TCONS_00000318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000318
Unique NameTCONS_00000318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000318 ID=TCONS_00000318|Name=TCONS_00000318|organism=Clytia hemisphaerica|type=transcript|length=304bp
CACACATGGACTTGTATAGTAGTATATTTCATTCAAGTTGAGATCATAAT
TTTAATGTTTAAACCCAATTTTGAGCAAGAATTTTAGAATTTCTGCCTCT
GTTCTTTTAATCAGTATGTAGTCCTAAATAATTCGGGGCATCCTGGAGAC
CATATATTtgattttggtttgatttttatccgaaattgtatttaaaaact
aatattttttcaactataaaaagatattgattttttatattatttttgta
aaagaatGTGACATATAATGTTTGTGATAATgtatttgtataaaaataat
tatt
Run BLAST on NCBI

transcript from alignment at sc0000001:1080752..1081055

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000318 ID=TCONS_00000318|Name=TCONS_00000318|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0000001:1080752..1081055 (Clytia hemisphaerica)
aataattatttttatacaaatacATTATCACAAACATTATATGTCACatt
cttttacaaaaataatataaaaaatcaatatctttttatagttgaaaaaa
tattagtttttaaatacaatttcggataaaaatcaaaccaaaatcaAATA
TATGGTCTCCAGGATGCCCCGAATTATTTAGGACTACATACTGATTAAAA
GAACAGAGGCAGAAATTCTAAAATTCTTGCTCAAAATTGGGTTTAAACAT
TAAAATTATGATCTCAACTTGAATGAAATATACTACTATACAAGTCCATG
TGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000192XLOC_000192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000318-exon-sc0000001-1491911889:1080752..1081055TCONS_00000318-exon-sc0000001-1491911889:1080752..1081055Clytia hemisphaericaexon
TCONS_00000318-exon-sc0000001-1510915933:1080752..1081055TCONS_00000318-exon-sc0000001-1510915933:1080752..1081055Clytia hemisphaericaexon
TCONS_00000318-exon-sc0000001-1575043694:1080752..1081055TCONS_00000318-exon-sc0000001-1575043694:1080752..1081055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1080752..1081055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.746241	0.727703	0	0	2.51587	3.18092	1.91882	2.69457	2.20095	4.28408	2.26813	2.23647	0.248151	1.03083	0.21187	0.227369	0	0.574187	2.77645	0.830101	1.08226	3.16734	0.427813	0.388944	0.801206	0	0	0.546017	0.828269	0.421938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top