TCONS_00000341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000341
Unique NameTCONS_00000341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000341 ID=TCONS_00000341|Name=TCONS_00000341|organism=Clytia hemisphaerica|type=transcript|length=489bp
CGATCATCCAATGGATCCCGGGCCACTCAGACGTCCCAGGAAACGAACTC
GCTGACCAAGCAGCCAAAGAAGCGACCAAATTAGAGGCAGACCCCAGACC
AATATCATACAGAAGTGCCTGCACAATGATAAGAAGCAGAATCAAACACC
CGACGAACCACCAACAATTAAAGAAGGTCTACAGTCATTTCTCTAAACAA
CGCGAACAAGAGGTTAAAACCAGAGCAGATCAAGTCCTACTGGCACAACT
GAGAAGCGGAAAACACAAGGTCTTCCGTAGCTACCAACATATGATAGATG
AGAGCATTGACCCTACATGCACCAAATGTGACAGCGGGGAAATACACAAC
CTCGAACACTGGTTCCTCCGCTGCCCAGATGCATCAGAAGCAAAGcatga
aatttttgatgaaaaagaactTGAGGTGGGCCTGGGACTTCTCACAAAGT
GCCCTGAGAAGTCGATTGCCCTGGCGAAGAGGACTCTCT
Run BLAST on NCBI

protein sequence of TCONS_00000341-protein

>TCONS_00000341-protein ID=TCONS_00000341-protein|Name=TCONS_00000341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
IIQWIPGHSDVPGNELADQAAKEATKLEADPRPISYRSACTMIRSRIKHP
TNHQQLKKVYSHFSKQREQEVKTRADQVLLAQLRSGKHKVFRSYQHMIDE
SIDPTCTKCDSGEIHNLEHWFLRCPDASEAKHEIFDEKELEVGLGLLTKC
PEKSIALAKRTL
Run BLAST on NCBI

transcript from alignment at sc0000001:1473736..1474224

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000341 ID=TCONS_00000341|Name=TCONS_00000341|organism=Clytia hemisphaerica|type=transcript|length=489bp|location=Sequence derived from alignment at sc0000001:1473736..1474224 (Clytia hemisphaerica)
AGAGAGTCCTCTTCGCCAGGGCAATCGACTTCTCAGGGCACTTTGTGAGA
AGTCCCAGGCCCACCTCAagttctttttcatcaaaaatttcatgCTTTGC
TTCTGATGCATCTGGGCAGCGGAGGAACCAGTGTTCGAGGTTGTGTATTT
CCCCGCTGTCACATTTGGTGCATGTAGGGTCAATGCTCTCATCTATCATA
TGTTGGTAGCTACGGAAGACCTTGTGTTTTCCGCTTCTCAGTTGTGCCAG
TAGGACTTGATCTGCTCTGGTTTTAACCTCTTGTTCGCGTTGTTTAGAGA
AATGACTGTAGACCTTCTTTAATTGTTGGTGGTTCGTCGGGTGTTTGATT
CTGCTTCTTATCATTGTGCAGGCACTTCTGTATGATATTGGTCTGGGGTC
TGCCTCTAATTTGGTCGCTTCTTTGGCTGCTTGGTCAGCGAGTTCGTTTC
CTGGGACGTCTGAGTGGCCCGGGATCCATTGGATGATCG

Coding sequence (CDS) from alignment at sc0000001:1473736..1474224

>TCONS_00000341 ID=TCONS_00000341|Name=TCONS_00000341|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000001:1473736..1474224 (Clytia hemisphaerica)
GAGAGTCCTCTTCGCCAGGGCAATCGACTTCTCAGGGCACTTTGTGAGAA
GTCCCAGGCCCACCTCAagttctttttcatcaaaaatttcatgCTTTGCT
TCTGATGCATCTGGGCAGCGGAGGAACCAGTGTTCGAGGTTGTGTATTTC
CCCGCTGTCACATTTGGTGCATGTAGGGTCAATGCTCTCATCTATCATAT
GTTGGTAGCTACGGAAGACCTTGTGTTTTCCGCTTCTCAGTTGTGCCAGT
AGGACTTGATCTGCTCTGGTTTTAACCTCTTGTTCGCGTTGTTTAGAGAA
ATGACTGTAGACCTTCTTTAATTGTTGGTGGTTCGTCGGGTGTTTGATTC
TGCTTCTTATCATTGTGCAGGCACTTCTGTATGATATTGGTCTGGGGTCT
GCCTCTAATTTGGTCGCTTCTTTGGCTGCTTGGTCAGCGAGTTCGTTTCC
TGGGACGTCTGAGTGGCCCGGGATCCATTGGATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000215XLOC_000215Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000341-proteinTCONS_00000341-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000341-exon-sc0000001-1491911889:1473736..1474224TCONS_00000341-exon-sc0000001-1491911889:1473736..1474224Clytia hemisphaericaexon
TCONS_00000341-exon-sc0000001-1510915933:1473736..1474224TCONS_00000341-exon-sc0000001-1510915933:1473736..1474224Clytia hemisphaericaexon
TCONS_00000341-exon-sc0000001-1575043694:1473736..1474224TCONS_00000341-exon-sc0000001-1575043694:1473736..1474224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1473736..1474224 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19652	0.168903	0.879425	0.140356	0	0.270041	1.47136	1.26739	1.29803	1.58906	1.12159	1.73375	0	0	0.324951	0.170995	0	0	0	0	0	0.363547	0	0	0	0	0	0	0.140634	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR002156RNaseH_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004523RNA-DNA hybrid ribonuclease activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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