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TCONS_00000328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000328
Unique NameTCONS_00000328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000328 ID=TCONS_00000328|Name=TCONS_00000328|organism=Clytia hemisphaerica|type=transcript|length=571bp
NTTTTGTCtttgattttatgtttgatGAACAATATTGATAACTTTTCACT
GTCACCTTGAAATTGTGGTGTAGTGTTCTTGAGACGTTTTATACACAGCA
TTCATGCAGTCGCACGCTGGTAAGATAACATTTCATTTTATTAAGTTTGA
TATTTTTGCCCTATTTTCTAGACTTAGAATATTTGGCTTGTCAaacaata
ttttctattttcactgagatttgtgAATATTCATTTTATCAGATTGAGga
caatttgatttgattttgtacaaattttgatAAGATTTGTGaccaaagaa
ttttcttttgttcttagtTTGAACGCACTGTTACAAACACGTCACGTACT
GACTCGTCTCAATTCGCTGTTCCCACAACAGACCACAGTTGAGGGCGAAC
CACGCATGAGAACGAGGCGGGGCAGAAGTGGCGTTTTGCAACGGGAGAAT
CAACAACGAAATGATGGATTGTATACAATTTGGTGTGTATACCGATAAAA
CGATACGACGCTGGGTGCGGTATCTGAACGAAATGGAGTATCTGTGACGA
TACGGTAGGAGAGAATTCCGG
Run BLAST on NCBI

transcript from alignment at sc0000001:1318969..1319539

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000328 ID=TCONS_00000328|Name=TCONS_00000328|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0000001:1318969..1319539 (Clytia hemisphaerica)
CCGGAATTCTCTCCTACCGTATCGTCACAGATACTCCATTTCGTTCAGAT ACCGCACCCAGCGTCGTATCGTTTTATCGGTATACACACCAAATTGTATA CAATCCATCATTTCGTTGTTGATTCTCCCGTTGCAAAACGCCACTTCTGC CCCGCCTCGTTCTCATGCGTGGTTCGCCCTCAACTGTGGTCTGTTGTGGG AACAGCGAATTGAGACGAGTCAGTACGTGACGTGTTTGTAACAGTGCGTT CAAactaagaacaaaagaaaattctttggtCACAAATCTTatcaaaattt gtacaaaatcaaatcaaattgtcCTCAATCTGATAAAATGAATATTcaca aatctcagtgaaaatagaaaatattgttTGACAAGCCAAATATTCTAAGT CTAGAAAATAGGGCAAAAATATCAAACTTAATAAAATGAAATGTTATCTT ACCAGCGTGCGACTGCATGAATGCTGTGTATAAAACGTCTCAAGAACACT ACACCACAATTTCAAGGTGACAGTGAAAAGTTATCAATATTGTTCatcaa acataaaatcaaaGACAAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000202XLOC_000202Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000328-exon-sc0000001-1491911889:1318969..1319539TCONS_00000328-exon-sc0000001-1491911889:1318969..1319539Clytia hemisphaericaexon
TCONS_00000328-exon-sc0000001-1510915933:1318969..1319539TCONS_00000328-exon-sc0000001-1510915933:1318969..1319539Clytia hemisphaericaexon
TCONS_00000328-exon-sc0000001-1575043694:1318969..1319539TCONS_00000328-exon-sc0000001-1575043694:1318969..1319539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1318969..1319539 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10191 0.85931 1.14837 1.37812 0.306914 0.417754 0.134761 0.615129 0.698551 0.980908 0.198584 0.669177 0.874359 0.232077 0.164969 0.332456 0.272362 0.634888 0 0.288176 0.881468 0.684773 0.157945 0.68807 1.93728 1.20768 0.806304 0.661402 0.139346 0.701905
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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