TCONS_00000337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000337
Unique NameTCONS_00000337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000337 ID=TCONS_00000337|Name=TCONS_00000337|organism=Clytia hemisphaerica|type=transcript|length=1930bp
CTATGAAAAATACAGATGACTGTTGAAGACAGCACGAGAGATTCTAAATC
TATAGGAAATTGAATGATTGATAAAGAGTTGTGTTGTATCTGAGCTTATG
TTATGcagaattttttcgaaattaattTTTCTGAGGTTTTGTGAAGGGTT
TTACAAGACTGATGCTAGAGAATGAATTAGTTTGGTTGGATTGTGGTGaa
ctttgtttgttttgattgtgaATCAACCTAGGAAACGTACGAATATCCAA
AATGGCGGCTACCAAGAATTAtggttgtttttcatttgtttgtgATTATT
TCAAGAAATGTTTTCCATtcgtaaaaagtaaaaaatcatcTCCTACGCGA
ATACGATACGTCCCTCCGGCTCACCAACACGCGTCAAGGAAAACTAGTTC
TACCAGCGTCCAGCATCAAGAAAGAAGACGTCTATCAAGCAACGATTCAT
ACTCGGGACGAAAACATTCCAACAACGAATTACACCCAGGGCGGAAAATT
TCCAACAGTGAACTAAACGCAGGACGAAAACATTCAGGCAGCAAATCCCC
TAGTAGATCGCCGAATATATCACCGAATAGATCAAATAAATCTAGGAAAG
TATCCAGCGTCTCCAAAAAGCTTAGTGACGCTATTGATTTAGATGATACC
AGTCGTAAATCAAGATATGTAGCAAAAGTGTCAATTACAAATTCAGAAGT
CAATCCTGAACGATCACCAGTAAACaataaaatggcaaaaaatCACTGGA
AACGAGGTATGACTATCATTAAAGAACGCAAAGCGAATGttgaaaatgat
aaagaaaTGAAAGATATTGCATGAAAGGGTTTGGGAAGTTTGAACAGAAT
TTTAGCTAATTTATTGTTGGTTAGAATTTGATGAGTTTTATTGCCGACTT
GATCCGTCTTTCCGGTGAATTCACATGAAGTGAAcccgggggagggggca
ctcgatgtgaaaacgaccatacgttcggcccaaaatttggcttctaaaat
gggacccttacagtgcagtgaatttccatgaaaaatcatacccttacagt
gcacttttttaaaatttctcgCAATtgaattggccttttatcacaatttc
ctacccttacagggcagttcagtgcagttttgtaatttcctacccttaca
gtgcacaagccgaactatgaaaaacctatccttaagggccgaacgtctgg
taggtcatttaccttgagtgccccccccccccccggggaagtGAACCATA
AACACTTACATACCATTCAAAGGTGGAAcaaaaattagaataaaaaaatc
taaggggatcctgaaaaattaaaaacggtCAACATAGGtcgtaagttttt
tttcttctggaaTAGTCCATTACCAGACATCACTTCACCATCATCAAGAT
CAGACAATTGCATCTACCATTAACTAGAACTAATGATAAAACCTAGTTCa
ttatgatttataaattaTACGGATTccattggaactaattttcgcggtcg
agaaaaaagatcggaaaaattgtatttcgcgggttttaattttcgtggtt
ttgctttttttggtcaaatttctttttcattttcctagggattttgcGGG
TtaaaattttcgcagttttgCCAAAAAGCCGCGAAAAAAACGCTAAATTA
ATTcccacaaaaattagttccaataaagTAATGCTATACATTTGATTATT
TAAGTTTATGTATTAAAGGTTAAGCGATGATTTAAGAGGGCTCTACAAGG
TGAAGGTGatacaattttcagaaaaaaatatacacaatTTGCTTCACAGT
ACTTTCAGTTTCATGTTTAAAACAATGTGTTTGTGTTTATTTAAGTTtat
taatttacaatttttataaattagaaatattttaacgATTAATACAATTC
ATTGAAAACGTCAAATACTATCTATACAAC
Run BLAST on NCBI

protein sequence of TCONS_00000337-protein

>TCONS_00000337-protein ID=TCONS_00000337-protein|Name=TCONS_00000337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MAATKNYGCFSFVCDYFKKCFPFVKSKKSSPTRIRYVPPAHQHASRKTSS
TSVQHQERRRLSSNDSYSGRKHSNNELHPGRKISNSELNAGRKHSGSKSP
SRSPNISPNRSNKSRKVSSVSKKLSDAIDLDDTSRKSRYVAKVSITNSEV
NPERSPVNNKMAKNHWKRGMTIIKERKANVENDKEMKDIA
Run BLAST on NCBI

transcript from alignment at sc0000001:1414435..1416364

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000337 ID=TCONS_00000337|Name=TCONS_00000337|organism=Clytia hemisphaerica|type=transcript|length=1930bp|location=Sequence derived from alignment at sc0000001:1414435..1416364 (Clytia hemisphaerica)
GTTGTATAGATAGTATTTGACGTTTTCAATGAATTGTATTAATcgttaaa atatttctaatttataaaaattgtaaattaataAACTTAAATAAACACAA ACACATTGTTTTAAACATGAAACTGAAAGTACTGTGAAGCAAattgtgta tatttttttctgaaaattgtatCACCTTCACCTTGTAGAGCCCTCTTAAA TCATCGCTTAACCTTTAATACATAAACTTAAATAATCAAATGTATAGCAT TActttattggaactaatttttgtgggAATTAATTTAGCGTTTTTTTCGC GGCTTTTTGGcaaaactgcgaaaattttaACCCgcaaaatccctaggaaa atgaaaaagaaatttgaccaaaaaaagcaaaaccacgaaaattaaaaccc gcgaaatacaatttttccgatcttttttctcgaccgcgaaaattagttcc aatggAATCCGTAtaatttataaatcataatGAACTAGGTTTTATCATTA GTTCTAGTTAATGGTAGATGCAATTGTCTGATCTTGATGATGGTGAAGTG ATGTCTGGTAATGGACTAttccagaagaaaaaaaacttacgaCCTATGTT Gaccgtttttaatttttcaggatccccttagatttttttattctaatttt tgTTCCACCTTTGAATGGTATGTAAGTGTTTATGGTTCacttccccgggg ggggggggggcactcaaggtaaatgacctaccagacgttcggcccttaag gataggtttttcatagttcggcttgtgcactgtaagggtaggaaattaca aaactgcactgaactgccctgtaagggtaggaaattgtgataaaaggcca attcaATTGcgagaaattttaaaaaagtgcactgtaagggtatgattttt catggaaattcactgcactgtaagggtcccattttagaagccaaattttg ggccgaacgtatggtcgttttcacatcgagtgccccctcccccgggTTCA CTTCATGTGAATTCACCGGAAAGACGGATCAAGTCGGCAATAAAACTCAT CAAATTCTAACCAACAATAAATTAGCTAAAATTCTGTTCAAACTTCCCAA ACCCTTTCATGCAATATCTTTCAtttctttatcattttcaaCATTCGCTT TGCGTTCTTTAATGATAGTCATACCTCGTTTCCAGTGattttttgccatt ttattGTTTACTGGTGATCGTTCAGGATTGACTTCTGAATTTGTAATTGA CACTTTTGCTACATATCTTGATTTACGACTGGTATCATCTAAATCAATAG CGTCACTAAGCTTTTTGGAGACGCTGGATACTTTCCTAGATTTATTTGAT CTATTCGGTGATATATTCGGCGATCTACTAGGGGATTTGCTGCCTGAATG TTTTCGTCCTGCGTTTAGTTCACTGTTGGAAATTTTCCGCCCTGGGTGTA ATTCGTTGTTGGAATGTTTTCGTCCCGAGTATGAATCGTTGCTTGATAGA CGTCTTCTTTCTTGATGCTGGACGCTGGTAGAACTAGTTTTCCTTGACGC GTGTTGGTGAGCCGGAGGGACGTATCGTATTCGCGTAGGAgatgattttt tactttttacgaATGGAAAACATTTCTTGAAATAATcacaaacaaatgaa aaacaaccaTAATTCTTGGTAGCCGCCATTTTGGATATTCGTACGTTTCC TAGGTTGATtcacaatcaaaacaaacaaagttCACCACAATCCAACCAAA CTAATTCATTCTCTAGCATCAGTCTTGTAAAACCCTTCACAAAACCTCAG AAAaattaatttcgaaaaaattctgCATAACATAAGCTCAGATACAACAC AACTCTTTATCAATCATTCAATTTCCTATAGATTTAGAATCTCTCGTGCT GTCTTCAACAGTCATCTGTATTTTTCATAG

Coding sequence (CDS) from alignment at sc0000001:1414435..1416364

>TCONS_00000337 ID=TCONS_00000337|Name=TCONS_00000337|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000001:1414435..1416364 (Clytia hemisphaerica)
TCATGCAATATCTTTCAtttctttatcattttcaaCATTCGCTTTGCGTT
CTTTAATGATAGTCATACCTCGTTTCCAGTGattttttgccattttattG
TTTACTGGTGATCGTTCAGGATTGACTTCTGAATTTGTAATTGACACTTT
TGCTACATATCTTGATTTACGACTGGTATCATCTAAATCAATAGCGTCAC
TAAGCTTTTTGGAGACGCTGGATACTTTCCTAGATTTATTTGATCTATTC
GGTGATATATTCGGCGATCTACTAGGGGATTTGCTGCCTGAATGTTTTCG
TCCTGCGTTTAGTTCACTGTTGGAAATTTTCCGCCCTGGGTGTAATTCGT
TGTTGGAATGTTTTCGTCCCGAGTATGAATCGTTGCTTGATAGACGTCTT
CTTTCTTGATGCTGGACGCTGGTAGAACTAGTTTTCCTTGACGCGTGTTG
GTGAGCCGGAGGGACGTATCGTATTCGCGTAGGAgatgattttttacttt
ttacgaATGGAAAACATTTCTTGAAATAATcacaaacaaatgaaaaacaa
ccaTAATTCTTGGTAGCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000211XLOC_000211Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000337-proteinTCONS_00000337-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000337-exon-sc0000001-1491911889:1414435..1416364TCONS_00000337-exon-sc0000001-1491911889:1414435..1416364Clytia hemisphaericaexon
TCONS_00000337-exon-sc0000001-1510915933:1414435..1416364TCONS_00000337-exon-sc0000001-1510915933:1414435..1416364Clytia hemisphaericaexon
TCONS_00000337-exon-sc0000001-1575043694:1414435..1416364TCONS_00000337-exon-sc0000001-1575043694:1414435..1416364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1414435..1416364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.83518 4.01632 1.81932 1.32559 22.2048 15.603 9.94923 10.2975 7.07548 10.4809 5.69919 5.61171 5.92564 5.4411 1.56837 1.97564 0.921107 1.53314 8.10308 9.51203 0.632728 0.600003 4.16405 3.17277 0.310582 0.585575 0.797225 0.893579 2.21527 2.32357
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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