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TCONS_00000356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000356
Unique NameTCONS_00000356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1067

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000356 ID=TCONS_00000356|Name=TCONS_00000356|organism=Clytia hemisphaerica|type=transcript|length=1067bp
CAAAGATCAAATCTCTCTCGATGTGCAAGAACTCAACTTCGCCAAAAAAT
CACGAGGTCGCAAACCAACACTTGTATCTACGGTACCTGAGAACCTAACT
CGACGACAATGCGTGGCCAAGGTAGCTGAACTCTACGACATCACTGGTTT
AATCACACCGATTGTTGCCACCATGAAACTAGATCTTCACGACCTTGTCA
CTCGGAAATTGGATTGGGATGATGCTCTTCCCGATAACATCCGGACCATT
TGGCTTGACCATTTCGATATGATGAATGAAATCAAACAAATCAAGTATCC
AAGAGCCGTTGTACCAGAAGATGCTGCAAGTTTAGACATTCAGACGCTTG
ACTTTGGGGATGCAAGCAAAAGCCTCATTTGTGTCGCTATATATGTTCGA
TTCATGAAGAAGGATGGATCATTCTCCTGTCAATTCATCTTTGGTAGATC
CAAACTCATTTCAGATGAATACACTCAACCACGTGCAGAGCTATATGCAG
CGATGATCAATGCACACTCTGGTCATACAATCAAACAAGCCCTGAAGGAT
AAACACAAGTCGAGCATCAAATTTACAGATTCTCAGATCAGTCTCTATTG
GATTTGTAACCTTCACCTGAATTTAAAGCAATGGACAAGAAACAGAGTAT
CTGAAGTCCACAGATTTACAGACACATCCCAATGGAAATATGTCAGATCA
GAGGACATGATTGCAGACTTGGGCACTAGAAGATGCACAGCCATCCAAGA
TGTCGACCAACATTCAAAGTGGATCAACGGATATGAATGGATGAGAAGCA
ACCCTTCGGACTTCCCAGCCAAGACTACTACTGACATCTCACTGACAGCG
CAAGAGAAACAACATCTTAAGAAAGAGTCAAGAGAAGAAGTACACAAGGA
AGGTATCGAATGCTACATATCCTCAACCAAGTCGATGATTCCAGAAGCCG
TTTCAAATCACTACAAATACTCAAATTATTTGATCGACCCCAATTGGAGA
AATTTCAACCATGTAATCAGAGTGATGGCTTACGTACTTAAATTCATCAA
tagcttcaaaaaatttc
Run BLAST on NCBI

protein sequence of TCONS_00000356-protein

>TCONS_00000356-protein ID=TCONS_00000356-protein|Name=TCONS_00000356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
KDQISLDVQELNFAKKSRGRKPTLVSTVPENLTRRQCVAKVAELYDITGL
ITPIVATMKLDLHDLVTRKLDWDDALPDNIRTIWLDHFDMMNEIKQIKYP
RAVVPEDAASLDIQTLDFGDASKSLICVAIYVRFMKKDGSFSCQFIFGRS
KLISDEYTQPRAELYAAMINAHSGHTIKQALKDKHKSSIKFTDSQISLYW
ICNLHLNLKQWTRNRVSEVHRFTDTSQWKYVRSEDMIADLGTRRCTAIQD
VDQHSKWINGYEWMRSNPSDFPAKTTTDISLTAQEKQHLKKESREEVHKE
GIECYISSTKSMIPEAVSNHYKYSNYLIDPNWRNFNHVIRVMAYVLKFIN
SFKKF
Run BLAST on NCBI

transcript from alignment at sc0000001:1858761..1859827

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000356 ID=TCONS_00000356|Name=TCONS_00000356|organism=Clytia hemisphaerica|type=transcript|length=1067bp|location=Sequence derived from alignment at sc0000001:1858761..1859827 (Clytia hemisphaerica)
gaaattttttgaagctaTTGATGAATTTAAGTACGTAAGCCATCACTCTG ATTACATGGTTGAAATTTCTCCAATTGGGGTCGATCAAATAATTTGAGTA TTTGTAGTGATTTGAAACGGCTTCTGGAATCATCGACTTGGTTGAGGATA TGTAGCATTCGATACCTTCCTTGTGTACTTCTTCTCTTGACTCTTTCTTA AGATGTTGTTTCTCTTGCGCTGTCAGTGAGATGTCAGTAGTAGTCTTGGC TGGGAAGTCCGAAGGGTTGCTTCTCATCCATTCATATCCGTTGATCCACT TTGAATGTTGGTCGACATCTTGGATGGCTGTGCATCTTCTAGTGCCCAAG TCTGCAATCATGTCCTCTGATCTGACATATTTCCATTGGGATGTGTCTGT AAATCTGTGGACTTCAGATACTCTGTTTCTTGTCCATTGCTTTAAATTCA GGTGAAGGTTACAAATCCAATAGAGACTGATCTGAGAATCTGTAAATTTG ATGCTCGACTTGTGTTTATCCTTCAGGGCTTGTTTGATTGTATGACCAGA GTGTGCATTGATCATCGCTGCATATAGCTCTGCACGTGGTTGAGTGTATT CATCTGAAATGAGTTTGGATCTACCAAAGATGAATTGACAGGAGAATGAT CCATCCTTCTTCATGAATCGAACATATATAGCGACACAAATGAGGCTTTT GCTTGCATCCCCAAAGTCAAGCGTCTGAATGTCTAAACTTGCAGCATCTT CTGGTACAACGGCTCTTGGATACTTGATTTGTTTGATTTCATTCATCATA TCGAAATGGTCAAGCCAAATGGTCCGGATGTTATCGGGAAGAGCATCATC CCAATCCAATTTCCGAGTGACAAGGTCGTGAAGATCTAGTTTCATGGTGG CAACAATCGGTGTGATTAAACCAGTGATGTCGTAGAGTTCAGCTACCTTG GCCACGCATTGTCGTCGAGTTAGGTTCTCAGGTACCGTAGATACAAGTGT TGGTTTGCGACCTCGTGATTTTTTGGCGAAGTTGAGTTCTTGCACATCGA GAGAGATTTGATCTTTG

Coding sequence (CDS) from alignment at sc0000001:1858761..1859827

>TCONS_00000356 ID=TCONS_00000356|Name=TCONS_00000356|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at sc0000001:1858761..1859827 (Clytia hemisphaerica)
aaattttttgaagctaTTGATGAATTTAAGTACGTAAGCCATCACTCTGA
TTACATGGTTGAAATTTCTCCAATTGGGGTCGATCAAATAATTTGAGTAT
TTGTAGTGATTTGAAACGGCTTCTGGAATCATCGACTTGGTTGAGGATAT
GTAGCATTCGATACCTTCCTTGTGTACTTCTTCTCTTGACTCTTTCTTAA
GATGTTGTTTCTCTTGCGCTGTCAGTGAGATGTCAGTAGTAGTCTTGGCT
GGGAAGTCCGAAGGGTTGCTTCTCATCCATTCATATCCGTTGATCCACTT
TGAATGTTGGTCGACATCTTGGATGGCTGTGCATCTTCTAGTGCCCAAGT
CTGCAATCATGTCCTCTGATCTGACATATTTCCATTGGGATGTGTCTGTA
AATCTGTGGACTTCAGATACTCTGTTTCTTGTCCATTGCTTTAAATTCAG
GTGAAGGTTACAAATCCAATAGAGACTGATCTGAGAATCTGTAAATTTGA
TGCTCGACTTGTGTTTATCCTTCAGGGCTTGTTTGATTGTATGACCAGAG
TGTGCATTGATCATCGCTGCATATAGCTCTGCACGTGGTTGAGTGTATTC
ATCTGAAATGAGTTTGGATCTACCAAAGATGAATTGACAGGAGAATGATC
CATCCTTCTTCATGAATCGAACATATATAGCGACACAAATGAGGCTTTTG
CTTGCATCCCCAAAGTCAAGCGTCTGAATGTCTAAACTTGCAGCATCTTC
TGGTACAACGGCTCTTGGATACTTGATTTGTTTGATTTCATTCATCATAT
CGAAATGGTCAAGCCAAATGGTCCGGATGTTATCGGGAAGAGCATCATCC
CAATCCAATTTCCGAGTGACAAGGTCGTGAAGATCTAGTTTCATGGTGGC
AACAATCGGTGTGATTAAACCAGTGATGTCGTAGAGTTCAGCTACCTTGG
CCACGCATTGTCGTCGAGTTAGGTTCTCAGGTACCGTAGATACAAGTGTT
GGTTTGCGACCTCGTGATTTTTTGGCGAAGTTGAGTTCTTGCACATCGAG
AGAGATTTGATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000230XLOC_000230Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000356-proteinTCONS_00000356-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000356-exon-sc0000001-1491911889:1858761..1859827TCONS_00000356-exon-sc0000001-1491911889:1858761..1859827Clytia hemisphaericaexon
TCONS_00000356-exon-sc0000001-1510915933:1858761..1859827TCONS_00000356-exon-sc0000001-1510915933:1858761..1859827Clytia hemisphaericaexon
TCONS_00000356-exon-sc0000001-1575043694:1858761..1859827TCONS_00000356-exon-sc0000001-1575043694:1858761..1859827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1858761..1859827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0925 13.024 11.3299 7.00801 3.34571 2.95228 3.18967 3.33451 1.46346 4.10023 1.84327 2.864 2.14501 2.11338 1.22094 2.06616 2.11077 1.90895 3.20874 5.38154 1.87901 1.98903 0.995617 2.84479 5.01663 3.40744 1.13396 2.05733 4.13051 2.99259
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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