TCONS_00000330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000330
Unique NameTCONS_00000330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000330 ID=TCONS_00000330|Name=TCONS_00000330|organism=Clytia hemisphaerica|type=transcript|length=868bp
GTGGCTGAGTTGGTTTTTGGAAGAACAGATATTGTCGCACACCCTGCCGG
AGATGCATTTGAGATTAGCGAGTGTCGCCATGTCCACTACCAGTGCTTAG
TCCTTGACCGCAGAGCCAATGATCCCTTTGTTAATGGTACTTGTTATCAG
TACTTTCCCCTTGAGTCTCCAAAGTCCGTGCCTGTGCAGTTTGTTCATTT
GCCCTCCCGGCGGGCTTACTTTCATTCTTCCAGAATTGGTTGTCAAAAAC
TCCCCCAGCAAGTGGTTATCAACTCGGACCAGGGTCCCATCGCAGTAAGC
CCGGAAGGAAATTTTGAGCATATAAATCTAACAAAAGTCAATTACTCTCC
TAAATTGTGGATGACCCCGTACTTACGGTTTTTTGTCGAAACTCTTTGTG
AAGCTTCCAAAACCCAGTGAGCCTTATCCGTTGTTAGGAATGATGGCTGA
GGTCCATGAAAGTATGAGGCAGCTGCAAGAGCAAGTTGACCAGCTTTCTT
CGGGATCACCCACGAACGTATTTGCAGCTGTGGCAGCCGGTCTGGGTAAT
GTTTTGGAAAGGGTGGGAGAGGGTACCAGTGAGGTCATCAGCAGCCTGGG
GACAAGCATCAAATCGGCCGCCGAGGGTGTTGGCTCCCTTGGTAAAGACG
TTATCTCTAGCTCGGGAGATGCCTTGGCATCTACGATTAAAGAAAGTGGA
GGAGCTATTAAAAGTGTCACGGAAGGGGGGGGGCGAGCCTATTCAAAGGC
ATTCTCGGTGGTATCCCCGCGATACTTGGTATGGTGGCCCTGTTGATGAT
AGTCTCCCTTATAATCTACCTGATGAAAAGGATGCAAAGCCGGGAGAGTC
TGACCGATCCCACAGAGG
Run BLAST on NCBI

protein sequence of TCONS_00000330-protein

>TCONS_00000330-protein ID=TCONS_00000330-protein|Name=TCONS_00000330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MMAEVHESMRQLQEQVDQLSSGSPTNVFAAVAAGLGNVLERVGEGTSEVI
SSLGTSIKSAAEGVGSLGKDVISSSGDALASTIKESGGAIKSVTEGGGRA
YSKAFSVVSPRYLVWWPC
Run BLAST on NCBI

transcript from alignment at sc0000001:1354591..1355458

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000330 ID=TCONS_00000330|Name=TCONS_00000330|organism=Clytia hemisphaerica|type=transcript|length=868bp|location=Sequence derived from alignment at sc0000001:1354591..1355458 (Clytia hemisphaerica)
CCTCTGTGGGATCGGTCAGACTCTCCCGGCTTTGCATCCTTTTCATCAGG
TAGATTATAAGGGAGACTATCATCAACAGGGCCACCATACCAAGTATCGC
GGGGATACCACCGAGAATGCCTTTGAATAGGCTCGCCCCCCCCCTTCCGT
GACACTTTTAATAGCTCCTCCACTTTCTTTAATCGTAGATGCCAAGGCAT
CTCCCGAGCTAGAGATAACGTCTTTACCAAGGGAGCCAACACCCTCGGCG
GCCGATTTGATGCTTGTCCCCAGGCTGCTGATGACCTCACTGGTACCCTC
TCCCACCCTTTCCAAAACATTACCCAGACCGGCTGCCACAGCTGCAAATA
CGTTCGTGGGTGATCCCGAAGAAAGCTGGTCAACTTGCTCTTGCAGCTGC
CTCATACTTTCATGGACCTCAGCCATCATTCCTAACAACGGATAAGGCTC
ACTGGGTTTTGGAAGCTTCACAAAGAGTTTCGACAAAAAACCGTAAGTAC
GGGGTCATCCACAATTTAGGAGAGTAATTGACTTTTGTTAGATTTATATG
CTCAAAATTTCCTTCCGGGCTTACTGCGATGGGACCCTGGTCCGAGTTGA
TAACCACTTGCTGGGGGAGTTTTTGACAACCAATTCTGGAAGAATGAAAG
TAAGCCCGCCGGGAGGGCAAATGAACAAACTGCACAGGCACGGACTTTGG
AGACTCAAGGGGAAAGTACTGATAACAAGTACCATTAACAAAGGGATCAT
TGGCTCTGCGGTCAAGGACTAAGCACTGGTAGTGGACATGGCGACACTCG
CTAATCTCAAATGCATCTCCGGCAGGGTGTGCGACAATATCTGTTCTTCC
AAAAACCAACTCAGCCAC

Coding sequence (CDS) from alignment at sc0000001:1354591..1355458

>TCONS_00000330 ID=TCONS_00000330|Name=TCONS_00000330|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000001:1354591..1355458 (Clytia hemisphaerica)
TCAACAGGGCCACCATACCAAGTATCGCGGGGATACCACCGAGAATGCCT
TTGAATAGGCTCGCCCCCCCCCTTCCGTGACACTTTTAATAGCTCCTCCA
CTTTCTTTAATCGTAGATGCCAAGGCATCTCCCGAGCTAGAGATAACGTC
TTTACCAAGGGAGCCAACACCCTCGGCGGCCGATTTGATGCTTGTCCCCA
GGCTGCTGATGACCTCACTGGTACCCTCTCCCACCCTTTCCAAAACATTA
CCCAGACCGGCTGCCACAGCTGCAAATACGTTCGTGGGTGATCCCGAAGA
AAGCTGGTCAACTTGCTCTTGCAGCTGCCTCATACTTTCATGGACCTCAG
CCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000204XLOC_000204Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000330-proteinTCONS_00000330-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000330-exon-sc0000001-1491911889:1354591..1355458TCONS_00000330-exon-sc0000001-1491911889:1354591..1355458Clytia hemisphaericaexon
TCONS_00000330-exon-sc0000001-1510915933:1354591..1355458TCONS_00000330-exon-sc0000001-1510915933:1354591..1355458Clytia hemisphaericaexon
TCONS_00000330-exon-sc0000001-1575043694:1354591..1355458TCONS_00000330-exon-sc0000001-1575043694:1354591..1355458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1354591..1355458 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.175752	0.0609556	0.0596355	11.8332	13.5932	13.0055	17.5505	7.23056	5.76016	6.46176	4.90751	6.03512	7.05889	0	0	0	0.12427	0	0	0	0	0	0	3.70081	7.60399	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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