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TCONS_00000315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000315
Unique NameTCONS_00000315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000315 ID=TCONS_00000315|Name=TCONS_00000315|organism=Clytia hemisphaerica|type=transcript|length=1298bp
ATGATACTCTTCTGTGTCACAATAACCTGATTTACACGTCACAGTGTAAC
AATAGCTTTGAATCATAAATGCTAAATCACATCCATGTTCGCGACAACAG
ACTTCAATGCATTGATCATCAGTATCCATTACTCCGTGACGCTTAAAATT
CCCGAGAGGCAAACCCCCTGATAATGTTGTATCCTCAATGAAAGTTGCTT
CCAAACACTTTGAATTTGCTGTCGAATCAGTTGCTTTAACTGGGTGTTGT
AAAACAGCTTTTAAATCTTCATTTGTGGTGTCTTTCAGTGACTTCGCAGG
TTTTCGGAACCTGATGATTTTAGTGTCATACTTATTACCCTCGACTTTTT
GTGTTTCGCAGCTCTCCTTAGAATGACATTCAACTGCAAAACATTTGCCT
TTGGTAATGAAAACGAGGTCACATTTATCATTATGGCAACAAGCTTCAGC
GCAACCATTTTCATCAGAAGATGAATCAATGTCGGTGTACGTACCAGCTT
CCAGTCCATTCTTCAAAATTGAATCGTGTTCAATGTTTACTACCTTACAT
TTACCATCATCCGCTTTCTCTCGATTTGCTGATGCTTCAATGGTTGCCAA
TTCTACCGAAGCTTTGTCTGCCATATTTGATTTGATGTCACCAATCTCCT
TGCGTAAGCTTGTCTGCATTTTATCCATTGTTGAAAGAATGTCAGTTTTA
AATTCATCTGATTTTGTATTATCCTTTGAAGGTTCTTTACTTACTTTCGA
GCTCAAATCTTTTAACCCATTTTCCAATTTCTTCATCTCTTCTTTAGTCT
GCAGTTTATCTTTATTTCCCTCATTCTGGTCCTGATTTTTGCTCTTCAGT
TGTTCTTTAATATCAGCAATGCTATCTCGAAGGTCGTCAACCTTCTCATC
TCGGGACGTAAGTTTCTGGACCAGATTTTCAAGTCTTTCGATGAATTGAC
TGTTAACGTCACTTCCTTGAGCTTGAGTTGGTCGCAACTTATTTCTCAAC
ATTTGtctttttaaatctttgatTTCATTCATCACTGCTTGATCTGCAAT
CTTGGATTTGACGTCATTCAGTTCACTCTCTAACCTATCGTTAGATCTAC
TCTCCACCATTTGTCGCGTGATCTTTTTCAACATTCCTTCTAATcgtctt
tcattttcattgtttttataacgTTGGAGTTTCTCTTCCAGCTCTCCAAT
CCTTGGATCTCTACCACGATTTCTTGACCAATCAGGGTCGAATTCAGTGT
AATCATTATAAAAATCGTCGTTTTCCTCGGCAGGAAAGCCATGTGAGT
Run BLAST on NCBI

protein sequence of TCONS_00000315-protein

>TCONS_00000315-protein ID=TCONS_00000315-protein|Name=TCONS_00000315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
SHGFPAEENDDFYNDYTEFDPDWSRNRGRDPRIGELEEKLQRYKNNENER
RLEGMLKKITRQMVESRSNDRLESELNDVKSKIADQAVMNEIKDLKRQML
RNKLRPTQAQGSDVNSQFIERLENLVQKLTSRDEKVDDLRDSIADIKEQL
KSKNQDQNEGNKDKLQTKEEMKKLENGLKDLSSKVSKEPSKDNTKSDEFK
TDILSTMDKMQTSLRKEIGDIKSNMADKASVELATIEASANREKADDGKC
KVVNIEHDSILKNGLEAGTYTDIDSSSDENGCAEACCHNDKCDLVFITKG
KCFAVECHSKESCETQKVEGNKYDTKIIRFRKPAKSLKDTTNEDLKAVLQ
HPVKATDSTANSKCLEATFIEDTTLSGGLPLGNFKRHGVMDTDDQCIEVC
CREHGCDLAFMIQSYCYTVTCKSGYCDTEEYH
Run BLAST on NCBI

transcript from alignment at sc0000001:1043404..1044701

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000315 ID=TCONS_00000315|Name=TCONS_00000315|organism=Clytia hemisphaerica|type=transcript|length=1298bp|location=Sequence derived from alignment at sc0000001:1043404..1044701 (Clytia hemisphaerica)
ACTCACATGGCTTTCCTGCCGAGGAAAACGACGATTTTTATAATGATTAC ACTGAATTCGACCCTGATTGGTCAAGAAATCGTGGTAGAGATCCAAGGAT TGGAGAGCTGGAAGAGAAACTCCAAcgttataaaaacaatgaaaatgaaa gacgATTAGAAGGAATGTTGAAAAAGATCACGCGACAAATGGTGGAGAGT AGATCTAACGATAGGTTAGAGAGTGAACTGAATGACGTCAAATCCAAGAT TGCAGATCAAGCAGTGATGAATGAAatcaaagatttaaaaagaCAAATGT TGAGAAATAAGTTGCGACCAACTCAAGCTCAAGGAAGTGACGTTAACAGT CAATTCATCGAAAGACTTGAAAATCTGGTCCAGAAACTTACGTCCCGAGA TGAGAAGGTTGACGACCTTCGAGATAGCATTGCTGATATTAAAGAACAAC TGAAGAGCAAAAATCAGGACCAGAATGAGGGAAATAAAGATAAACTGCAG ACTAAAGAAGAGATGAAGAAATTGGAAAATGGGTTAAAAGATTTGAGCTC GAAAGTAAGTAAAGAACCTTCAAAGGATAATACAAAATCAGATGAATTTA AAACTGACATTCTTTCAACAATGGATAAAATGCAGACAAGCTTACGCAAG GAGATTGGTGACATCAAATCAAATATGGCAGACAAAGCTTCGGTAGAATT GGCAACCATTGAAGCATCAGCAAATCGAGAGAAAGCGGATGATGGTAAAT GTAAGGTAGTAAACATTGAACACGATTCAATTTTGAAGAATGGACTGGAA GCTGGTACGTACACCGACATTGATTCATCTTCTGATGAAAATGGTTGCGC TGAAGCTTGTTGCCATAATGATAAATGTGACCTCGTTTTCATTACCAAAG GCAAATGTTTTGCAGTTGAATGTCATTCTAAGGAGAGCTGCGAAACACAA AAAGTCGAGGGTAATAAGTATGACACTAAAATCATCAGGTTCCGAAAACC TGCGAAGTCACTGAAAGACACCACAAATGAAGATTTAAAAGCTGTTTTAC AACACCCAGTTAAAGCAACTGATTCGACAGCAAATTCAAAGTGTTTGGAA GCAACTTTCATTGAGGATACAACATTATCAGGGGGTTTGCCTCTCGGGAA TTTTAAGCGTCACGGAGTAATGGATACTGATGATCAATGCATTGAAGTCT GTTGTCGCGAACATGGATGTGATTTAGCATTTATGATTCAAAGCTATTGT TACACTGTGACGTGTAAATCAGGTTATTGTGACACAGAAGAGTATCAT

Coding sequence (CDS) from alignment at sc0000001:1043404..1044701

>TCONS_00000315 ID=TCONS_00000315|Name=TCONS_00000315|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000001:1043404..1044701 (Clytia hemisphaerica)
TCACATGGCTTTCCTGCCGAGGAAAACGACGATTTTTATAATGATTACAC
TGAATTCGACCCTGATTGGTCAAGAAATCGTGGTAGAGATCCAAGGATTG
GAGAGCTGGAAGAGAAACTCCAAcgttataaaaacaatgaaaatgaaaga
cgATTAGAAGGAATGTTGAAAAAGATCACGCGACAAATGGTGGAGAGTAG
ATCTAACGATAGGTTAGAGAGTGAACTGAATGACGTCAAATCCAAGATTG
CAGATCAAGCAGTGATGAATGAAatcaaagatttaaaaagaCAAATGTTG
AGAAATAAGTTGCGACCAACTCAAGCTCAAGGAAGTGACGTTAACAGTCA
ATTCATCGAAAGACTTGAAAATCTGGTCCAGAAACTTACGTCCCGAGATG
AGAAGGTTGACGACCTTCGAGATAGCATTGCTGATATTAAAGAACAACTG
AAGAGCAAAAATCAGGACCAGAATGAGGGAAATAAAGATAAACTGCAGAC
TAAAGAAGAGATGAAGAAATTGGAAAATGGGTTAAAAGATTTGAGCTCGA
AAGTAAGTAAAGAACCTTCAAAGGATAATACAAAATCAGATGAATTTAAA
ACTGACATTCTTTCAACAATGGATAAAATGCAGACAAGCTTACGCAAGGA
GATTGGTGACATCAAATCAAATATGGCAGACAAAGCTTCGGTAGAATTGG
CAACCATTGAAGCATCAGCAAATCGAGAGAAAGCGGATGATGGTAAATGT
AAGGTAGTAAACATTGAACACGATTCAATTTTGAAGAATGGACTGGAAGC
TGGTACGTACACCGACATTGATTCATCTTCTGATGAAAATGGTTGCGCTG
AAGCTTGTTGCCATAATGATAAATGTGACCTCGTTTTCATTACCAAAGGC
AAATGTTTTGCAGTTGAATGTCATTCTAAGGAGAGCTGCGAAACACAAAA
AGTCGAGGGTAATAAGTATGACACTAAAATCATCAGGTTCCGAAAACCTG
CGAAGTCACTGAAAGACACCACAAATGAAGATTTAAAAGCTGTTTTACAA
CACCCAGTTAAAGCAACTGATTCGACAGCAAATTCAAAGTGTTTGGAAGC
AACTTTCATTGAGGATACAACATTATCAGGGGGTTTGCCTCTCGGGAATT
TTAAGCGTCACGGAGTAATGGATACTGATGATCAATGCATTGAAGTCTGT
TGTCGCGAACATGGATGTGATTTAGCATTTATGATTCAAAGCTATTGTTA
CACTGTGACGTGTAAATCAGGTTATTGTGACACAGAAGAGTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000189XLOC_000189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000315-exon-sc0000001-1491911889:1043404..1044701TCONS_00000315-exon-sc0000001-1491911889:1043404..1044701Clytia hemisphaericaexon
TCONS_00000315-exon-sc0000001-1510915933:1043404..1044701TCONS_00000315-exon-sc0000001-1510915933:1043404..1044701Clytia hemisphaericaexon
TCONS_00000315-exon-sc0000001-1575043694:1043404..1044701TCONS_00000315-exon-sc0000001-1575043694:1043404..1044701Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000315-proteinTCONS_00000315-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1043404..1044701 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0439336 0.0347169 0.125654 0.705812 0.109812 0.0680102 0.264049 0.0650909 0.281668 0.247513 0.147992 0.555864 0.244564 0.401072 0 0 0.440979 0.230458 0.112061 0.203759 1.04934 1.96666 0 0.0476744 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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