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TCONS_00000333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000333
Unique NameTCONS_00000333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000333 ID=TCONS_00000333|Name=TCONS_00000333|organism=Clytia hemisphaerica|type=transcript|length=445bp
NTCACCAGCAAAACCAATGAAAACGACAAAAACAGTACAGACAACGATGA
ATCcaacaacaaagaaaaaggTGACAGTGAAAGGTATGTAGATGGTCCCC
CATTGCTTTACAAACCAGCGGAAAAATCTTATGAATTCGAAGAAAAGGCT
CTGAGAAAAATCCGTATTAATAACGTCGCAAACGTCATCATAGGACATCT
TAATATCAACTCGATAAGATACAAATTTGAAGGTCTCAAATTAGTTATCA
AAGATAACGTAGACGTTTTTTTGGTATCTGAAACTAAGATTGACGAATCA
TTCCCTGAAAATCATttcattattaaaaaaatatcgCTTGGACAGGGACA
GGGACAAACAGGGAGGAGGTCTTCTACTCTACGTACGTCAGGGCATTCCT
TCTAAACTCGTATTAAAAGACAAGAATTATGAAGCTATATTCATC
Run BLAST on NCBI

protein sequence of TCONS_00000333-protein

>TCONS_00000333-protein ID=TCONS_00000333-protein|Name=TCONS_00000333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
XTSKTNENDKNSTDNDESNNKEKGDSERYVDGPPLLYKPAEKSYEFEEKA
LRKIRINNVANVIIGHLNINSIRYKFEGLKLVIKDNVDVFLVSETKIDES
FPENHFIIKKISLGQGQGQTGRRSSTLRTSGHSF
Run BLAST on NCBI

transcript from alignment at sc0000001:1369260..1369704

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000333 ID=TCONS_00000333|Name=TCONS_00000333|organism=Clytia hemisphaerica|type=transcript|length=445bp|location=Sequence derived from alignment at sc0000001:1369260..1369704 (Clytia hemisphaerica)
GATGAATATAGCTTCATAATTCTTGTCTTTTAATACGAGTTTAGAAGGAA TGCCCTGACGTACGTAGAGTAGAAGACCTCCTCCCTGTTTGTCCCTGTCC CTGTCCAAGcgatatttttttaataatgaaATGATTTTCAGGGAATGATT CGTCAATCTTAGTTTCAGATACCAAAAAAACGTCTACGTTATCTTTGATA ACTAATTTGAGACCTTCAAATTTGTATCTTATCGAGTTGATATTAAGATG TCCTATGATGACGTTTGCGACGTTATTAATACGGATTTTTCTCAGAGCCT TTTCTTCGAATTCATAAGATTTTTCCGCTGGTTTGTAAAGCAATGGGGGA CCATCTACATACCTTTCACTGTCAcctttttctttgttgttgGATTCATC GTTGTCTGTACTGTTTTTGTCGTTTTCATTGGTTTTGCTGGTGAN

Coding sequence (CDS) from alignment at sc0000001:1369260..1369704

>TCONS_00000333 ID=TCONS_00000333|Name=TCONS_00000333|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0000001:1369260..1369704 (Clytia hemisphaerica)
TTAGAAGGAATGCCCTGACGTACGTAGAGTAGAAGACCTCCTCCCTGTTT
GTCCCTGTCCCTGTCCAAGcgatatttttttaataatgaaATGATTTTCA
GGGAATGATTCGTCAATCTTAGTTTCAGATACCAAAAAAACGTCTACGTT
ATCTTTGATAACTAATTTGAGACCTTCAAATTTGTATCTTATCGAGTTGA
TATTAAGATGTCCTATGATGACGTTTGCGACGTTATTAATACGGATTTTT
CTCAGAGCCTTTTCTTCGAATTCATAAGATTTTTCCGCTGGTTTGTAAAG
CAATGGGGGACCATCTACATACCTTTCACTGTCAcctttttctttgttgt
tgGATTCATCGTTGTCTGTACTGTTTTTGTCGTTTTCATTGGTTTTGCTG
GTGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000207XLOC_000207Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000333-exon-sc0000001-1491911889:1369260..1369704TCONS_00000333-exon-sc0000001-1491911889:1369260..1369704Clytia hemisphaericaexon
TCONS_00000333-exon-sc0000001-1510915933:1369260..1369704TCONS_00000333-exon-sc0000001-1510915933:1369260..1369704Clytia hemisphaericaexon
TCONS_00000333-exon-sc0000001-1575043694:1369260..1369704TCONS_00000333-exon-sc0000001-1575043694:1369260..1369704Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000333-proteinTCONS_00000333-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1369260..1369704 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1817 0.29319 0.989489 1.68398 2.02728 1.64451 0.193272 1.29206 0.380039 0.732979 0.665845 1.15538 0.696452 0.193677 0.304133 0.458033 0 0.277257 1.37107 0.668891 0.20988 1.06343 0.802077 0 0.902381 1.30665 0.824526 0.396878 0.500562 0.422435
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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