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TCONS_00000317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000317
Unique NameTCONS_00000317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000317 ID=TCONS_00000317|Name=TCONS_00000317|organism=Clytia hemisphaerica|type=transcript|length=895bp
GTGGTTTTTGGGCGTGGAGTGGAAAAAGCGAACTCGTCTTGTCCTCGACT
GTTCCCGTTAGTTGATGTAAATTCAGGATGAAATTCGATATTCTCAAACT
TCTTGTTAAAGTCAAGGCTATTATCTATGTCTTCCGATTCTATTGACTTC
TCTGTATCGTCCGACGTTGACTTAATTCTATCTTTCCTGTCCCTCAGCAT
GTTCTTTAAAGCAATTGAATCTAGTTCATCATCATCCTCCTCATTGCTAC
GGAAACCTGCTTTGTGATTGGTCATTTCAATGGGCTCAAATAAATCGTCA
TTGTCACCAGTCCTCTCTGGTAGCTGCCCTAAGTCGCTCTTATTCTCTTT
GTCTGGTGTTAGGGCAGCAGAGTCGACAGCCGTTTCCGGCATTTTGTGGT
GATGTCTCGATAGAGGGGCTTCTGTCGTGGATTGGTCCTCAGTGTCTAGT
TTCCCAAAAGCTGTTTCAAGATTCGAATCAAAATGTGTCGTCAACCTTCT
ACTCGGCTTGAAGCCAAGGTCCGGTAATAACATTTGTCGGAGTGTATATC
TTGGTTTAGTTGTCGGTCGGAACAAATCATAATCGGGAGTCGTGGGCACA
CTTTCTAAAACACCAGCATTGTCGCCGTTCAAAGTTTTCTTTAGTGAGTG
TGTCACTTCAACTTCTGTTTCGTCATCGTTAGCCTCGTTCCTATCCTCCA
TATTTCCAAGCTTCGAGGCTAGATTTGAGGCTAAATTCTTAGGTGTTGTG
TTTAGTTCGTGTAACGGTATAGGAGTTGGGTATGTCACAGTATCGTGAAA
TTGCCGCTGTGTAGTACTGATGTGGTTTTTCCTAAGTGCGCTATCGACCA
TTTTTTGTATTCTCTGATCtaaattttctttcgtttccTTTTGAA
Run BLAST on NCBI

protein sequence of TCONS_00000317-protein

>TCONS_00000317-protein ID=TCONS_00000317-protein|Name=TCONS_00000317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
QKETKENLDQRIQKMVDSALRKNHISTTQRQFHDTVTYPTPIPLHELNTT
PKNLASNLASKLGNMEDRNEANDDETEVEVTHSLKKTLNGDNAGVLESVP
TTPDYDLFRPTTKPRYTLRQMLLPDLGFKPSRRLTTHFDSNLETAFGKLD
TEDQSTTEAPLSRHHHKMPETAVDSAALTPDKENKSDLGQLPERTGDNDD
LFEPIEMTNHKAGFRSNEEDDDELDSIALKNMLRDRKDRIKSTSDDTEKS
IESEDIDNSLDFNKKFENIEFHPEFTSTNGNSRGQDEFAFSTPRPKT
Run BLAST on NCBI

transcript from alignment at sc0000001:1054013..1054907

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000317 ID=TCONS_00000317|Name=TCONS_00000317|organism=Clytia hemisphaerica|type=transcript|length=895bp|location=Sequence derived from alignment at sc0000001:1054013..1054907 (Clytia hemisphaerica)
TTCAAAAggaaacgaaagaaaatttaGATCAGAGAATACAAAAAATGGTC GATAGCGCACTTAGGAAAAACCACATCAGTACTACACAGCGGCAATTTCA CGATACTGTGACATACCCAACTCCTATACCGTTACACGAACTAAACACAA CACCTAAGAATTTAGCCTCAAATCTAGCCTCGAAGCTTGGAAATATGGAG GATAGGAACGAGGCTAACGATGACGAAACAGAAGTTGAAGTGACACACTC ACTAAAGAAAACTTTGAACGGCGACAATGCTGGTGTTTTAGAAAGTGTGC CCACGACTCCCGATTATGATTTGTTCCGACCGACAACTAAACCAAGATAT ACACTCCGACAAATGTTATTACCGGACCTTGGCTTCAAGCCGAGTAGAAG GTTGACGACACATTTTGATTCGAATCTTGAAACAGCTTTTGGGAAACTAG ACACTGAGGACCAATCCACGACAGAAGCCCCTCTATCGAGACATCACCAC AAAATGCCGGAAACGGCTGTCGACTCTGCTGCCCTAACACCAGACAAAGA GAATAAGAGCGACTTAGGGCAGCTACCAGAGAGGACTGGTGACAATGACG ATTTATTTGAGCCCATTGAAATGACCAATCACAAAGCAGGTTTCCGTAGC AATGAGGAGGATGATGATGAACTAGATTCAATTGCTTTAAAGAACATGCT GAGGGACAGGAAAGATAGAATTAAGTCAACGTCGGACGATACAGAGAAGT CAATAGAATCGGAAGACATAGATAATAGCCTTGACTTTAACAAGAAGTTT GAGAATATCGAATTTCATCCTGAATTTACATCAACTAACGGGAACAGTCG AGGACAAGACGAGTTCGCTTTTTCCACTCCACGCCCAAAAACCAC

Coding sequence (CDS) from alignment at sc0000001:1054013..1054907

>TCONS_00000317 ID=TCONS_00000317|Name=TCONS_00000317|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0000001:1054013..1054907 (Clytia hemisphaerica)
CAAAAggaaacgaaagaaaatttaGATCAGAGAATACAAAAAATGGTCGA
TAGCGCACTTAGGAAAAACCACATCAGTACTACACAGCGGCAATTTCACG
ATACTGTGACATACCCAACTCCTATACCGTTACACGAACTAAACACAACA
CCTAAGAATTTAGCCTCAAATCTAGCCTCGAAGCTTGGAAATATGGAGGA
TAGGAACGAGGCTAACGATGACGAAACAGAAGTTGAAGTGACACACTCAC
TAAAGAAAACTTTGAACGGCGACAATGCTGGTGTTTTAGAAAGTGTGCCC
ACGACTCCCGATTATGATTTGTTCCGACCGACAACTAAACCAAGATATAC
ACTCCGACAAATGTTATTACCGGACCTTGGCTTCAAGCCGAGTAGAAGGT
TGACGACACATTTTGATTCGAATCTTGAAACAGCTTTTGGGAAACTAGAC
ACTGAGGACCAATCCACGACAGAAGCCCCTCTATCGAGACATCACCACAA
AATGCCGGAAACGGCTGTCGACTCTGCTGCCCTAACACCAGACAAAGAGA
ATAAGAGCGACTTAGGGCAGCTACCAGAGAGGACTGGTGACAATGACGAT
TTATTTGAGCCCATTGAAATGACCAATCACAAAGCAGGTTTCCGTAGCAA
TGAGGAGGATGATGATGAACTAGATTCAATTGCTTTAAAGAACATGCTGA
GGGACAGGAAAGATAGAATTAAGTCAACGTCGGACGATACAGAGAAGTCA
ATAGAATCGGAAGACATAGATAATAGCCTTGACTTTAACAAGAAGTTTGA
GAATATCGAATTTCATCCTGAATTTACATCAACTAACGGGAACAGTCGAG
GACAAGACGAGTTCGCTTTTTCCACTCCACGCCCAAAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000191XLOC_000191Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000317-proteinTCONS_00000317-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000317-exon-sc0000001-1491911889:1054013..1054907TCONS_00000317-exon-sc0000001-1491911889:1054013..1054907Clytia hemisphaericaexon
TCONS_00000317-exon-sc0000001-1510915933:1054013..1054907TCONS_00000317-exon-sc0000001-1510915933:1054013..1054907Clytia hemisphaericaexon
TCONS_00000317-exon-sc0000001-1575043694:1054013..1054907TCONS_00000317-exon-sc0000001-1575043694:1054013..1054907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1054013..1054907 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.139486 0.0551119 0.465431 1.24495 0 0.485836 0.157188 0.137772 0.859881 2.07175 0.381765 1.76483 1.04824 1.27337 0 0 1.30007 0.951194 0.177892 0.70083 1.94341 2.72556 0.212742 0.151363 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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