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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000331 ID=TCONS_00000331|Name=TCONS_00000331|organism=Clytia hemisphaerica|type=transcript|length=1518bp
GGGAGGTTGAATGTTTTAGAAGATTATGAGATGATTTTGAGCACAAGTTT
TATTCTTATTTATAGTGAACTGCACAGTCCACATGCAAACACCTGACGAC
TTAGAGGTAGCCCAGTCAGACGCCCTGGATGTAATCCAAGCCCATTTAGA
TAGTACAGAGCAAAACCCTACAAGCGACTCAAAAATTTTCCCAGAGAATT
ANACTGCGCAGTCCACATGCAAACACCTGACGACTTAGAGGTAGCCCAGT
CAGACGCCCTGGATGTAATCCAAGCCCATTTAGATAGTACAGAGCAAAAC
CCTACAAGCGACTCAAACATTTTCCCAGAGAATTCCCCTTCCCTGAAAAA
GACAGATAATCGCTTTGTCGCCCCGACGGAGCAGAGTTTTTCCCCTTCTG
TCTGTGATTTTTCCCCATCCGAGGTCTACCAGCAGCTGACAAAGTTAAAA
AGGCGAGTTTCAAATTTTGTCACAGAGCAAAAAGAATATACAGAAACTTT
AAAGACTGTAAAAAGTTCCTTGGAGGAGATTGTCACCAATAAGAATTTGG
AAGTAGATTTCGATCTAGTAAGTTCGAAATTAGACGTTATAGAAGCCCTT
GAAGCTGCTGAATTTGAACAGGCCCGTGAGATTTTTATCGAAGCCGAGCT
GATTAACAAGCAAATAAGACGTCAGTTTACCGTTTTTGACGAGTTAGATT
CTTCCCCGGATTATCAAGATTATTTAGACCTGAAAAAGGATTTGCGTAAT
TGGCCGAGTCTTTCCACGACGCTAATAGGGTTTTTGATACCTTTGTGGGG
CACACAAAACTTGCAAACGCGAACCTTAAAACAGAAATTGAGAAGAACCA
GGAAAAGTTTGGTTCACGTACCCCTGAGCCTGTAGATATTTCCACACCCA
TCCTTCCTATCCTCAGAAAGTCTTATCACCACGAGTCCCCACCAGAGACA
ATGGTGGAGAGCACCATGGATCAGATACCAGTTGCCGCTCTCCTTGCGAG
CAATGTCAACATCCCTGCCTTGCCTGAGTTTGGCTTAAGTGCTAATGATg
atattgttgatttttttacGAAGTTGGAACTTTCGTTAGCGTTTTATCAA
CTGAACAACGAACAGAAAGCAAGAATTGTTCCCTTGAGACTCAAAGAAAG
AGCCTATACCTTTTACCTCACCCTTAGCCAGATCATCAAAGATGACTACA
ACCTGTTGGTTGGTGCCCTGAAGAAAGAATTTGATGCCACAGAGTTGAAA
TACCGAAGACGTCAGGAGTTGCATGGTATTCAACAAAATGATGAATCCAT
TGCAAAGTATTTGTCCAGAGTTGAGAAGCTGTCTCAGAACTTAGAGGTTG
CTGATCAGACAAAGTTGGATCTGATGATCGCTGGGCTTGATCGACCATAC
AGGCAGTTCATTTAAATGAAACAGCCAAAATCCTATAGCGAAGCGACCCA
TAAGCTGCTATTAAAGGAATCTGTCAGCCCGCCTCAGGACAATGCTGCAA
ACATGAACAGCATCTTGT Run BLAST on NCBI protein sequence of TCONS_00000331-protein >TCONS_00000331-protein ID=TCONS_00000331-protein|Name=TCONS_00000331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MQTPDDLEVAQSDALDVIQAHLDSTEQNPTSDSNIFPENSPSLKKTDNRF
VAPTEQSFSPSVCDFSPSEVYQQLTKLKRRVSNFVTEQKEYTETLKTVKS
SLEEIVTNKNLEVDFDLVSSKLDVIEALEAAEFEQAREIFIEAELINKQI
RRQFTVFDELDSSPDYQDYLDLKKDLRNWPSLSTTLIGFLIPLWGTQNLQ
TRTLKQKLRRTRKSLVHVPLSL Run BLAST on NCBI transcript from alignment at sc0000001:1360328..1361845 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000331 ID=TCONS_00000331|Name=TCONS_00000331|organism=Clytia hemisphaerica|type=transcript|length=1518bp|location=Sequence derived from alignment at sc0000001:1360328..1361845 (Clytia hemisphaerica)
ACAAGATGCTGTTCATGTTTGCAGCATTGTCCTGAGGCGGGCTGACAGAT
TCCTTTAATAGCAGCTTATGGGTCGCTTCGCTATAGGATTTTGGCTGTTT
CATTTAAATGAACTGCCTGTATGGTCGATCAAGCCCAGCGATCATCAGAT
CCAACTTTGTCTGATCAGCAACCTCTAAGTTCTGAGACAGCTTCTCAACT
CTGGACAAATACTTTGCAATGGATTCATCATTTTGTTGAATACCATGCAA
CTCCTGACGTCTTCGGTATTTCAACTCTGTGGCATCAAATTCTTTCTTCA
GGGCACCAACCAACAGGTTGTAGTCATCTTTGATGATCTGGCTAAGGGTG
AGGTAAAAGGTATAGGCTCTTTCTTTGAGTCTCAAGGGAACAATTCTTGC
TTTCTGTTCGTTGTTCAGTTGATAAAACGCTAACGAAAGTTCCAACTTCg
taaaaaaatcaacaatatcATCATTAGCACTTAAGCCAAACTCAGGCAAG
GCAGGGATGTTGACATTGCTCGCAAGGAGAGCGGCAACTGGTATCTGATC
CATGGTGCTCTCCACCATTGTCTCTGGTGGGGACTCGTGGTGATAAGACT
TTCTGAGGATAGGAAGGATGGGTGTGGAAATATCTACAGGCTCAGGGGTA
CGTGAACCAAACTTTTCCTGGTTCTTCTCAATTTCTGTTTTAAGGTTCGC
GTTTGCAAGTTTTGTGTGCCCCACAAAGGTATCAAAAACCCTATTAGCGT
CGTGGAAAGACTCGGCCAATTACGCAAATCCTTTTTCAGGTCTAAATAAT
CTTGATAATCCGGGGAAGAATCTAACTCGTCAAAAACGGTAAACTGACGT
CTTATTTGCTTGTTAATCAGCTCGGCTTCGATAAAAATCTCACGGGCCTG
TTCAAATTCAGCAGCTTCAAGGGCTTCTATAACGTCTAATTTCGAACTTA
CTAGATCGAAATCTACTTCCAAATTCTTATTGGTGACAATCTCCTCCAAG
GAACTTTTTACAGTCTTTAAAGTTTCTGTATATTCTTTTTGCTCTGTGAC
AAAATTTGAAACTCGCCTTTTTAACTTTGTCAGCTGCTGGTAGACCTCGG
ATGGGGAAAAATCACAGACAGAAGGGGAAAAACTCTGCTCCGTCGGGGCG
ACAAAGCGATTATCTGTCTTTTTCAGGGAAGGGGAATTCTCTGGGAAAAT
GTTTGAGTCGCTTGTAGGGTTTTGCTCTGTACTATCTAAATGGGCTTGGA
TTACATCCAGGGCGTCTGACTGGGCTACCTCTAAGTCGTCAGGTGTTTGC
ATGTGGACTGCGCAGTNTAATTCTCTGGGAAAATTTTTGAGTCGCTTGTA
GGGTTTTGCTCTGTACTATCTAAATGGGCTTGGATTACATCCAGGGCGTC
TGACTGGGCTACCTCTAAGTCGTCAGGTGTTTGCATGTGGACTGTGCAGT
TCACTATAAATAAGAATAAAACTTGTGCTCAAAATCATCTCATAATCTTC
TAAAACATTCAACCTCCC Coding sequence (CDS) from alignment at sc0000001:1360328..1361845 >TCONS_00000331 ID=TCONS_00000331|Name=TCONS_00000331|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0000001:1360328..1361845 (Clytia hemisphaerica)
CTACAGGCTCAGGGGTACGTGAACCAAACTTTTCCTGGTTCTTCTCAATT
TCTGTTTTAAGGTTCGCGTTTGCAAGTTTTGTGTGCCCCACAAAGGTATC
AAAAACCCTATTAGCGTCGTGGAAAGACTCGGCCAATTACGCAAATCCTT
TTTCAGGTCTAAATAATCTTGATAATCCGGGGAAGAATCTAACTCGTCAA
AAACGGTAAACTGACGTCTTATTTGCTTGTTAATCAGCTCGGCTTCGATA
AAAATCTCACGGGCCTGTTCAAATTCAGCAGCTTCAAGGGCTTCTATAAC
GTCTAATTTCGAACTTACTAGATCGAAATCTACTTCCAAATTCTTATTGG
TGACAATCTCCTCCAAGGAACTTTTTACAGTCTTTAAAGTTTCTGTATAT
TCTTTTTGCTCTGTGACAAAATTTGAAACTCGCCTTTTTAACTTTGTCAG
CTGCTGGTAGACCTCGGATGGGGAAAAATCACAGACAGAAGGGGAAAAAC
TCTGCTCCGTCGGGGCGACAAAGCGATTATCTGTCTTTTTCAGGGAAGGG
GAATTCTCTGGGAAAATGTTTGAGTCGCTTGTAGGGTTTTGCTCTGTACT
ATCTAAATGGGCTTGGATTACATCCAGGGCGTCTGACTGGGCTACCTCTA
AGTCGTCAGGTGTTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000331-exon-sc0000001-1491911889:1360328..1361845 | TCONS_00000331-exon-sc0000001-1491911889:1360328..1361845 | Clytia hemisphaerica | exon |
| TCONS_00000331-exon-sc0000001-1510915933:1360328..1361845 | TCONS_00000331-exon-sc0000001-1510915933:1360328..1361845 | Clytia hemisphaerica | exon |
| TCONS_00000331-exon-sc0000001-1575043694:1360328..1361845 | TCONS_00000331-exon-sc0000001-1575043694:1360328..1361845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1360328..1361845 . |
Blast
The following BLAST results are available for this feature:
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