Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000335
Unique NameTCONS_00000335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000335 ID=TCONS_00000335|Name=TCONS_00000335|organism=Clytia hemisphaerica|type=transcript|length=952bp
GTTTTACATTGCGTTGGTTTTTTCTTCCATGTATTCGGATTATGGTTGCT
CTTAAGAATTCGTGAACGAAATTTATTCATGGAATCGCAACGCATATATC
TCATTTGTCTGAGTATTGGTGAAGGTATTTATTGTTTATTAATCACTTTG
TTTTACATTGGATTAATTAACGATGATATGAACGTGGTTAATTATTCTTT
CATCATTGGCAATGGATTCTACTTGTTTTACATCGTTATTATTCTCCTCT
TATCCATTGATCGCGTCTTAACCATACGTTATAATCTACGTTACCCACAA
ATCTGTTCGAAAGCGAAAACCAAGTTATTAATATTCATTTGCAGCATTGT
AATCACTTTCTTGACCATTACATTTCTGGTACTTTCACCAAGTTTCGATG
GAACATTTGCATTCTTATCTTTATACGCTTACCCGACGATAGGTGTAACT
TTCATGCTCTTCGTTATCCTGTGTTATGTCTCCATATGTTATTTCGCCTG
GATCAAACAAAGGGAAAATAAAATAACACCTGTTAAAACAGTTCACCATC
GACCTAGAGTGATCATTCAGGAGCAAGACCCTAATAACCAACAACCAGGT
CCTTTCAGCCAACCATCAACTCCGATATCAGGTGCCAGGGGCTACCACCG
ACACCGTACAACTCACACCGAACTTCACCAGAATCGACATAGAAGCCGAA
CTATTTTACACCGTATGAGAAAAGGAACATTAGTAACCTCTCTGCTTATC
TTGACcttcattattttcattttcattcctGATCAAATCCATTTTTATTG
TCATCTCACAAAGACAGTCATTCCAAGATCAATCTACATCATGTTTAGTA
TCTTTTATCCTCTCTCGTTGATCAGTGATGCAATCATTTATGTTTTCTTC
CAAAAGAAAATCAGACGTTATATAATGAACCGCTTTTGTTTTTCAAGATA
GA
Run BLAST on NCBI

protein sequence of TCONS_00000335-protein

>TCONS_00000335-protein ID=TCONS_00000335-protein|Name=TCONS_00000335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
VLHCVGFFFHVFGLWLLLRIRERNLFMESQRIYLICLSIGEGIYCLLITL
FYIGLINDDMNVVNYSFIIGNGFYLFYIVIILLLSIDRVLTIRYNLRYPQ
ICSKAKTKLLIFICSIVITFLTITFLVLSPSFDGTFAFLSLYAYPTIGVT
FMLFVILCYVSICYFAWIKQRENKITPVKTVHHRPRVIIQEQDPNNQQPG
PFSQPSTPISGARGYHRHRTTHTELHQNRHRSRTILHRMRKGTLVTSLLI
LTFIIFIFIPDQIHFYCHLTKTVIPRSIYIMFSIFYPLSLISDAIIYVFF
QKKIRRYIMNRFCFSR
Run BLAST on NCBI

transcript from alignment at sc0000001:1380394..1381345

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000335 ID=TCONS_00000335|Name=TCONS_00000335|organism=Clytia hemisphaerica|type=transcript|length=952bp|location=Sequence derived from alignment at sc0000001:1380394..1381345 (Clytia hemisphaerica)
TCTATCTTGAAAAACAAAAGCGGTTCATTATATAACGTCTGATTTTCTTT TGGAAGAAAACATAAATGATTGCATCACTGATCAACGAGAGAGGATAAAA GATACTAAACATGATGTAGATTGATCTTGGAATGACTGTCTTTGTGAGAT GACAATAAAAATGGATTTGATCaggaatgaaaatgaaaataatgaagGTC AAGATAAGCAGAGAGGTTACTAATGTTCCTTTTCTCATACGGTGTAAAAT AGTTCGGCTTCTATGTCGATTCTGGTGAAGTTCGGTGTGAGTTGTACGGT GTCGGTGGTAGCCCCTGGCACCTGATATCGGAGTTGATGGTTGGCTGAAA GGACCTGGTTGTTGGTTATTAGGGTCTTGCTCCTGAATGATCACTCTAGG TCGATGGTGAACTGTTTTAACAGGTGTTATTTTATTTTCCCTTTGTTTGA TCCAGGCGAAATAACATATGGAGACATAACACAGGATAACGAAGAGCATG AAAGTTACACCTATCGTCGGGTAAGCGTATAAAGATAAGAATGCAAATGT TCCATCGAAACTTGGTGAAAGTACCAGAAATGTAATGGTCAAGAAAGTGA TTACAATGCTGCAAATGAATATTAATAACTTGGTTTTCGCTTTCGAACAG ATTTGTGGGTAACGTAGATTATAACGTATGGTTAAGACGCGATCAATGGA TAAGAGGAGAATAATAACGATGTAAAACAAGTAGAATCCATTGCCAATGA TGAAAGAATAATTAACCACGTTCATATCATCGTTAATTAATCCAATGTAA AACAAAGTGATTAATAAACAATAAATACCTTCACCAATACTCAGACAAAT GAGATATATGCGTTGCGATTCCATGAATAAATTTCGTTCACGAATTCTTA AGAGCAACCATAATCCGAATACATGGAAGAAAAAACCAACGCAATGTAAA AC

Coding sequence (CDS) from alignment at sc0000001:1380394..1381345

>TCONS_00000335 ID=TCONS_00000335|Name=TCONS_00000335|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at sc0000001:1380394..1381345 (Clytia hemisphaerica)
CTATCTTGAAAAACAAAAGCGGTTCATTATATAACGTCTGATTTTCTTTT
GGAAGAAAACATAAATGATTGCATCACTGATCAACGAGAGAGGATAAAAG
ATACTAAACATGATGTAGATTGATCTTGGAATGACTGTCTTTGTGAGATG
ACAATAAAAATGGATTTGATCaggaatgaaaatgaaaataatgaagGTCA
AGATAAGCAGAGAGGTTACTAATGTTCCTTTTCTCATACGGTGTAAAATA
GTTCGGCTTCTATGTCGATTCTGGTGAAGTTCGGTGTGAGTTGTACGGTG
TCGGTGGTAGCCCCTGGCACCTGATATCGGAGTTGATGGTTGGCTGAAAG
GACCTGGTTGTTGGTTATTAGGGTCTTGCTCCTGAATGATCACTCTAGGT
CGATGGTGAACTGTTTTAACAGGTGTTATTTTATTTTCCCTTTGTTTGAT
CCAGGCGAAATAACATATGGAGACATAACACAGGATAACGAAGAGCATGA
AAGTTACACCTATCGTCGGGTAAGCGTATAAAGATAAGAATGCAAATGTT
CCATCGAAACTTGGTGAAAGTACCAGAAATGTAATGGTCAAGAAAGTGAT
TACAATGCTGCAAATGAATATTAATAACTTGGTTTTCGCTTTCGAACAGA
TTTGTGGGTAACGTAGATTATAACGTATGGTTAAGACGCGATCAATGGAT
AAGAGGAGAATAATAACGATGTAAAACAAGTAGAATCCATTGCCAATGAT
GAAAGAATAATTAACCACGTTCATATCATCGTTAATTAATCCAATGTAAA
ACAAAGTGATTAATAAACAATAAATACCTTCACCAATACTCAGACAAATG
AGATATATGCGTTGCGATTCCATGAATAAATTTCGTTCACGAATTCTTAA
GAGCAACCATAATCCGAATACATGGAAGAAAAAACCAACGCAATGTAAAA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000209XLOC_000209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000335-exon-sc0000001-1491911889:1380394..1381345TCONS_00000335-exon-sc0000001-1491911889:1380394..1381345Clytia hemisphaericaexon
TCONS_00000335-exon-sc0000001-1510915933:1380394..1381345TCONS_00000335-exon-sc0000001-1510915933:1380394..1381345Clytia hemisphaericaexon
TCONS_00000335-exon-sc0000001-1575043694:1380394..1381345TCONS_00000335-exon-sc0000001-1575043694:1380394..1381345Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000335-proteinTCONS_00000335-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1380394..1381345 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0477493 0 0 0 0.0643926 0.152652 0.184168 0.28736 0.281662 0 0.919153 0.254406 0.222296 0.230857 0 0.145485 0.250917 0.146961 0.253793 0.10623 0.1385 0.202667 0.328491 0.398194 0.97406 1.50988 0.0654738 0.0698754 0 0.107993
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top