|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000365 ID=TCONS_00000365|Name=TCONS_00000365|organism=Clytia hemisphaerica|type=transcript|length=1871bp
ggggagggaaacttgcatagccatcaaatgactgaccaatcaaagcagca
aaatttcaaaacaaataaactacgcagctccgctcgcagatctactctac
catttttcttttgatttaactttgtattttaaggaccagacaggtcattc
atttgagggctatgcatgtttgcctccactgatgcaagttacccgacttc
acggtactttGTTCTTCTATAAAAATGTGtgtgtaatagaccttttcata
aattacgttgcgaacatcgcttgcctcgtttcaaaattattgccatggtg
attaactccctgCGGATtttaaactactttctattcataaaaaaatcata
taatGTATCGAGGGACATagtcaccatggtaattgtttgaatacgaggca
actgatgttcgtgacgtaatttatgaaaaggtctattggtttCTTGATTC
CGACTGTCTCGattaatttcttcattttcaatttcaacatgttgttgctt
attaaaaagctgttttgagttattttttttcGTTAATAGTATTTGAGTAA
ACATTTAGTACCTAGTAAGTATTTGtcatcttttttaaaaagctcatttt
tccaattttgaagaAGAATTTTCTTCGTACAAAATGCTGTTATTGAGTTT
TGACAAATCGAGACTGCTTTTTTTATCTCGTTTAACCAAACTTATTTAAC
AGTCTTTCCTATTCGAGGTTTTCgaatttgaaaatggaaatttgaaCGAC
TCTTGTATAAAAGAATCTTATATATTTTATTGATACGTGTGCGCGCGCCA
TTCTCTTTGTGTCATTGACCGCCCGCGCGGCCATGTTTTTCAGTTGAAAA
AATTGTTCGCTAAGAATGATCAATCATAATGAAGTACTACAAATAATTTT
AATTCCTAACTGCAGGTCTGTGTATCTAGAGAATGGCGTGTAAGCTATTT
AAAGGCAAAGTTCGGGATCATTTTCGATTCGCAACCGAAAAATCAAGCTT
AGTCAATAAGCTAACTTTCGATTTCTCGCCTCTTTCAAACCTTATAATTT
TACACATTCGATTGCGTTAACTTGATTTTTGGTGGTGAAGTAAATGGACC
TTTACTCGTGAATGTAAGCTAAAGGTCCGATTACACTTGAACAAATGTTG
CGACCATTTTTCATCATTCGGTTGTATGTTTTAGTTCGTGTAATTGGGGG
TTTAAGTTTATGGATGGAATAgagattttttgcataaaaaagtaaatagt
agaaaagacatttttatattattagagatttttttcattaattttttgat
tGGTGTGATATACATTATAACGTTCTATTTTCTCGGCTCTCGGCCAATTC
GTTTGTCTAATTAgcgctttttatgattttgaagcTTTTACCCAATTTTA
CTGGGATatgataattttcattttttgaaaaagagtaaaaaaacaCTTGC
TAATTAGTTTTTGTATTGAAAAAGGTCCAATAATTATATTTAGCTAAAAT
GTTctgaaaattcaagaaaattttttatgaaggTTTTTTCCTGTGGAGAG
AAGATGAGCGTTAGGATGTATTTTGTGTTATGAAATGGCAAGGATTAGTT
TAGTTTGAAAGAAACGGAATTATTCCAAACATTTTTGATTGTCTTTTGGA
AACCAAACGTAATTGATTTTTTGTCTCAAGTCTGTACGGATTTAAACTAA
CTTCAAAAGCACTGTTTTAAGTTCCACTGAAAGTGGACATTTATTTTTAG
AAGATCCTTGCTAATTTCATACCTAAACAACCATAGGAATTTAATACATT
TTAGTAGTAGTATTTTTAGGATtcgtttttaatttgaaaaagaaaacctc
GTCGTAATATCTATGACGTAT Run BLAST on NCBI transcript from alignment at sc0000001:2010836..2012706 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000365 ID=TCONS_00000365|Name=TCONS_00000365|organism=Clytia hemisphaerica|type=transcript|length=1871bp|location=Sequence derived from alignment at sc0000001:2010836..2012706 (Clytia hemisphaerica)
ATACGTCATAGATATTACGACgaggttttctttttcaaattaaaaacgaA
TCCTAAAAATACTACTACTAAAATGTATTAAATTCCTATGGTTGTTTAGG
TATGAAATTAGCAAGGATCTTCTAAAAATAAATGTCCACTTTCAGTGGAA
CTTAAAACAGTGCTTTTGAAGTTAGTTTAAATCCGTACAGACTTGAGACA
AAAAATCAATTACGTTTGGTTTCCAAAAGACAATCAAAAATGTTTGGAAT
AATTCCGTTTCTTTCAAACTAAACTAATCCTTGCCATTTCATAACACAAA
ATACATCCTAACGCTCATCTTCTCTCCACAGGAAAAAAccttcataaaaa
attttcttgaattttcagAACATTTTAGCTAAATATAATTATTGGACCTT
TTTCAATACAAAAACTAATTAGCAAGtgtttttttactctttttcaaaaa
atgaaaattatcatATCCCAGTAAAATTGGGTAAAAgcttcaaaatcata
aaaagcgcTAATTAGACAAACGAATTGGCCGAGAGCCGAGAAAATAGAAC
GTTATAATGTATATCACACCaatcaaaaaattaatgaaaaaaatctctaa
taatataaaaatgtcttttctactatttacttttttatgcaaaaaatctc
TATTCCATCCATAAACTTAAACCCCCAATTACACGAACTAAAACATACAA
CCGAATGATGAAAAATGGTCGCAACATTTGTTCAAGTGTAATCGGACCTT
TAGCTTACATTCACGAGTAAAGGTCCATTTACTTCACCACCAAAAATCAA
GTTAACGCAATCGAATGTGTAAAATTATAAGGTTTGAAAGAGGCGAGAAA
TCGAAAGTTAGCTTATTGACTAAGCTTGATTTTTCGGTTGCGAATCGAAA
ATGATCCCGAACTTTGCCTTTAAATAGCTTACACGCCATTCTCTAGATAC
ACAGACCTGCAGTTAGGAATTAAAATTATTTGTAGTACTTCATTATGATT
GATCATTCTTAGCGAACAATTTTTTCAACTGAAAAACATGGCCGCGCGGG
CGGTCAATGACACAAAGAGAATGGCGCGCGCACACGTATCAATAAAATAT
ATAAGATTCTTTTATACAAGAGTCGttcaaatttccattttcaaattcGA
AAACCTCGAATAGGAAAGACTGTTAAATAAGTTTGGTTAAACGAGATAAA
AAAAGCAGTCTCGATTTGTCAAAACTCAATAACAGCATTTTGTACGAAGA
AAATTCTtcttcaaaattggaaaaatgagctttttaaaaaagatgaCAAA
TACTTACTAGGTACTAAATGTTTACTCAAATACTATTAACgaaaaaaaat
aactcaaaacagctttttaataagcaacaacatgttgaaattgaaaatga
agaaattaatCGAGACAGTCGGAATCAAGaaaccaatagaccttttcata
aattacgtcacgaacatcagttgcctcgtattcaaacaattaccatggtg
actATGTCCCTCGATACattatatgatttttttatgaatagaaagtagtt
taaaATCCGcagggagttaatcaccatggcaataattttgaaacgaggca
agcgatgttcgcaacgtaatttatgaaaaggtctattacacaCACATTTT
TATAGAAGAACaaagtaccgtgaagtcgggtaacttgcatcagtggaggc
aaacatgcatagccctcaaatgaatgacctgtctggtccttaaaatacaa
agttaaatcaaaagaaaaatggtagagtagatctgcgagcggagctgcgt
agtttatttgttttgaaattttgctgctttgattggtcagtcatttgatg
gctatgcaagtttccctcccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000365-exon-sc0000001-1491911889:2010836..2012706 | TCONS_00000365-exon-sc0000001-1491911889:2010836..2012706 | Clytia hemisphaerica | exon |
| TCONS_00000365-exon-sc0000001-1510915933:2010836..2012706 | TCONS_00000365-exon-sc0000001-1510915933:2010836..2012706 | Clytia hemisphaerica | exon |
| TCONS_00000365-exon-sc0000001-1575043694:2010836..2012706 | TCONS_00000365-exon-sc0000001-1575043694:2010836..2012706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2010836..2012706 . |
Blast
The following BLAST results are available for this feature:
|
