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TCONS_00000340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000340
Unique NameTCONS_00000340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1033

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000340 ID=TCONS_00000340|Name=TCONS_00000340|organism=Clytia hemisphaerica|type=transcript|length=1033bp
ATTGGATCCAAAGAAGACTCAAAAGTAAAAGCCAGTCAGAACTACAGTCA
TAAAAATTAAACAGATATGTCATGTAAACATTCTTTCCTATCAATAATAA
AGCAACTAAAAGGGGTAAAGGAGCTGCTGTAAAAGAGAGGTGAAAAAACC
TAGAAACCTGATCAGTGGGATAAGGGATAAAGGGGATGAATAAAAAAAAG
GGTAGTGAAGAAAGGGATCAGCTTCTTTTCACCTCACATTGTAGTAGGTC
CTTAAAACCCTGTCtatattcaaaattttgccaatttgCCAAATACATCT
TACAGGTATCAATGTTCTGTTTATCTTCGTCCTTTACCAACCTTACATTT
TCCAAAAGGCATTTGCTCGCACCATTAATTACAATATCTATTGGTTCTAA
CCCAAAAGTATCACATgcatttatcaaatttccaagaACAAAATGACTCC
TTTCGCTACAAGTTAATAGATGCAGAAGATAAGGGGCAGTGATTCGATTT
TTAAAGAGTTGATCAAAAAGTTGTACCCTCCTTTGTAAGATGAGAGTTGA
TATCTCTGAGATGTGGAAAAGATCTAGCAAGTAGTTTTTACTGTACTTTG
ACAGGCCAAGCAAGGATTTAAGACTGGATCTCCCACACCTGTTGAGCTGC
AAGGTGGCAGTTTGGTTAATGTCAACGATTTCCAGGCCATAAAGGAGTTG
AGGTATTATCACTGTCTTGTAGATGGTCGCAATGCTGTAAGGGTGGAGTT
TCCTTAATGTTAATCGGCACCATCTCGCCAACTTTTCCTTGTTCTTATAC
GCAACTCCTATTTTAGTgtacgcccgccgcctttatgttccttCCCTCTG
TAATGattaatacaccgtttaggagtctcacTATCTCCACCgtaaaaacg
gtaggtaaaaatgtttactttagtactgtggacggttagaggaatgtaaa
cattgtcaattttttttctttcctttaacgAGAATGATATAAATATCTGA
ACATCAATCATAATTTCatggatctctcctgaa
Run BLAST on NCBI

transcript from alignment at sc0000001:1438304..1439336

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000340 ID=TCONS_00000340|Name=TCONS_00000340|organism=Clytia hemisphaerica|type=transcript|length=1033bp|location=Sequence derived from alignment at sc0000001:1438304..1439336 (Clytia hemisphaerica)
ttcaggagagatccatGAAATTATGATTGATGTTCAGATATTTATATCAT TCTcgttaaaggaaagaaaaaaaattgacaatgtttacattcctctaacc gtccacagtactaaagtaaacatttttacctaccgtttttacGGTGGAGA TAgtgagactcctaaacggtgtattaatCATTACAGAGGGaaggaacata aaggcggcgggcgtacACTAAAATAGGAGTTGCGTATAAGAACAAGGAAA AGTTGGCGAGATGGTGCCGATTAACATTAAGGAAACTCCACCCTTACAGC ATTGCGACCATCTACAAGACAGTGATAATACCTCAACTCCTTTATGGCCT GGAAATCGTTGACATTAACCAAACTGCCACCTTGCAGCTCAACAGGTGTG GGAGATCCAGTCTTAAATCCTTGCTTGGCCTGTCAAAGTACAGTAAAAAC TACTTGCTAGATCTTTTCCACATCTCAGAGATATCAACTCTCATCTTACA AAGGAGGGTACAACTTTTTGATCAACTCTTTAAAAATCGAATCACTGCCC CTTATCTTCTGCATCTATTAACTTGTAGCGAAAGGAGTCATTTTGTtctt ggaaatttgataaatgcATGTGATACTTTTGGGTTAGAACCAATAGATAT TGTAATTAATGGTGCGAGCAAATGCCTTTTGGAAAATGTAAGGTTGGTAA AGGACGAAGATAAACAGAACATTGATACCTGTAAGATGTATTTGGcaaat tggcaaaattttgaatataGACAGGGTTTTAAGGACCTACTACAATGTGA GGTGAAAAGAAGCTGATCCCTTTCTTCACTACCCTTTTTTTTATTCATCC CCTTTATCCCTTATCCCACTGATCAGGTTTCTAGGTTTTTTCACCTCTCT TTTACAGCAGCTCCTTTACCCCTTTTAGTTGCTTTATTATTGATAGGAAA GAATGTTTACATGACATATCTGTTTAATTTTTATGACTGTAGTTCTGACT GGCTTTTACTTTTGAGTCTTCTTTGGATCCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000214XLOC_000214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000340-exon-sc0000001-1491911889:1438304..1439336TCONS_00000340-exon-sc0000001-1491911889:1438304..1439336Clytia hemisphaericaexon
TCONS_00000340-exon-sc0000001-1510915933:1438304..1439336TCONS_00000340-exon-sc0000001-1510915933:1438304..1439336Clytia hemisphaericaexon
TCONS_00000340-exon-sc0000001-1575043694:1438304..1439336TCONS_00000340-exon-sc0000001-1575043694:1438304..1439336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1438304..1439336 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.464674 0.361255 0.620721 0.4862 1.37899 0.551739 1.65022 0.981192 0.26779 0.408837 0.235313 0.488523 2.61173 2.74604 0.38432 0.299034 0.864522 0.496929 0.320383 0.23947 0.443588 0.609148 0.493666 0.706455 1.12756 1.6884 0.236151 0.303881 0.477883 0.168671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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