TCONS_00000352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000352
Unique NameTCONS_00000352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000352 ID=TCONS_00000352|Name=TCONS_00000352|organism=Clytia hemisphaerica|type=transcript|length=828bp
GTTTGTTCTGCGTCATGAGAAATCCTCCATTATTCAAATGAAGTTGTACA
TTAATATCCGAAACGATATTTAAAGTTATTTATTANaaaaaaaaaaaatc
ttattcatAAATAATGACATTTAAATTATTACTGACAAAACTGAcaaatt
tatttacaaaattgacGGCGCTAAAAACGAAATACTTTAATTCATTTTGT
ACGTTTGTTCTGCGTTATGAGAAATCCTTCATTATTCAAATGAAGTTGTA
CATTAATATCCAAAACGTATTatttaaagttattttcgatcattattcaa
tatttttgttattttcatttcatctttTTGTGGATGCGATTCAACCGTGC
TGATAATTGCTTTCATCCAGAGTTTTAAAGATTTGTCTGTTAAAAGATCT
TCTGGATAAACGGTGATTAAGCTATCAGAATAATCGATATCGTCCAAGGA
GCAGAACTTTAAATCCGGTAAATCTCGGTCCGAAATTGCCTGGGCTTGGA
CGACTTCAAAGCCAAGCTTTTGATACAAAGGCATCGCTGATGCATTTTCA
TCTCCTTTCATCAACACAAAGAACTTTGTACCATCGAGTTgcaataattt
ctttttcagaaaaaccatCAGTTGAAAAAGTGCATCTGTGTCTTCCTTTA
TCAAGAAATcactcaaaaaaatttccaagtttgattcaaaataaatagtt
aaattttgaattgtatttggGAAACGGGTATCTGGTAGAAGCGTGTTTGA
GTGATATTCAAATCGATTGAAGTTCGGATTTCTAAGCAATCCTAAAAGAC
TTTGGAAGCAAATAGGAACACCATTATG
Run BLAST on NCBI

protein sequence of TCONS_00000352-protein

>TCONS_00000352-protein ID=TCONS_00000352-protein|Name=TCONS_00000352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
HNGVPICFQSLLGLLRNPNFNRFEYHSNTLLPDTRFPNTIQNLTIYFESN
LEIFLSDFLIKEDTDALFQLMVFLKKKLLQLDGTKFFVLMKGDENASAMP
LYQKLGFEVVQAQAISDRDLPDLKFCSLDDIDYSDSLITVYPEDLLTDKS
LKLWMKAIISTVESHPQKDEMKITKILNNDRK
Run BLAST on NCBI

transcript from alignment at sc0000001:1658895..1659722

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000352 ID=TCONS_00000352|Name=TCONS_00000352|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at sc0000001:1658895..1659722 (Clytia hemisphaerica)
CATAATGGTGTTCCTATTTGCTTCCAAAGTCTTTTAGGATTGCTTAGAAA
TCCGAACTTCAATCGATTTGAATATCACTCAAACACGCTTCTACCAGATA
CCCGTTTCccaaatacaattcaaaatttaactatttattttgaatcaaac
ttggaaatttttttgagtgATTTCTTGATAAAGGAAGACACAGATGCACT
TTTTCAACTGatggtttttctgaaaaagaaattattgcAACTCGATGGTA
CAAAGTTCTTTGTGTTGATGAAAGGAGATGAAAATGCATCAGCGATGCCT
TTGTATCAAAAGCTTGGCTTTGAAGTCGTCCAAGCCCAGGCAATTTCGGA
CCGAGATTTACCGGATTTAAAGTTCTGCTCCTTGGACGATATCGATTATT
CTGATAGCTTAATCACCGTTTATCCAGAAGATCTTTTAACAGACAAATCT
TTAAAACTCTGGATGAAAGCAATTATCAGCACGGTTGAATCGCATCCACA
Aaaagatgaaatgaaaataacaaaaatattgaataatgatcgaaaataac
tttaaatAATACGTTTTGGATATTAATGTACAACTTCATTTGAATAATGA
AGGATTTCTCATAACGCAGAACAAACGTACAAAATGAATTAAAGTATTTC
GTTTTTAGCGCCgtcaattttgtaaataaatttgTCAGTTTTGTCAGTAA
TAATTTAAATGTCATTATTTatgaataagattttttttttttNTAATAAA
TAACTTTAAATATCGTTTCGGATATTAATGTACAACTTCATTTGAATAAT
GGAGGATTTCTCATGACGCAGAACAAAC

Coding sequence (CDS) from alignment at sc0000001:1658895..1659722

>TCONS_00000352 ID=TCONS_00000352|Name=TCONS_00000352|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0000001:1658895..1659722 (Clytia hemisphaerica)
CATAATGGTGTTCCTATTTGCTTCCAAAGTCTTTTAGGATTGCTTAGAAA
TCCGAACTTCAATCGATTTGAATATCACTCAAACACGCTTCTACCAGATA
CCCGTTTCccaaatacaattcaaaatttaactatttattttgaatcaaac
ttggaaatttttttgagtgATTTCTTGATAAAGGAAGACACAGATGCACT
TTTTCAACTGatggtttttctgaaaaagaaattattgcAACTCGATGGTA
CAAAGTTCTTTGTGTTGATGAAAGGAGATGAAAATGCATCAGCGATGCCT
TTGTATCAAAAGCTTGGCTTTGAAGTCGTCCAAGCCCAGGCAATTTCGGA
CCGAGATTTACCGGATTTAAAGTTCTGCTCCTTGGACGATATCGATTATT
CTGATAGCTTAATCACCGTTTATCCAGAAGATCTTTTAACAGACAAATCT
TTAAAACTCTGGATGAAAGCAATTATCAGCACGGTTGAATCGCATCCACA
Aaaagatgaaatgaaaataacaaaaatattgaataatgatcgaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000226XLOC_000226Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000352-exon-sc0000001-1491911889:1658895..1659722TCONS_00000352-exon-sc0000001-1491911889:1658895..1659722Clytia hemisphaericaexon
TCONS_00000352-exon-sc0000001-1510915933:1658895..1659722TCONS_00000352-exon-sc0000001-1510915933:1658895..1659722Clytia hemisphaericaexon
TCONS_00000352-exon-sc0000001-1575043694:1658895..1659722TCONS_00000352-exon-sc0000001-1575043694:1658895..1659722Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000352-proteinTCONS_00000352-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1658895..1659722 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84423	1.42028	1.31174	1.40269	0.710059	0.515675	1.89583	1.69782	1.74133	1.67818	0.863426	1.93617	2.20996	1.95086	8.09254	6.40168	0.41079	1.41364	2.83474	2.52224	0.30369	0.65705	1.39008	1.08118	0.123072	0.245087	0.630817	0.167746	0.598028	1.83286
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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