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TCONS_00000327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000327
Unique NameTCONS_00000327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000327 ID=TCONS_00000327|Name=TCONS_00000327|organism=Clytia hemisphaerica|type=transcript|length=2459bp
ATTAATTGTCAAGAGACATTGAATAAAGAAATGACGTGAGACCAAAACAA
AAGACTGAAATGAAAGACACAAAAGACACTGACATGAAGGGACGCACAAG
ACACGgagtgaaattaaatttttgtccatttttctaagtaAAATAAAATC
GCATGGTTTGACATGCACAACATTCCCCCACCATGGGCCAAAAATTTGAT
CATAGTTGACCAAGATGACAATTTTCTCCCAGGTAGTTAAGTTCCGAGCT
TGAACTAGTCAGGGTCATAAAATGAATTAATCACAACGAGACTGCTACGA
ATCACAACGAGTCTGCTACGTTTGACGATTTCGTTTATATACGTTTGATC
TATGACGGATGACGTTAAGAAGTAGCAACAGATGAGTTGGAATTTTTCCA
GTGTTGATTTCACGAGGCTGGATAAGTGTGAATCGTGTAAACCACTGAAG
TCCATTTGGAATGGATACAATACTGATAAGTTGGTTGAAAGACGATTGAT
GATTGGTATCCAGATTGCAGATTGAGATANCTGATAAGTTTGTTGAAAGA
CGATTGATGATTAGTATCCAGATTGCAGATTGAGATAGACTGACTGTTGA
ATTCGTGAGTTTGAATGCTTTCGAGATACTTGACCTTCTTTGGATGAAAA
AACCAATGACATGATTAAGGTTTGACGTGATTTCGTTGGACTTTGCTGGC
GATGATGAGAAAGACTTGACAATTTGATCGTTTGGTATTATTTGATTTGA
TTCGTTGAAATTTGGGATCTGTGACATAACTGATGCTTTTATACCATTTT
TCCCGTTAAGTTTGTTAAGTTTGTGAGGCATTTGATCGACTTTGATTGCG
ATATTCATGTGATTGGATGAGTCAGTAATGGGTGACTGAGTTGATTTGAT
CGATCGAGTCTTCGACGAAATTTCGATAGGCGAGTCGATTGGATGTTCTT
TTTGATCGTTGATGTTGATTGATTGGTTAGATTGATCCTCTTTACTTTGA
GTGAAGTATTTCAAAGATGTTGGGTGGTCTGCATTGAATCCGAGTAAAGG
AGTTTTGATTGGATGGATCGTATTATGATAAACTGATGTGAAGTTTGAAG
ATACATTGAAACAACTGAAGGAAGGGTGTGGACCAGCGATTACTCCTCTT
CCACCGCTTGAACTAGTAAATAGTGATTCGAGTATTGTCAGTCCTGATGG
CATTTGATAAACGTGTTTTGGGAAGTACTTCAGATGCTTGACGCCAATCA
TCATATGAACGTCACCACCAATTGAGGAATGTGATCTTTTTCGTCCAAGT
TTCTCTGGGTGTGAAGTCATCTTCATAGGTTTCTGAAAGGAATCGCGTCG
TTCTGCCATCTCCAAGAAGATTTTGAATGTGAGTGANAAGCGCGGAAGTT
TCGGTAATGATTTGAGTCCACCAGCTTTTGAATACGATTCGTCGATGTCT
TTGTGAGCTTCGATGAGTGAAAAAGTTGGAAATGTTGATGTGATTTTTGG
GATGCAGGGTCCGGTAAACGAAACCATTCCTCCATTGCTCAGTGGAAGTT
TGACGATATAACGACCAAGTGTTGACTTTGTAATACTGTTTCCAACACCA
CCAAGAATGACTGGTTTTGACGACGCTTTGATTGCATTTGATCCAAGTAG
CTTGATTGCTTTTTGGCTGACAACAAAGTCACTACAACCATTATCAAAGA
AAATGAGGagcttgttttgattgatttgaatttCTTGGAGCATATAGATA
CCTCTGTCTCCATCTTCGTCAACAGTTTGGAATGATTCAGTGTGAAATGA
TAAACTGATGTTTTTCGTAAAGCTTGGAAGATCTGGATTTCTGAAGAACC
TCTCCTTAAATTGCTCGAGCAACTCGACATTGGCAGGCTCCTCCTTGTGT
TCCTCACAAACCAAGACGTGTTTTCGGACTGAATACTTTTGATGCGATTC
GTCGGGACAAACGAAGTCGTGTTGGCATTTACCATCCTTGTGTTTTCCAG
ATGCACTGGCTGCACCTGGAAACAAACATTGAAAGCAGTAccactttgat
ttcaaaagggAGAGGCGACTTGCAGGTGTCATTTCTGCAAACAGTTGACA
AGTGTAATATTGAATTAATCTCGTCTGGCCTGGGCCTGATGTGGCAACAT
GATGATCTACTCCAGCAGGTGTTTCACACAAAGCACATAGAGGATTTGAG
GTATCAGAGACATAAGAATTAGGATGTCCGTACCTCGTATCCTTGGTGTT
CTTTGATGAATCCTTCGGTTTGTTATTGTCGTTTGATTTTGATGAGTCGT
CTCGAAGGATAAGTTTTTGTTCAGCTATTCGACGTTCTTTCGTAAGGAAT
GTGATCATTTTCGTCCAAGTTTCTCTGGGTGTGAAGTCATCTTCATAGGT
TTCTGAAAGGAATCGCGTCGTTCTGCCATCTCCAAGAAGATTTTGAATGT
GAGTGAGGG
Run BLAST on NCBI

protein sequence of TCONS_00000327-protein

>TCONS_00000327-protein ID=TCONS_00000327-protein|Name=TCONS_00000327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp
LTHIQNLLGDGRTTRFLSETYEDDFTPRETWTKMITFLTKERRIAEQKLI
LRDDSSKSNDNNKPKDSSKNTKDTRYGHPNSYVSDTSNPLCALCETPAGV
DHHVATSGPGQTRLIQYYTCQLFAEMTPASRLSLLKSKWYCFQCLFPGAA
SASGKHKDGKCQHDFVCPDESHQKYSVRKHVLVCEEHKEEPANVELLEQF
KERFFRNPDLPSFTKNISLSFHTESFQTVDEDGDRGIYMLQEIQINQNKL
LIFFDNGCSDFVVSQKAIKLLGSNAIKASSKPVILGGVGNSITKSTLGRY
IVKLPLSNGGMVSFTGPCIPKITSTFPTFSLIEAHKDIDESYSKAGGLKS
LPKLPRXSLTFKIFLEMAERRDSFQKPMKMTSHPEKLGRKRSHSSIGGDV
HMMIGVKHLKYFPKHVYQMPSGLTILESLFTSSSGGRGVIAGPHPSFSCF
NVSSNFTSVYHNTIHPIKTPLLGFNADHPTSLKYFTQSKEDQSNQSININ
DQKEHPIDSPIEISSKTRSIKSTQSPITDSSNHMNIAIKVDQMPHKLNKL
NGKNGIKASVMSQIPNFNESNQIIPNDQIVKSFSSSPAKSNEITSNLNHV
IGFFIQRRSSISKAFKLTNSTVSLSQSAIWILIINRLSTNLSXISICNLD
TNHQSSFNQLISIVSIPNGLQWFTRFTLIQPREINTGKIPTHLLLLLNVI
RHRSNVYKRNRQT
Run BLAST on NCBI

transcript from alignment at sc0000001:1310508..1312966

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000327 ID=TCONS_00000327|Name=TCONS_00000327|organism=Clytia hemisphaerica|type=transcript|length=2459bp|location=Sequence derived from alignment at sc0000001:1310508..1312966 (Clytia hemisphaerica)
CCCTCACTCACATTCAAAATCTTCTTGGAGATGGCAGAACGACGCGATTC CTTTCAGAAACCTATGAAGATGACTTCACACCCAGAGAAACTTGGACGAA AATGATCACATTCCTTACGAAAGAACGTCGAATAGCTGAACAAAAACTTA TCCTTCGAGACGACTCATCAAAATCAAACGACAATAACAAACCGAAGGAT TCATCAAAGAACACCAAGGATACGAGGTACGGACATCCTAATTCTTATGT CTCTGATACCTCAAATCCTCTATGTGCTTTGTGTGAAACACCTGCTGGAG TAGATCATCATGTTGCCACATCAGGCCCAGGCCAGACGAGATTAATTCAA TATTACACTTGTCAACTGTTTGCAGAAATGACACCTGCAAGTCGCCTCTc ccttttgaaatcaaagtggTACTGCTTTCAATGTTTGTTTCCAGGTGCAG CCAGTGCATCTGGAAAACACAAGGATGGTAAATGCCAACACGACTTCGTT TGTCCCGACGAATCGCATCAAAAGTATTCAGTCCGAAAACACGTCTTGGT TTGTGAGGAACACAAGGAGGAGCCTGCCAATGTCGAGTTGCTCGAGCAAT TTAAGGAGAGGTTCTTCAGAAATCCAGATCTTCCAAGCTTTACGAAAAAC ATCAGTTTATCATTTCACACTGAATCATTCCAAACTGTTGACGAAGATGG AGACAGAGGTATCTATATGCTCCAAGaaattcaaatcaatcaaaacaagc tCCTCATTTTCTTTGATAATGGTTGTAGTGACTTTGTTGTCAGCCAAAAA GCAATCAAGCTACTTGGATCAAATGCAATCAAAGCGTCGTCAAAACCAGT CATTCTTGGTGGTGTTGGAAACAGTATTACAAAGTCAACACTTGGTCGTT ATATCGTCAAACTTCCACTGAGCAATGGAGGAATGGTTTCGTTTACCGGA CCCTGCATCCCAAAAATCACATCAACATTTCCAACTTTTTCACTCATCGA AGCTCACAAAGACATCGACGAATCGTATTCAAAAGCTGGTGGACTCAAAT CATTACCGAAACTTCCGCGCTTNTCACTCACATTCAAAATCTTCTTGGAG ATGGCAGAACGACGCGATTCCTTTCAGAAACCTATGAAGATGACTTCACA CCCAGAGAAACTTGGACGAAAAAGATCACATTCCTCAATTGGTGGTGACG TTCATATGATGATTGGCGTCAAGCATCTGAAGTACTTCCCAAAACACGTT TATCAAATGCCATCAGGACTGACAATACTCGAATCACTATTTACTAGTTC AAGCGGTGGAAGAGGAGTAATCGCTGGTCCACACCCTTCCTTCAGTTGTT TCAATGTATCTTCAAACTTCACATCAGTTTATCATAATACGATCCATCCA ATCAAAACTCCTTTACTCGGATTCAATGCAGACCACCCAACATCTTTGAA ATACTTCACTCAAAGTAAAGAGGATCAATCTAACCAATCAATCAACATCA ACGATCAAAAAGAACATCCAATCGACTCGCCTATCGAAATTTCGTCGAAG ACTCGATCGATCAAATCAACTCAGTCACCCATTACTGACTCATCCAATCA CATGAATATCGCAATCAAAGTCGATCAAATGCCTCACAAACTTAACAAAC TTAACGGGAAAAATGGTATAAAAGCATCAGTTATGTCACAGATCCCAAAT TTCAACGAATCAAATCAAATAATACCAAACGATCAAATTGTCAAGTCTTT CTCATCATCGCCAGCAAAGTCCAACGAAATCACGTCAAACCTTAATCATG TCATTGGTTTTTTCATCCAAAGAAGGTCAAGTATCTCGAAAGCATTCAAA CTCACGAATTCAACAGTCAGTCTATCTCAATCTGCAATCTGGATACTAAT CATCAATCGTCTTTCAACAAACTTATCAGNTATCTCAATCTGCAATCTGG ATACCAATCATCAATCGTCTTTCAACCAACTTATCAGTATTGTATCCATT CCAAATGGACTTCAGTGGTTTACACGATTCACACTTATCCAGCCTCGTGA AATCAACACTGGAAAAATTCCAACTCATCTGTTGCTACTTCTTAACGTCA TCCGTCATAGATCAAACGTATATAAACGAAATCGTCAAACGTAGCAGACT CGTTGTGATTCGTAGCAGTCTCGTTGTGATTAATTCATTTTATGACCCTG ACTAGTTCAAGCTCGGAACTTAACTACCTGGGAGAAAATTGTCATCTTGG TCAACTATGATCAAATTTTTGGCCCATGGTGGGGGAATGTTGTGCATGTC AAACCATGCGATTTTATTTtacttagaaaaatggacaaaaatttaatttc actcCGTGTCTTGTGCGTCCCTTCATGTCAGTGTCTTTTGTGTCTTTCAT TTCAGTCTTTTGTTTTGGTCTCACGTCATTTCTTTATTCAATGTCTCTTG ACAATTAAT

Coding sequence (CDS) from alignment at sc0000001:1310508..1312966

>TCONS_00000327 ID=TCONS_00000327|Name=TCONS_00000327|organism=Clytia hemisphaerica|type=CDS|length=2142bp|location=Sequence derived from alignment at sc0000001:1310508..1312966 (Clytia hemisphaerica)
CTCACTCACATTCAAAATCTTCTTGGAGATGGCAGAACGACGCGATTCCT
TTCAGAAACCTATGAAGATGACTTCACACCCAGAGAAACTTGGACGAAAA
TGATCACATTCCTTACGAAAGAACGTCGAATAGCTGAACAAAAACTTATC
CTTCGAGACGACTCATCAAAATCAAACGACAATAACAAACCGAAGGATTC
ATCAAAGAACACCAAGGATACGAGGTACGGACATCCTAATTCTTATGTCT
CTGATACCTCAAATCCTCTATGTGCTTTGTGTGAAACACCTGCTGGAGTA
GATCATCATGTTGCCACATCAGGCCCAGGCCAGACGAGATTAATTCAATA
TTACACTTGTCAACTGTTTGCAGAAATGACACCTGCAAGTCGCCTCTccc
ttttgaaatcaaagtggTACTGCTTTCAATGTTTGTTTCCAGGTGCAGCC
AGTGCATCTGGAAAACACAAGGATGGTAAATGCCAACACGACTTCGTTTG
TCCCGACGAATCGCATCAAAAGTATTCAGTCCGAAAACACGTCTTGGTTT
GTGAGGAACACAAGGAGGAGCCTGCCAATGTCGAGTTGCTCGAGCAATTT
AAGGAGAGGTTCTTCAGAAATCCAGATCTTCCAAGCTTTACGAAAAACAT
CAGTTTATCATTTCACACTGAATCATTCCAAACTGTTGACGAAGATGGAG
ACAGAGGTATCTATATGCTCCAAGaaattcaaatcaatcaaaacaagctC
CTCATTTTCTTTGATAATGGTTGTAGTGACTTTGTTGTCAGCCAAAAAGC
AATCAAGCTACTTGGATCAAATGCAATCAAAGCGTCGTCAAAACCAGTCA
TTCTTGGTGGTGTTGGAAACAGTATTACAAAGTCAACACTTGGTCGTTAT
ATCGTCAAACTTCCACTGAGCAATGGAGGAATGGTTTCGTTTACCGGACC
CTGCATCCCAAAAATCACATCAACATTTCCAACTTTTTCACTCATCGAAG
CTCACAAAGACATCGACGAATCGTATTCAAAAGCTGGTGGACTCAAATCA
TTACCGAAACTTCCGCGCTTNTCACTCACATTCAAAATCTTCTTGGAGAT
GGCAGAACGACGCGATTCCTTTCAGAAACCTATGAAGATGACTTCACACC
CAGAGAAACTTGGACGAAAAAGATCACATTCCTCAATTGGTGGTGACGTT
CATATGATGATTGGCGTCAAGCATCTGAAGTACTTCCCAAAACACGTTTA
TCAAATGCCATCAGGACTGACAATACTCGAATCACTATTTACTAGTTCAA
GCGGTGGAAGAGGAGTAATCGCTGGTCCACACCCTTCCTTCAGTTGTTTC
AATGTATCTTCAAACTTCACATCAGTTTATCATAATACGATCCATCCAAT
CAAAACTCCTTTACTCGGATTCAATGCAGACCACCCAACATCTTTGAAAT
ACTTCACTCAAAGTAAAGAGGATCAATCTAACCAATCAATCAACATCAAC
GATCAAAAAGAACATCCAATCGACTCGCCTATCGAAATTTCGTCGAAGAC
TCGATCGATCAAATCAACTCAGTCACCCATTACTGACTCATCCAATCACA
TGAATATCGCAATCAAAGTCGATCAAATGCCTCACAAACTTAACAAACTT
AACGGGAAAAATGGTATAAAAGCATCAGTTATGTCACAGATCCCAAATTT
CAACGAATCAAATCAAATAATACCAAACGATCAAATTGTCAAGTCTTTCT
CATCATCGCCAGCAAAGTCCAACGAAATCACGTCAAACCTTAATCATGTC
ATTGGTTTTTTCATCCAAAGAAGGTCAAGTATCTCGAAAGCATTCAAACT
CACGAATTCAACAGTCAGTCTATCTCAATCTGCAATCTGGATACTAATCA
TCAATCGTCTTTCAACAAACTTATCAGNTATCTCAATCTGCAATCTGGAT
ACCAATCATCAATCGTCTTTCAACCAACTTATCAGTATTGTATCCATTCC
AAATGGACTTCAGTGGTTTACACGATTCACACTTATCCAGCCTCGTGAAA
TCAACACTGGAAAAATTCCAACTCATCTGTTGCTACTTCTTAACGTCATC
CGTCATAGATCAAACGTATATAAACGAAATCGTCAAACGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000201XLOC_000201Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000327-proteinTCONS_00000327-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000327-exon-sc0000001-1491911889:1310508..1312966TCONS_00000327-exon-sc0000001-1491911889:1310508..1312966Clytia hemisphaericaexon
TCONS_00000327-exon-sc0000001-1510915933:1310508..1312966TCONS_00000327-exon-sc0000001-1510915933:1310508..1312966Clytia hemisphaericaexon
TCONS_00000327-exon-sc0000001-1575043694:1310508..1312966TCONS_00000327-exon-sc0000001-1575043694:1310508..1312966Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1310508..1312966 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.638983 0.288764 0.659182 0.53772 1.86741 1.61984 1.25462 1.87753 1.11696 1.4527 1.19903 1.32276 1.16288 1.53227 2.22188 2.02118 2.77123 2.79747 2.28465 3.71676 3.65848 4.70079 1.7969 2.14263 0.11464 0.216446 3.23211 2.6498 3.26901 3.08811
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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