TCONS_00000373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000373
Unique NameTCONS_00000373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000373 ID=TCONS_00000373|Name=TCONS_00000373|organism=Clytia hemisphaerica|type=transcript|length=236bp
GAACCATGGTATGAATAAAGTTTGAAACAAGGAACTAAACacattcaatg
atgtatccatTATGAGTCTTAAAtccagtggaaatctagtctttGATGAA
TCGTGGCACTTCATGGCGCCAGGAGGCGATCCTGGGAAATTGAGTAAAAC
TATGCATGATTGACGTTCAACCTGAAGACACGTTTCCCTAAGATCAACAC
TGAAATTCAACTGTAAATGATATAAACAGATTTGAG
Run BLAST on NCBI

transcript from alignment at sc0000001:2305943..2306178

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000373 ID=TCONS_00000373|Name=TCONS_00000373|organism=Clytia hemisphaerica|type=transcript|length=236bp|location=Sequence derived from alignment at sc0000001:2305943..2306178 (Clytia hemisphaerica)
CTCAAATCTGTTTATATCATTTACAGTTGAATTTCAGTGTTGATCTTAGG
GAAACGTGTCTTCAGGTTGAACGTCAATCATGCATAGTTTTACTCAATTT
CCCAGGATCGCCTCCTGGCGCCATGAAGTGCCACGATTCATCaaagacta
gatttccactggaTTTAAGACTCATAatggatacatcattgaatgtGTTT
AGTTCCTTGTTTCAAACTTTATTCATACCATGGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000247XLOC_000247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000373-exon-sc0000001-1491911889:2305943..2306178TCONS_00000373-exon-sc0000001-1491911889:2305943..2306178Clytia hemisphaericaexon
TCONS_00000373-exon-sc0000001-1510915933:2305943..2306178TCONS_00000373-exon-sc0000001-1510915933:2305943..2306178Clytia hemisphaericaexon
TCONS_00000373-exon-sc0000001-1575043694:2305943..2306178TCONS_00000373-exon-sc0000001-1575043694:2305943..2306178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2305943..2306178 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.17914	5.9418	7.57174	0	83.4371	62.9292	57.4792	90.5581	54.4929	77.1699	83.0338	58.8602	44.894	22.9032	19.4055	38.0072	32.6236	16.1688	26.4975	19.2209	9.90746	14.0226	12.5802	9.24081	22.8009	44.8969	29.3548	14.0153	24.7337	21.0503
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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