TCONS_00000346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000346
Unique NameTCONS_00000346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000346 ID=TCONS_00000346|Name=TCONS_00000346|organism=Clytia hemisphaerica|type=transcript|length=390bp
TCGTAATCTTCCTGGTTATAAGGAACCAATACCTGGGGACAACGAAGAAC
CTGCTAGTTACTCCAGAAATCACGAATTTATCATCCAACAATCTGGCCCA
GCTGTGAATATTAAGATCATTGAGAGAGAACCAGAAAGGTATCTATTAGC
AGATTTGACTTATGCGGTTCAATGCAAAGAGTGGCCAGCCATATCAAACT
GGTTCATACGGTGCAGGAAATGGCCGAGTTGTGAAGACGTCACGCAGATA
GTAAAATTAGGGTTTCATCTCGTGCCAAAATCCAAtacaaatgataaaaa
gaaattaaCATGGCGTTTTTCCTTTTCTATTGCGGAAATTGAGCTCTCAA
AGTTGTTAAAACCGACCGCTCGAAAATGTTTTATTGCTAT
Run BLAST on NCBI

protein sequence of TCONS_00000346-protein

>TCONS_00000346-protein ID=TCONS_00000346-protein|Name=TCONS_00000346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
RNLPGYKEPIPGDNEEPASYSRNHEFIIQQSGPAVNIKIIEREPERYLLA
DLTYAVQCKEWPAISNWFIRCRKWPSCEDVTQIVKLGFHLVPKSNTNDKK
KLTWRFSFSIAEIELSKLLKPTARKCFIA
Run BLAST on NCBI

transcript from alignment at sc0000001:1573359..1573748

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000346 ID=TCONS_00000346|Name=TCONS_00000346|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0000001:1573359..1573748 (Clytia hemisphaerica)
ATAGCAATAAAACATTTTCGAGCGGTCGGTTTTAACAACTTTGAGAGCTC
AATTTCCGCAATAGAAAAGGAAAAACGCCATGttaatttctttttatcat
ttgtaTTGGATTTTGGCACGAGATGAAACCCTAATTTTACTATCTGCGTG
ACGTCTTCACAACTCGGCCATTTCCTGCACCGTATGAACCAGTTTGATAT
GGCTGGCCACTCTTTGCATTGAACCGCATAAGTCAAATCTGCTAATAGAT
ACCTTTCTGGTTCTCTCTCAATGATCTTAATATTCACAGCTGGGCCAGAT
TGTTGGATGATAAATTCGTGATTTCTGGAGTAACTAGCAGGTTCTTCGTT
GTCCCCAGGTATTGGTTCCTTATAACCAGGAAGATTACGA

Coding sequence (CDS) from alignment at sc0000001:1573359..1573748

>TCONS_00000346 ID=TCONS_00000346|Name=TCONS_00000346|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000001:1573359..1573748 (Clytia hemisphaerica)
AGCAATAAAACATTTTCGAGCGGTCGGTTTTAACAACTTTGAGAGCTCAA
TTTCCGCAATAGAAAAGGAAAAACGCCATGttaatttctttttatcattt
gtaTTGGATTTTGGCACGAGATGAAACCCTAATTTTACTATCTGCGTGAC
GTCTTCACAACTCGGCCATTTCCTGCACCGTATGAACCAGTTTGATATGG
CTGGCCACTCTTTGCATTGAACCGCATAAGTCAAATCTGCTAATAGATAC
CTTTCTGGTTCTCTCTCAATGATCTTAATATTCACAGCTGGGCCAGATTG
TTGGATGATAAATTCGTGATTTCTGGAGTAACTAGCAGGTTCTTCGTTGT
CCCCAGGTATTGGTTCCTTATAACCAGGAAGATTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000220XLOC_000220Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000346-proteinTCONS_00000346-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000346-exon-sc0000001-1491911889:1573359..1573748TCONS_00000346-exon-sc0000001-1491911889:1573359..1573748Clytia hemisphaericaexon
TCONS_00000346-exon-sc0000001-1510915933:1573359..1573748TCONS_00000346-exon-sc0000001-1510915933:1573359..1573748Clytia hemisphaericaexon
TCONS_00000346-exon-sc0000001-1575043694:1573359..1573748TCONS_00000346-exon-sc0000001-1575043694:1573359..1573748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1573359..1573748 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.484879	0	0.567812	0	0	0	0	0	0.204594	0	0	0	0	1.3424	0.415488	0.461608	0.346305	0.230584	0.252842	0	3.15074e-07	1.06773	0.936377	0	0	0.937152	2.55677	0.275605	0.726899
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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