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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000335 ID=TCONS_00000335|Name=TCONS_00000335|organism=Clytia hemisphaerica|type=transcript|length=952bp
GTTTTACATTGCGTTGGTTTTTTCTTCCATGTATTCGGATTATGGTTGCT
CTTAAGAATTCGTGAACGAAATTTATTCATGGAATCGCAACGCATATATC
TCATTTGTCTGAGTATTGGTGAAGGTATTTATTGTTTATTAATCACTTTG
TTTTACATTGGATTAATTAACGATGATATGAACGTGGTTAATTATTCTTT
CATCATTGGCAATGGATTCTACTTGTTTTACATCGTTATTATTCTCCTCT
TATCCATTGATCGCGTCTTAACCATACGTTATAATCTACGTTACCCACAA
ATCTGTTCGAAAGCGAAAACCAAGTTATTAATATTCATTTGCAGCATTGT
AATCACTTTCTTGACCATTACATTTCTGGTACTTTCACCAAGTTTCGATG
GAACATTTGCATTCTTATCTTTATACGCTTACCCGACGATAGGTGTAACT
TTCATGCTCTTCGTTATCCTGTGTTATGTCTCCATATGTTATTTCGCCTG
GATCAAACAAAGGGAAAATAAAATAACACCTGTTAAAACAGTTCACCATC
GACCTAGAGTGATCATTCAGGAGCAAGACCCTAATAACCAACAACCAGGT
CCTTTCAGCCAACCATCAACTCCGATATCAGGTGCCAGGGGCTACCACCG
ACACCGTACAACTCACACCGAACTTCACCAGAATCGACATAGAAGCCGAA
CTATTTTACACCGTATGAGAAAAGGAACATTAGTAACCTCTCTGCTTATC
TTGACcttcattattttcattttcattcctGATCAAATCCATTTTTATTG
TCATCTCACAAAGACAGTCATTCCAAGATCAATCTACATCATGTTTAGTA
TCTTTTATCCTCTCTCGTTGATCAGTGATGCAATCATTTATGTTTTCTTC
CAAAAGAAAATCAGACGTTATATAATGAACCGCTTTTGTTTTTCAAGATA
GA Run BLAST on NCBI protein sequence of TCONS_00000335-protein >TCONS_00000335-protein ID=TCONS_00000335-protein|Name=TCONS_00000335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
VLHCVGFFFHVFGLWLLLRIRERNLFMESQRIYLICLSIGEGIYCLLITL
FYIGLINDDMNVVNYSFIIGNGFYLFYIVIILLLSIDRVLTIRYNLRYPQ
ICSKAKTKLLIFICSIVITFLTITFLVLSPSFDGTFAFLSLYAYPTIGVT
FMLFVILCYVSICYFAWIKQRENKITPVKTVHHRPRVIIQEQDPNNQQPG
PFSQPSTPISGARGYHRHRTTHTELHQNRHRSRTILHRMRKGTLVTSLLI
LTFIIFIFIPDQIHFYCHLTKTVIPRSIYIMFSIFYPLSLISDAIIYVFF
QKKIRRYIMNRFCFSR Run BLAST on NCBI transcript from alignment at sc0000001:1380394..1381345 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000335 ID=TCONS_00000335|Name=TCONS_00000335|organism=Clytia hemisphaerica|type=transcript|length=952bp|location=Sequence derived from alignment at sc0000001:1380394..1381345 (Clytia hemisphaerica)
TCTATCTTGAAAAACAAAAGCGGTTCATTATATAACGTCTGATTTTCTTT
TGGAAGAAAACATAAATGATTGCATCACTGATCAACGAGAGAGGATAAAA
GATACTAAACATGATGTAGATTGATCTTGGAATGACTGTCTTTGTGAGAT
GACAATAAAAATGGATTTGATCaggaatgaaaatgaaaataatgaagGTC
AAGATAAGCAGAGAGGTTACTAATGTTCCTTTTCTCATACGGTGTAAAAT
AGTTCGGCTTCTATGTCGATTCTGGTGAAGTTCGGTGTGAGTTGTACGGT
GTCGGTGGTAGCCCCTGGCACCTGATATCGGAGTTGATGGTTGGCTGAAA
GGACCTGGTTGTTGGTTATTAGGGTCTTGCTCCTGAATGATCACTCTAGG
TCGATGGTGAACTGTTTTAACAGGTGTTATTTTATTTTCCCTTTGTTTGA
TCCAGGCGAAATAACATATGGAGACATAACACAGGATAACGAAGAGCATG
AAAGTTACACCTATCGTCGGGTAAGCGTATAAAGATAAGAATGCAAATGT
TCCATCGAAACTTGGTGAAAGTACCAGAAATGTAATGGTCAAGAAAGTGA
TTACAATGCTGCAAATGAATATTAATAACTTGGTTTTCGCTTTCGAACAG
ATTTGTGGGTAACGTAGATTATAACGTATGGTTAAGACGCGATCAATGGA
TAAGAGGAGAATAATAACGATGTAAAACAAGTAGAATCCATTGCCAATGA
TGAAAGAATAATTAACCACGTTCATATCATCGTTAATTAATCCAATGTAA
AACAAAGTGATTAATAAACAATAAATACCTTCACCAATACTCAGACAAAT
GAGATATATGCGTTGCGATTCCATGAATAAATTTCGTTCACGAATTCTTA
AGAGCAACCATAATCCGAATACATGGAAGAAAAAACCAACGCAATGTAAA
AC Coding sequence (CDS) from alignment at sc0000001:1380394..1381345 >TCONS_00000335 ID=TCONS_00000335|Name=TCONS_00000335|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at sc0000001:1380394..1381345 (Clytia hemisphaerica)
CTATCTTGAAAAACAAAAGCGGTTCATTATATAACGTCTGATTTTCTTTT
GGAAGAAAACATAAATGATTGCATCACTGATCAACGAGAGAGGATAAAAG
ATACTAAACATGATGTAGATTGATCTTGGAATGACTGTCTTTGTGAGATG
ACAATAAAAATGGATTTGATCaggaatgaaaatgaaaataatgaagGTCA
AGATAAGCAGAGAGGTTACTAATGTTCCTTTTCTCATACGGTGTAAAATA
GTTCGGCTTCTATGTCGATTCTGGTGAAGTTCGGTGTGAGTTGTACGGTG
TCGGTGGTAGCCCCTGGCACCTGATATCGGAGTTGATGGTTGGCTGAAAG
GACCTGGTTGTTGGTTATTAGGGTCTTGCTCCTGAATGATCACTCTAGGT
CGATGGTGAACTGTTTTAACAGGTGTTATTTTATTTTCCCTTTGTTTGAT
CCAGGCGAAATAACATATGGAGACATAACACAGGATAACGAAGAGCATGA
AAGTTACACCTATCGTCGGGTAAGCGTATAAAGATAAGAATGCAAATGTT
CCATCGAAACTTGGTGAAAGTACCAGAAATGTAATGGTCAAGAAAGTGAT
TACAATGCTGCAAATGAATATTAATAACTTGGTTTTCGCTTTCGAACAGA
TTTGTGGGTAACGTAGATTATAACGTATGGTTAAGACGCGATCAATGGAT
AAGAGGAGAATAATAACGATGTAAAACAAGTAGAATCCATTGCCAATGAT
GAAAGAATAATTAACCACGTTCATATCATCGTTAATTAATCCAATGTAAA
ACAAAGTGATTAATAAACAATAAATACCTTCACCAATACTCAGACAAATG
AGATATATGCGTTGCGATTCCATGAATAAATTTCGTTCACGAATTCTTAA
GAGCAACCATAATCCGAATACATGGAAGAAAAAACCAACGCAATGTAAAA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000335-exon-sc0000001-1491911889:1380394..1381345 | TCONS_00000335-exon-sc0000001-1491911889:1380394..1381345 | Clytia hemisphaerica | exon |
| TCONS_00000335-exon-sc0000001-1510915933:1380394..1381345 | TCONS_00000335-exon-sc0000001-1510915933:1380394..1381345 | Clytia hemisphaerica | exon |
| TCONS_00000335-exon-sc0000001-1575043694:1380394..1381345 | TCONS_00000335-exon-sc0000001-1575043694:1380394..1381345 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1380394..1381345 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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