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TCONS_00000324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000324
Unique NameTCONS_00000324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000324 ID=TCONS_00000324|Name=TCONS_00000324|organism=Clytia hemisphaerica|type=transcript|length=508bp
CGAGTACATAATTATTATAATCGCCTTCAGGACCAAAACATTGTTGCGAT
TCATTGGTGAATGTCATTTTTAAACCATCATTACCTATATAAATATCTTT
GAAAGGTCGATATTCTTTCTCAACATTGTCAGCAGATAACAGGTCATCGA
CTGCATCAATTGGGTAATTGTTCGGCACCCCATTCAGATTGGATCTCCAA
TAAGCTGTTCTCTCCACAGGTCGGCTATCACTTTCTCCTGAGAAATATCG
TATAACATTGAAATCGGTAGCAGAAGATTGTCTTTTGTTGCCCAGTATAA
CTAAATCTGTTGTGTTTCGAACACATTTCATACGTATGGTTTCAAAGTTC
ATTAGTATTTTAGCCATGCGTAGAAAGGACGCATGCGCGCGATAATTATT
CTCAAGCACAAGACCATCTTCCATTGACGCAGCTGTTAGTTCCTTCACTG
GAGTTTGGATTGTTGTGTCCATTTGGGTAAATCTCATAGTTCTTCCTTAt
ttcagaaa
Run BLAST on NCBI

protein sequence of TCONS_00000324-protein

>TCONS_00000324-protein ID=TCONS_00000324-protein|Name=TCONS_00000324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MRFTQMDTTIQTPVKELTAASMEDGLVLENNYRAHASFLRMAKILMNFET
IRMKCVRNTTDLVILGNKRQSSATDFNVIRYFSGESDSRPVERTAYWRSN
LNGVPNNYPIDAVDDLLSADNVEKEYRPFKDIYIGNDGLKMTFTNESQQC
FGPEGDYNNYVL
Run BLAST on NCBI

transcript from alignment at sc0000001:1199940..1200447

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000324 ID=TCONS_00000324|Name=TCONS_00000324|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0000001:1199940..1200447 (Clytia hemisphaerica)
tttctgaaaTAAGGAAGAACTATGAGATTTACCCAAATGGACACAACAAT CCAAACTCCAGTGAAGGAACTAACAGCTGCGTCAATGGAAGATGGTCTTG TGCTTGAGAATAATTATCGCGCGCATGCGTCCTTTCTACGCATGGCTAAA ATACTAATGAACTTTGAAACCATACGTATGAAATGTGTTCGAAACACAAC AGATTTAGTTATACTGGGCAACAAAAGACAATCTTCTGCTACCGATTTCA ATGTTATACGATATTTCTCAGGAGAAAGTGATAGCCGACCTGTGGAGAGA ACAGCTTATTGGAGATCCAATCTGAATGGGGTGCCGAACAATTACCCAAT TGATGCAGTCGATGACCTGTTATCTGCTGACAATGTTGAGAAAGAATATC GACCTTTCAAAGATATTTATATAGGTAATGATGGTTTAAAAATGACATTC ACCAATGAATCGCAACAATGTTTTGGTCCTGAAGGCGATTATAATAATTA TGTACTCG

Coding sequence (CDS) from alignment at sc0000001:1199940..1200447

>TCONS_00000324 ID=TCONS_00000324|Name=TCONS_00000324|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000001:1199940..1200447 (Clytia hemisphaerica)
ATGAGATTTACCCAAATGGACACAACAATCCAAACTCCAGTGAAGGAACT
AACAGCTGCGTCAATGGAAGATGGTCTTGTGCTTGAGAATAATTATCGCG
CGCATGCGTCCTTTCTACGCATGGCTAAAATACTAATGAACTTTGAAACC
ATACGTATGAAATGTGTTCGAAACACAACAGATTTAGTTATACTGGGCAA
CAAAAGACAATCTTCTGCTACCGATTTCAATGTTATACGATATTTCTCAG
GAGAAAGTGATAGCCGACCTGTGGAGAGAACAGCTTATTGGAGATCCAAT
CTGAATGGGGTGCCGAACAATTACCCAATTGATGCAGTCGATGACCTGTT
ATCTGCTGACAATGTTGAGAAAGAATATCGACCTTTCAAAGATATTTATA
TAGGTAATGATGGTTTAAAAATGACATTCACCAATGAATCGCAACAATGT
TTTGGTCCTGAAGGCGATTATAATAATTATGTACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000198XLOC_000198Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000324-proteinTCONS_00000324-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000324-exon-sc0000001-1491911889:1199940..1200447TCONS_00000324-exon-sc0000001-1491911889:1199940..1200447Clytia hemisphaericaexon
TCONS_00000324-exon-sc0000001-1510915933:1199940..1200447TCONS_00000324-exon-sc0000001-1510915933:1199940..1200447Clytia hemisphaericaexon
TCONS_00000324-exon-sc0000001-1575043694:1199940..1200447TCONS_00000324-exon-sc0000001-1575043694:1199940..1200447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1199940..1200447 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.946969 0.126444 0 0 0 0 0.287823 0.395117 2.07777 3.0098 0.134752 0.40892 1.15242 0.785362 3.00474 4.7211 1.60177 2.03252 0.722634 1.41834 1.38523 3.59465 2.0928 0.173637 0 0.477423
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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