TCONS_00000320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000320
Unique NameTCONS_00000320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000320 ID=TCONS_00000320|Name=TCONS_00000320|organism=Clytia hemisphaerica|type=transcript|length=230bp
TGGGCGATAAAATAACAGTATTTCCCTTCAGACTTTAAACCACAAGCAGA
ATACATATTAAAAGTGTTTCAAGCAATAGAATAGAATTAGCAATCTTAAA
CCGTGGTCCGTTCGGGATTGGTTATCCAGAATTTCTCTCGTCAGAACGCT
AGCGACCTTGGTCAGTCGTGATGGCTCGGTGGCGCCTAAAGTCACTGCCC
GATCCTAAGCCCTCTGGGATTGACCGCacc
Run BLAST on NCBI

transcript from alignment at sc0000001:1134303..1134532

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000320 ID=TCONS_00000320|Name=TCONS_00000320|organism=Clytia hemisphaerica|type=transcript|length=230bp|location=Sequence derived from alignment at sc0000001:1134303..1134532 (Clytia hemisphaerica)
ggtGCGGTCAATCCCAGAGGGCTTAGGATCGGGCAGTGACTTTAGGCGCC
ACCGAGCCATCACGACTGACCAAGGTCGCTAGCGTTCTGACGAGAGAAAT
TCTGGATAACCAATCCCGAACGGACCACGGTTTAAGATTGCTAATTCTAT
TCTATTGCTTGAAACACTTTTAATATGTATTCTGCTTGTGGTTTAAAGTC
TGAAGGGAAATACTGTTATTTTATCGCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000194XLOC_000194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000320-exon-sc0000001-1491911889:1134303..1134532TCONS_00000320-exon-sc0000001-1491911889:1134303..1134532Clytia hemisphaericaexon
TCONS_00000320-exon-sc0000001-1510915933:1134303..1134532TCONS_00000320-exon-sc0000001-1510915933:1134303..1134532Clytia hemisphaericaexon
TCONS_00000320-exon-sc0000001-1575043694:1134303..1134532TCONS_00000320-exon-sc0000001-1575043694:1134303..1134532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1134303..1134532 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.42443	27.0144	47.5296	5.08533	0	0	5.35066	2.11039	0.702485	5.10676	8.99669	0.643655	9.51516	0.812728	12.3511	2.34992	1.02125	0	0	0	3.40218	5.0606	11.5867	4.63713	3.5171	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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