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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000327 ID=TCONS_00000327|Name=TCONS_00000327|organism=Clytia hemisphaerica|type=transcript|length=2459bp
ATTAATTGTCAAGAGACATTGAATAAAGAAATGACGTGAGACCAAAACAA
AAGACTGAAATGAAAGACACAAAAGACACTGACATGAAGGGACGCACAAG
ACACGgagtgaaattaaatttttgtccatttttctaagtaAAATAAAATC
GCATGGTTTGACATGCACAACATTCCCCCACCATGGGCCAAAAATTTGAT
CATAGTTGACCAAGATGACAATTTTCTCCCAGGTAGTTAAGTTCCGAGCT
TGAACTAGTCAGGGTCATAAAATGAATTAATCACAACGAGACTGCTACGA
ATCACAACGAGTCTGCTACGTTTGACGATTTCGTTTATATACGTTTGATC
TATGACGGATGACGTTAAGAAGTAGCAACAGATGAGTTGGAATTTTTCCA
GTGTTGATTTCACGAGGCTGGATAAGTGTGAATCGTGTAAACCACTGAAG
TCCATTTGGAATGGATACAATACTGATAAGTTGGTTGAAAGACGATTGAT
GATTGGTATCCAGATTGCAGATTGAGATANCTGATAAGTTTGTTGAAAGA
CGATTGATGATTAGTATCCAGATTGCAGATTGAGATAGACTGACTGTTGA
ATTCGTGAGTTTGAATGCTTTCGAGATACTTGACCTTCTTTGGATGAAAA
AACCAATGACATGATTAAGGTTTGACGTGATTTCGTTGGACTTTGCTGGC
GATGATGAGAAAGACTTGACAATTTGATCGTTTGGTATTATTTGATTTGA
TTCGTTGAAATTTGGGATCTGTGACATAACTGATGCTTTTATACCATTTT
TCCCGTTAAGTTTGTTAAGTTTGTGAGGCATTTGATCGACTTTGATTGCG
ATATTCATGTGATTGGATGAGTCAGTAATGGGTGACTGAGTTGATTTGAT
CGATCGAGTCTTCGACGAAATTTCGATAGGCGAGTCGATTGGATGTTCTT
TTTGATCGTTGATGTTGATTGATTGGTTAGATTGATCCTCTTTACTTTGA
GTGAAGTATTTCAAAGATGTTGGGTGGTCTGCATTGAATCCGAGTAAAGG
AGTTTTGATTGGATGGATCGTATTATGATAAACTGATGTGAAGTTTGAAG
ATACATTGAAACAACTGAAGGAAGGGTGTGGACCAGCGATTACTCCTCTT
CCACCGCTTGAACTAGTAAATAGTGATTCGAGTATTGTCAGTCCTGATGG
CATTTGATAAACGTGTTTTGGGAAGTACTTCAGATGCTTGACGCCAATCA
TCATATGAACGTCACCACCAATTGAGGAATGTGATCTTTTTCGTCCAAGT
TTCTCTGGGTGTGAAGTCATCTTCATAGGTTTCTGAAAGGAATCGCGTCG
TTCTGCCATCTCCAAGAAGATTTTGAATGTGAGTGANAAGCGCGGAAGTT
TCGGTAATGATTTGAGTCCACCAGCTTTTGAATACGATTCGTCGATGTCT
TTGTGAGCTTCGATGAGTGAAAAAGTTGGAAATGTTGATGTGATTTTTGG
GATGCAGGGTCCGGTAAACGAAACCATTCCTCCATTGCTCAGTGGAAGTT
TGACGATATAACGACCAAGTGTTGACTTTGTAATACTGTTTCCAACACCA
CCAAGAATGACTGGTTTTGACGACGCTTTGATTGCATTTGATCCAAGTAG
CTTGATTGCTTTTTGGCTGACAACAAAGTCACTACAACCATTATCAAAGA
AAATGAGGagcttgttttgattgatttgaatttCTTGGAGCATATAGATA
CCTCTGTCTCCATCTTCGTCAACAGTTTGGAATGATTCAGTGTGAAATGA
TAAACTGATGTTTTTCGTAAAGCTTGGAAGATCTGGATTTCTGAAGAACC
TCTCCTTAAATTGCTCGAGCAACTCGACATTGGCAGGCTCCTCCTTGTGT
TCCTCACAAACCAAGACGTGTTTTCGGACTGAATACTTTTGATGCGATTC
GTCGGGACAAACGAAGTCGTGTTGGCATTTACCATCCTTGTGTTTTCCAG
ATGCACTGGCTGCACCTGGAAACAAACATTGAAAGCAGTAccactttgat
ttcaaaagggAGAGGCGACTTGCAGGTGTCATTTCTGCAAACAGTTGACA
AGTGTAATATTGAATTAATCTCGTCTGGCCTGGGCCTGATGTGGCAACAT
GATGATCTACTCCAGCAGGTGTTTCACACAAAGCACATAGAGGATTTGAG
GTATCAGAGACATAAGAATTAGGATGTCCGTACCTCGTATCCTTGGTGTT
CTTTGATGAATCCTTCGGTTTGTTATTGTCGTTTGATTTTGATGAGTCGT
CTCGAAGGATAAGTTTTTGTTCAGCTATTCGACGTTCTTTCGTAAGGAAT
GTGATCATTTTCGTCCAAGTTTCTCTGGGTGTGAAGTCATCTTCATAGGT
TTCTGAAAGGAATCGCGTCGTTCTGCCATCTCCAAGAAGATTTTGAATGT
GAGTGAGGG Run BLAST on NCBI protein sequence of TCONS_00000327-protein >TCONS_00000327-protein ID=TCONS_00000327-protein|Name=TCONS_00000327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp
LTHIQNLLGDGRTTRFLSETYEDDFTPRETWTKMITFLTKERRIAEQKLI
LRDDSSKSNDNNKPKDSSKNTKDTRYGHPNSYVSDTSNPLCALCETPAGV
DHHVATSGPGQTRLIQYYTCQLFAEMTPASRLSLLKSKWYCFQCLFPGAA
SASGKHKDGKCQHDFVCPDESHQKYSVRKHVLVCEEHKEEPANVELLEQF
KERFFRNPDLPSFTKNISLSFHTESFQTVDEDGDRGIYMLQEIQINQNKL
LIFFDNGCSDFVVSQKAIKLLGSNAIKASSKPVILGGVGNSITKSTLGRY
IVKLPLSNGGMVSFTGPCIPKITSTFPTFSLIEAHKDIDESYSKAGGLKS
LPKLPRXSLTFKIFLEMAERRDSFQKPMKMTSHPEKLGRKRSHSSIGGDV
HMMIGVKHLKYFPKHVYQMPSGLTILESLFTSSSGGRGVIAGPHPSFSCF
NVSSNFTSVYHNTIHPIKTPLLGFNADHPTSLKYFTQSKEDQSNQSININ
DQKEHPIDSPIEISSKTRSIKSTQSPITDSSNHMNIAIKVDQMPHKLNKL
NGKNGIKASVMSQIPNFNESNQIIPNDQIVKSFSSSPAKSNEITSNLNHV
IGFFIQRRSSISKAFKLTNSTVSLSQSAIWILIINRLSTNLSXISICNLD
TNHQSSFNQLISIVSIPNGLQWFTRFTLIQPREINTGKIPTHLLLLLNVI
RHRSNVYKRNRQT Run BLAST on NCBI transcript from alignment at sc0000001:1310508..1312966 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000327 ID=TCONS_00000327|Name=TCONS_00000327|organism=Clytia hemisphaerica|type=transcript|length=2459bp|location=Sequence derived from alignment at sc0000001:1310508..1312966 (Clytia hemisphaerica)
CCCTCACTCACATTCAAAATCTTCTTGGAGATGGCAGAACGACGCGATTC
CTTTCAGAAACCTATGAAGATGACTTCACACCCAGAGAAACTTGGACGAA
AATGATCACATTCCTTACGAAAGAACGTCGAATAGCTGAACAAAAACTTA
TCCTTCGAGACGACTCATCAAAATCAAACGACAATAACAAACCGAAGGAT
TCATCAAAGAACACCAAGGATACGAGGTACGGACATCCTAATTCTTATGT
CTCTGATACCTCAAATCCTCTATGTGCTTTGTGTGAAACACCTGCTGGAG
TAGATCATCATGTTGCCACATCAGGCCCAGGCCAGACGAGATTAATTCAA
TATTACACTTGTCAACTGTTTGCAGAAATGACACCTGCAAGTCGCCTCTc
ccttttgaaatcaaagtggTACTGCTTTCAATGTTTGTTTCCAGGTGCAG
CCAGTGCATCTGGAAAACACAAGGATGGTAAATGCCAACACGACTTCGTT
TGTCCCGACGAATCGCATCAAAAGTATTCAGTCCGAAAACACGTCTTGGT
TTGTGAGGAACACAAGGAGGAGCCTGCCAATGTCGAGTTGCTCGAGCAAT
TTAAGGAGAGGTTCTTCAGAAATCCAGATCTTCCAAGCTTTACGAAAAAC
ATCAGTTTATCATTTCACACTGAATCATTCCAAACTGTTGACGAAGATGG
AGACAGAGGTATCTATATGCTCCAAGaaattcaaatcaatcaaaacaagc
tCCTCATTTTCTTTGATAATGGTTGTAGTGACTTTGTTGTCAGCCAAAAA
GCAATCAAGCTACTTGGATCAAATGCAATCAAAGCGTCGTCAAAACCAGT
CATTCTTGGTGGTGTTGGAAACAGTATTACAAAGTCAACACTTGGTCGTT
ATATCGTCAAACTTCCACTGAGCAATGGAGGAATGGTTTCGTTTACCGGA
CCCTGCATCCCAAAAATCACATCAACATTTCCAACTTTTTCACTCATCGA
AGCTCACAAAGACATCGACGAATCGTATTCAAAAGCTGGTGGACTCAAAT
CATTACCGAAACTTCCGCGCTTNTCACTCACATTCAAAATCTTCTTGGAG
ATGGCAGAACGACGCGATTCCTTTCAGAAACCTATGAAGATGACTTCACA
CCCAGAGAAACTTGGACGAAAAAGATCACATTCCTCAATTGGTGGTGACG
TTCATATGATGATTGGCGTCAAGCATCTGAAGTACTTCCCAAAACACGTT
TATCAAATGCCATCAGGACTGACAATACTCGAATCACTATTTACTAGTTC
AAGCGGTGGAAGAGGAGTAATCGCTGGTCCACACCCTTCCTTCAGTTGTT
TCAATGTATCTTCAAACTTCACATCAGTTTATCATAATACGATCCATCCA
ATCAAAACTCCTTTACTCGGATTCAATGCAGACCACCCAACATCTTTGAA
ATACTTCACTCAAAGTAAAGAGGATCAATCTAACCAATCAATCAACATCA
ACGATCAAAAAGAACATCCAATCGACTCGCCTATCGAAATTTCGTCGAAG
ACTCGATCGATCAAATCAACTCAGTCACCCATTACTGACTCATCCAATCA
CATGAATATCGCAATCAAAGTCGATCAAATGCCTCACAAACTTAACAAAC
TTAACGGGAAAAATGGTATAAAAGCATCAGTTATGTCACAGATCCCAAAT
TTCAACGAATCAAATCAAATAATACCAAACGATCAAATTGTCAAGTCTTT
CTCATCATCGCCAGCAAAGTCCAACGAAATCACGTCAAACCTTAATCATG
TCATTGGTTTTTTCATCCAAAGAAGGTCAAGTATCTCGAAAGCATTCAAA
CTCACGAATTCAACAGTCAGTCTATCTCAATCTGCAATCTGGATACTAAT
CATCAATCGTCTTTCAACAAACTTATCAGNTATCTCAATCTGCAATCTGG
ATACCAATCATCAATCGTCTTTCAACCAACTTATCAGTATTGTATCCATT
CCAAATGGACTTCAGTGGTTTACACGATTCACACTTATCCAGCCTCGTGA
AATCAACACTGGAAAAATTCCAACTCATCTGTTGCTACTTCTTAACGTCA
TCCGTCATAGATCAAACGTATATAAACGAAATCGTCAAACGTAGCAGACT
CGTTGTGATTCGTAGCAGTCTCGTTGTGATTAATTCATTTTATGACCCTG
ACTAGTTCAAGCTCGGAACTTAACTACCTGGGAGAAAATTGTCATCTTGG
TCAACTATGATCAAATTTTTGGCCCATGGTGGGGGAATGTTGTGCATGTC
AAACCATGCGATTTTATTTtacttagaaaaatggacaaaaatttaatttc
actcCGTGTCTTGTGCGTCCCTTCATGTCAGTGTCTTTTGTGTCTTTCAT
TTCAGTCTTTTGTTTTGGTCTCACGTCATTTCTTTATTCAATGTCTCTTG
ACAATTAAT Coding sequence (CDS) from alignment at sc0000001:1310508..1312966 >TCONS_00000327 ID=TCONS_00000327|Name=TCONS_00000327|organism=Clytia hemisphaerica|type=CDS|length=2142bp|location=Sequence derived from alignment at sc0000001:1310508..1312966 (Clytia hemisphaerica)
CTCACTCACATTCAAAATCTTCTTGGAGATGGCAGAACGACGCGATTCCT
TTCAGAAACCTATGAAGATGACTTCACACCCAGAGAAACTTGGACGAAAA
TGATCACATTCCTTACGAAAGAACGTCGAATAGCTGAACAAAAACTTATC
CTTCGAGACGACTCATCAAAATCAAACGACAATAACAAACCGAAGGATTC
ATCAAAGAACACCAAGGATACGAGGTACGGACATCCTAATTCTTATGTCT
CTGATACCTCAAATCCTCTATGTGCTTTGTGTGAAACACCTGCTGGAGTA
GATCATCATGTTGCCACATCAGGCCCAGGCCAGACGAGATTAATTCAATA
TTACACTTGTCAACTGTTTGCAGAAATGACACCTGCAAGTCGCCTCTccc
ttttgaaatcaaagtggTACTGCTTTCAATGTTTGTTTCCAGGTGCAGCC
AGTGCATCTGGAAAACACAAGGATGGTAAATGCCAACACGACTTCGTTTG
TCCCGACGAATCGCATCAAAAGTATTCAGTCCGAAAACACGTCTTGGTTT
GTGAGGAACACAAGGAGGAGCCTGCCAATGTCGAGTTGCTCGAGCAATTT
AAGGAGAGGTTCTTCAGAAATCCAGATCTTCCAAGCTTTACGAAAAACAT
CAGTTTATCATTTCACACTGAATCATTCCAAACTGTTGACGAAGATGGAG
ACAGAGGTATCTATATGCTCCAAGaaattcaaatcaatcaaaacaagctC
CTCATTTTCTTTGATAATGGTTGTAGTGACTTTGTTGTCAGCCAAAAAGC
AATCAAGCTACTTGGATCAAATGCAATCAAAGCGTCGTCAAAACCAGTCA
TTCTTGGTGGTGTTGGAAACAGTATTACAAAGTCAACACTTGGTCGTTAT
ATCGTCAAACTTCCACTGAGCAATGGAGGAATGGTTTCGTTTACCGGACC
CTGCATCCCAAAAATCACATCAACATTTCCAACTTTTTCACTCATCGAAG
CTCACAAAGACATCGACGAATCGTATTCAAAAGCTGGTGGACTCAAATCA
TTACCGAAACTTCCGCGCTTNTCACTCACATTCAAAATCTTCTTGGAGAT
GGCAGAACGACGCGATTCCTTTCAGAAACCTATGAAGATGACTTCACACC
CAGAGAAACTTGGACGAAAAAGATCACATTCCTCAATTGGTGGTGACGTT
CATATGATGATTGGCGTCAAGCATCTGAAGTACTTCCCAAAACACGTTTA
TCAAATGCCATCAGGACTGACAATACTCGAATCACTATTTACTAGTTCAA
GCGGTGGAAGAGGAGTAATCGCTGGTCCACACCCTTCCTTCAGTTGTTTC
AATGTATCTTCAAACTTCACATCAGTTTATCATAATACGATCCATCCAAT
CAAAACTCCTTTACTCGGATTCAATGCAGACCACCCAACATCTTTGAAAT
ACTTCACTCAAAGTAAAGAGGATCAATCTAACCAATCAATCAACATCAAC
GATCAAAAAGAACATCCAATCGACTCGCCTATCGAAATTTCGTCGAAGAC
TCGATCGATCAAATCAACTCAGTCACCCATTACTGACTCATCCAATCACA
TGAATATCGCAATCAAAGTCGATCAAATGCCTCACAAACTTAACAAACTT
AACGGGAAAAATGGTATAAAAGCATCAGTTATGTCACAGATCCCAAATTT
CAACGAATCAAATCAAATAATACCAAACGATCAAATTGTCAAGTCTTTCT
CATCATCGCCAGCAAAGTCCAACGAAATCACGTCAAACCTTAATCATGTC
ATTGGTTTTTTCATCCAAAGAAGGTCAAGTATCTCGAAAGCATTCAAACT
CACGAATTCAACAGTCAGTCTATCTCAATCTGCAATCTGGATACTAATCA
TCAATCGTCTTTCAACAAACTTATCAGNTATCTCAATCTGCAATCTGGAT
ACCAATCATCAATCGTCTTTCAACCAACTTATCAGTATTGTATCCATTCC
AAATGGACTTCAGTGGTTTACACGATTCACACTTATCCAGCCTCGTGAAA
TCAACACTGGAAAAATTCCAACTCATCTGTTGCTACTTCTTAACGTCATC
CGTCATAGATCAAACGTATATAAACGAAATCGTCAAACGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000327-exon-sc0000001-1491911889:1310508..1312966 | TCONS_00000327-exon-sc0000001-1491911889:1310508..1312966 | Clytia hemisphaerica | exon |
| TCONS_00000327-exon-sc0000001-1510915933:1310508..1312966 | TCONS_00000327-exon-sc0000001-1510915933:1310508..1312966 | Clytia hemisphaerica | exon |
| TCONS_00000327-exon-sc0000001-1575043694:1310508..1312966 | TCONS_00000327-exon-sc0000001-1575043694:1310508..1312966 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1310508..1312966 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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