTATPTPTPTPTPTTNNLRHCFHVKSKSIDGGDISH
HKRMKFSPPSPVELNAKGSFNELEGINSSLCEGYLFIQSKALWMFPNHLW
KKRYFTLKGDVLFFTKSKGDLIFQDTTPAIEIEADTGIYPEENLKGKSKY
LIRICKGKQTFTLCSESEDDRNTWLACLLTVITQKYVVNFKAGFYKSVRL
NYKPNKAKTHQRHSSFIPRKAPEDGFDPKFSRIDERGSIIMSRTESLFEI
SPSQKKEFPFHERQTSFVEMQ Run BLAST on NCBI transcript from alignment at sc0000001:2378797..2381847 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000375 ID=TCONS_00000375|Name=TCONS_00000375|organism=Clytia hemisphaerica|type=transcript|length=3051bp|location=Sequence derived from alignment at sc0000001:2378797..2381847 (Clytia hemisphaerica)
tttcaagattttatttcaaattttatcataataacaaaaaatataataag
aTAATACATAAATATTATGTATTATAAAACAAGTTGAATATTATACACAA
ACATTCCAATATGATATAATTAGAGGTAAGCCTACACTTATTATCAAACC
TAGCATTACATTAAAAACCATATtataatgattttaattacaAGGTAAGA
TAATAACGTAATATCATaatattagaaaaatataattactTTTTTCTTGG
CATCTTATATTTTACACTATATTACAAATTAATTGCATTAGTTTTATAAC
TATAAAAGCATATTATATTTACATGAATAATTTCCCCCCTTTAGAAGGAA
AACTGGTCCAGGGACCCTTTTTTGttgtattatattttttcttctgaaat
ccAAAATAGCACAAGCATGTCAAGTTTAACACtgtcattaaaatatttaa
taaaaccTGTTATCTAGCATTTTTACTATAAGTTCCTTTTTGTCCCTTTT
TTTTTACGATTCCCTAAAATTGTGTTGTTATGAAAATCCTATAATGGCTT
CTCAAAATTTGGGTAATGTTTTTAGAAATTGATTTCGAAATTTTGGcatg
aaaagaaaaaactcaTTTCAAAGGTATTCGAATATATCCTACTCAACACT
TTTCAAATACGTTTAATGCCAAACCGCTTAAAATCCCTTAAATAGAACAC
TCattaaattctattgtttttcatCCTTATAAAAATGTGTAATTTCTTTC
CCCTCAAGAGGGtcattaaacattttttgaagggatGGGTTTAGTTAATG
ACCGCTACCTAATGATCTATTGTCTCATTTTTCCGCGCTATAATTCATCA
GAAATATCTTAATTGTTATCCGGCAGCCATCATTTTTCGATTCCTAAACG
AGTTTTTTAAGATCCTGTtccttgaatttaaaaaatctaattaaaacACG
CAATTTTTAAGTTTACTCGTTAAAATCATAGataaattttatgatttttg
aatttgGTAGGTAGTATCCGACAGCAAAATCCGCTAGATTTTGAAAGCAC
AAAATTGTCAATCCAGCTAACAAGCCTTGTTTTTCTTCTCCATTATATTC
AGAATACCCAGACAtgaagttctttaaaaaattcaaattttttttccatc
atcAACTTTTGTTTATCAATAAAGATGTCATAAATTCTGTTCACTTCCTT
TTCCTCATTGTTTTTCTTAGGGTTTCTAGAAACTTGGAATCTAGTTTCTC
TTCTCTAAAATCACCCACGAGGAAGAAGGAAGAAATGTCAGACGGTTTTT
CCCTTCTCCCACCAAATCGTGTCAAAAGTTCGTTAAAAAGTTTCCAATAT
ACTTTCAAAGTTACTTAATATTGTTTACGTCAGCAAAGTTAAGTTTCCAT
ATGTAATAAACATCGTCGGATGCGACACATTTGAAGTTGTGATGTAACAT
ACGTTACATTTTATGACCAATAAGAAATTGTCATATCAAAATAACTTTAG
AAACTTTATATTACCATAACATGCCAAATGAACACGCTTAGTATCCATAT
TTGTTTTCGTCAATTAATTAAACTAGCCATGCTGTGTCAATTAGCTGATT
GAACTGTACTACAAACAGTCAAAATCGCGTCCAACCCAACATTATTTACT
GCAGAGCTTTCAGATTCTTTAATTCTGTATCTGTCGTTGATATTCAAATT
CATTGTTCTATCTCTGCCGATCTTTACATTGTAAATTTAGCCATCTCACT
GCATTTCAACGAAACTAGTTTGGCGCTCATGGAACGGAAACTCTTTTTTC
TGTGACGGTGATATTTCAAACAAAGACTCAGTGCGGCTCATTATAATTGA
ACCACGTTCGTCAATTCTGGAAAATTTTGGATCAAAGCCGTCTTCTGGTG
CCTTTCTCGGAATAAAACTTGAATGTCGTTGGTGTGTTTTCGCTTTATTT
GGTTTATAGTTCAATCGTACGCTTTTGTAAAAACCAGCCTTGAAATTCAC
TACATATTTCTGTGTGATAACAGTCAGTAAACAGGCTAACCATGTGTTTC
GATCATCTTCACTTTCAGAACAAAGTGTGAAAGTTTGTTTTCCTTTACAG
ATGCGgatcaaatattttgattttccttttaAGTTTTCCTCAGGGTAAAT
ACCTGTATCAGCTTCAATCTCAATTGCAGGTGTAGTGtcttgaaaaatca
aatcaCCTTTACTTTTAgtgaaaaacaaaacatcacCTTTGAGAGTGAAG
TATCTTTTCTTCCATAAATGATTTGGGAACATCCATAATGCTTTGCTTTG
TATAAACAAATACCCTTCGCAAAGACTTGAATTGATGCCTTCGAGTTCGT
TAAAACTACCTTTAGCGTTTAATTCAACGGGTGATGGAGGTGAGAATTTC
ATCCTTTTGTGATGTGATATATCGCCACCGTCAATACTCTTGGATTTGAC
GTGAAAACAATGTCGTAGATTATTCGTCGTCGGAGTCGGAGTCGGAGTCG
GAGTCGGAGTTGCTGTTCGTTGTTGGTCTGGTTGTATTAGTTGAGCTCGT
ATGTCGTTCATCTCCCAAGTTAGTATGGAATGGATATCTTTCCTTTTTGT
GCTCTTCGTTGTGTTGGCACAGCGATTGATATGTGCAATTAAATTCCCCG
TTTTGAATTTCGGTTATGATGTCTCCTTAACTTTGGATCTGATGTCGTGG
GAATGTTTACTTTTTGgctttgtttttttgttgttgttgttgttcgaTGT
ATTCTTTTACAAGTACAATAATAATGTGTTCTTAAGTTTCCTTTTTGTTT
tatgatttgaatttttcttttgtctctTATTTCTATGAGTAAACAAAGAA
CAGGTTaataaaaatgattttgctaaaagaaaattgataatcAAGGCAAC
AGGTCAAGACAGGATAAAGCGTGTAATGTTCGTTAAAATCTGTCCGGTTA
TCCCGGGTAATCCAAATGTTTCGACCCTGTAGTTTTACCATAGTCATTAt
gaaaaaccccggtctggcaatgtattgttttagcgttttgttcaattttc
t Coding sequence (CDS) from alignment at sc0000001:2378797..2381847 >TCONS_00000375 ID=TCONS_00000375|Name=TCONS_00000375|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000001:2378797..2381847 (Clytia hemisphaerica)
TCACTGCATTTCAACGAAACTAGTTTGGCGCTCATGGAACGGAAACTCTT
TTTTCTGTGACGGTGATATTTCAAACAAAGACTCAGTGCGGCTCATTATA
ATTGAACCACGTTCGTCAATTCTGGAAAATTTTGGATCAAAGCCGTCTTC
TGGTGCCTTTCTCGGAATAAAACTTGAATGTCGTTGGTGTGTTTTCGCTT
TATTTGGTTTATAGTTCAATCGTACGCTTTTGTAAAAACCAGCCTTGAAA
TTCACTACATATTTCTGTGTGATAACAGTCAGTAAACAGGCTAACCATGT
GTTTCGATCATCTTCACTTTCAGAACAAAGTGTGAAAGTTTGTTTTCCTT
TACAGATGCGgatcaaatattttgattttccttttaAGTTTTCCTCAGGG
TAAATACCTGTATCAGCTTCAATCTCAATTGCAGGTGTAGTGtcttgaaa
aatcaaatcaCCTTTACTTTTAgtgaaaaacaaaacatcacCTTTGAGAG
TGAAGTATCTTTTCTTCCATAAATGATTTGGGAACATCCATAATGCTTTG
CTTTGTATAAACAAATACCCTTCGCAAAGACTTGAATTGATGCCTTCGAG
TTCGTTAAAACTACCTTTAGCGTTTAATTCAACGGGTGATGGAGGTGAGA
ATTTCATCCTTTTGTGATGTGATATATCGCCACCGTCAATACTCTTGGAT
TTGACGTGAAAACAATGTCGTAGATTATTCGTCGTCGGAGTCGGAGTCGG
AGTCGGAGTCGGAGTTGCTGTTCGTTGTTGGTCTGGTTGTATTAGTTGAG
CTCGTATGTCGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000375-exon-sc0000001-1491911889:2378797..2381847 | TCONS_00000375-exon-sc0000001-1491911889:2378797..2381847 | Clytia hemisphaerica | exon |
| TCONS_00000375-exon-sc0000001-1510915933:2378797..2381847 | TCONS_00000375-exon-sc0000001-1510915933:2378797..2381847 | Clytia hemisphaerica | exon |
| TCONS_00000375-exon-sc0000001-1575043694:2378797..2381847 | TCONS_00000375-exon-sc0000001-1575043694:2378797..2381847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2378797..2381847 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
