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TCONS_00000308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000308
Unique NameTCONS_00000308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000308 ID=TCONS_00000308|Name=TCONS_00000308|organism=Clytia hemisphaerica|type=transcript|length=1314bp
GTTCTTTTTTAGACTCAATGTCACTGATTGGCTGGGTTGGTACCTTCTTT
GTTTTAATTCGTTCAATATGATTATCTTCCTCTTGATTGGTGGGCTCTAA
CAATTGATCCATGACGTCATCTGGCTGTGTTTTCATTGGCTCTTCAAAGA
TTTGATGAAGGATTTCCTGGTCGTTGATTGGCTCGTTTTCTGAATCTtta
aatttgattggctgtctGTTGCctattgttttgattctttgGACAGCTTC
TTCAATTGGAGTACCATGCTCTTTGATCCAGTCAGTAATGCCATGTGCTA
TTTGTCGGTAGCGATTATCCTGGTTATCACGGTTCACGTTCGTTTGTGAA
TCTTCAGACGGCCGTGCGGTTGTTGCAGTAGTTTGAGCAGACCGGTGCTC
AGGTGTAATAAAACCCACACTGTGGCCTTCTTCTCTTAAATTACGTAATG
CTTCAAGAATTTGATCTTCGGGATTTTTCTGTTCCGTTATTTCGTCTAAA
CCTGGTATATCAGCTATATGAAGCTTTGGTTTTTCCGTAGTAGAGCTTGT
TACAATCTGCTGGTCATGAGGTTCCTTTGTCTCTGGATCAAACCTGTTAC
CACTTTTACTGTCTGCCGAATTGATAGATTCTCTTGGAAACGAAACCTCT
GTTTCATTTCCTTTCACTGTTACAGAAAGCTCATCAACTGGTGTTTTTAC
GACAGCAGTTCTGATTGGttctttttgatcatgtgacaACTCTACTAGCT
CAACCATTGGTCGTTGGGATTGATTCCGCTTGTCAGCGTCAACGTCCTTG
AATCTGTTTGTGATCAAGTCTTTCGATTTCAACGATTCTGTCATTTTAGA
TGTTGGTGATTGAGTCTCCGTCATCATATCTTTGATAACTGATTTAAGCC
TCGCCAAGATATCTTTAGGATTGTGTTTTAGATCCTCTCTTGAGTCTTTT
TGCTCCAATGTTGGTGGTACTTCTGGATCTCCAGACTGCAGAACTCTATT
GGCTACTGTAGATTCTCCCGGTACAATTACACCTTTAGGCTTTGACATTG
CACCAACCTTTCCTTCCCGGGATACATTGAGATGCCTAATTTTTACAATA
ATGGGGACATCATCAAGAACCTTGGATAGAGGCTCCGTTTGGCATTTCAG
TGGATCTACACAATTCACCGTGTAACAGAATCCTTTGAAAAACAGCGCAT
GCGTGCAATTGTTAAGTGCACAACACTTCGTGACACATCCATCAATGTTG
TGCTCTGATAAAATGGTTGTGAAAACACCTGCATATAACCCACCTTTGAA
TCGATGGTTAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00000308-protein

>TCONS_00000308-protein ID=TCONS_00000308-protein|Name=TCONS_00000308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
LNHRFKGGLYAGVFTTILSEHNIDGCVTKCCALNNCTHALFFKGFCYTVN
CVDPLKCQTEPLSKVLDDVPIIVKIRHLNVSREGKVGAMSKPKGVIVPGE
STVANRVLQSGDPEVPPTLEQKDSREDLKHNPKDILARLKSVIKDMMTET
QSPTSKMTESLKSKDLITNRFKDVDADKRNQSQRPMVELVELSHDQKEPI
RTAVVKTPVDELSVTVKGNETEVSFPRESINSADSKSGNRFDPETKEPHD
QQIVTSSTTEKPKLHIADIPGLDEITEQKNPEDQILEALRNLREEGHSVG
FITPEHRSAQTTATTARPSEDSQTNVNRDNQDNRYRQIAHGITDWIKEHG
TPIEEAVQRIKTIGNRQPIKFKDSENEPINDQEILHQIFEEPMKTQPDDV
MDQLLEPTNQEEDNHIERIKTKKVPTQPISDIESKKE
Run BLAST on NCBI

transcript from alignment at sc0000001:1030914..1032227

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000308 ID=TCONS_00000308|Name=TCONS_00000308|organism=Clytia hemisphaerica|type=transcript|length=1314bp|location=Sequence derived from alignment at sc0000001:1030914..1032227 (Clytia hemisphaerica)
CTCTTAACCATCGATTCAAAGGTGGGTTATATGCAGGTGTTTTCACAACC ATTTTATCAGAGCACAACATTGATGGATGTGTCACGAAGTGTTGTGCACT TAACAATTGCACGCATGCGCTGTTTTTCAAAGGATTCTGTTACACGGTGA ATTGTGTAGATCCACTGAAATGCCAAACGGAGCCTCTATCCAAGGTTCTT GATGATGTCCCCATTATTGTAAAAATTAGGCATCTCAATGTATCCCGGGA AGGAAAGGTTGGTGCAATGTCAAAGCCTAAAGGTGTAATTGTACCGGGAG AATCTACAGTAGCCAATAGAGTTCTGCAGTCTGGAGATCCAGAAGTACCA CCAACATTGGAGCAAAAAGACTCAAGAGAGGATCTAAAACACAATCCTAA AGATATCTTGGCGAGGCTTAAATCAGTTATCAAAGATATGATGACGGAGA CTCAATCACCAACATCTAAAATGACAGAATCGTTGAAATCGAAAGACTTG ATCACAAACAGATTCAAGGACGTTGACGCTGACAAGCGGAATCAATCCCA ACGACCAATGGTTGAGCTAGTAGAGTtgtcacatgatcaaaaagaaCCAA TCAGAACTGCTGTCGTAAAAACACCAGTTGATGAGCTTTCTGTAACAGTG AAAGGAAATGAAACAGAGGTTTCGTTTCCAAGAGAATCTATCAATTCGGC AGACAGTAAAAGTGGTAACAGGTTTGATCCAGAGACAAAGGAACCTCATG ACCAGCAGATTGTAACAAGCTCTACTACGGAAAAACCAAAGCTTCATATA GCTGATATACCAGGTTTAGACGAAATAACGGAACAGAAAAATCCCGAAGA TCAAATTCTTGAAGCATTACGTAATTTAAGAGAAGAAGGCCACAGTGTGG GTTTTATTACACCTGAGCACCGGTCTGCTCAAACTACTGCAACAACCGCA CGGCCGTCTGAAGATTCACAAACGAACGTGAACCGTGATAACCAGGATAA TCGCTACCGACAAATAGCACATGGCATTACTGACTGGATCAAAGAGCATG GTACTCCAATTGAAGAAGCTGTCcaaagaatcaaaacaatagGCAACaga cagccaatcaaatttaaAGATTCAGAAAACGAGCCAATCAACGACCAGGA AATCCTTCATCAAATCTTTGAAGAGCCAATGAAAACACAGCCAGATGACG TCATGGATCAATTGTTAGAGCCCACCAATCAAGAGGAAGATAATCATATT GAACGAATTAAAACAAAGAAGGTACCAACCCAGCCAATCAGTGACATTGA GTCTAAAAAAGAAC

Coding sequence (CDS) from alignment at sc0000001:1030914..1032227

>TCONS_00000308 ID=TCONS_00000308|Name=TCONS_00000308|organism=Clytia hemisphaerica|type=CDS|length=1311bp|location=Sequence derived from alignment at sc0000001:1030914..1032227 (Clytia hemisphaerica)
CTTAACCATCGATTCAAAGGTGGGTTATATGCAGGTGTTTTCACAACCAT
TTTATCAGAGCACAACATTGATGGATGTGTCACGAAGTGTTGTGCACTTA
ACAATTGCACGCATGCGCTGTTTTTCAAAGGATTCTGTTACACGGTGAAT
TGTGTAGATCCACTGAAATGCCAAACGGAGCCTCTATCCAAGGTTCTTGA
TGATGTCCCCATTATTGTAAAAATTAGGCATCTCAATGTATCCCGGGAAG
GAAAGGTTGGTGCAATGTCAAAGCCTAAAGGTGTAATTGTACCGGGAGAA
TCTACAGTAGCCAATAGAGTTCTGCAGTCTGGAGATCCAGAAGTACCACC
AACATTGGAGCAAAAAGACTCAAGAGAGGATCTAAAACACAATCCTAAAG
ATATCTTGGCGAGGCTTAAATCAGTTATCAAAGATATGATGACGGAGACT
CAATCACCAACATCTAAAATGACAGAATCGTTGAAATCGAAAGACTTGAT
CACAAACAGATTCAAGGACGTTGACGCTGACAAGCGGAATCAATCCCAAC
GACCAATGGTTGAGCTAGTAGAGTtgtcacatgatcaaaaagaaCCAATC
AGAACTGCTGTCGTAAAAACACCAGTTGATGAGCTTTCTGTAACAGTGAA
AGGAAATGAAACAGAGGTTTCGTTTCCAAGAGAATCTATCAATTCGGCAG
ACAGTAAAAGTGGTAACAGGTTTGATCCAGAGACAAAGGAACCTCATGAC
CAGCAGATTGTAACAAGCTCTACTACGGAAAAACCAAAGCTTCATATAGC
TGATATACCAGGTTTAGACGAAATAACGGAACAGAAAAATCCCGAAGATC
AAATTCTTGAAGCATTACGTAATTTAAGAGAAGAAGGCCACAGTGTGGGT
TTTATTACACCTGAGCACCGGTCTGCTCAAACTACTGCAACAACCGCACG
GCCGTCTGAAGATTCACAAACGAACGTGAACCGTGATAACCAGGATAATC
GCTACCGACAAATAGCACATGGCATTACTGACTGGATCAAAGAGCATGGT
ACTCCAATTGAAGAAGCTGTCcaaagaatcaaaacaatagGCAACagaca
gccaatcaaatttaaAGATTCAGAAAACGAGCCAATCAACGACCAGGAAA
TCCTTCATCAAATCTTTGAAGAGCCAATGAAAACACAGCCAGATGACGTC
ATGGATCAATTGTTAGAGCCCACCAATCAAGAGGAAGATAATCATATTGA
ACGAATTAAAACAAAGAAGGTACCAACCCAGCCAATCAGTGACATTGAGT
CTAAAAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000182XLOC_000182Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000308-proteinTCONS_00000308-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000308-exon-sc0000001-1491911889:1030914..1032227TCONS_00000308-exon-sc0000001-1491911889:1030914..1032227Clytia hemisphaericaexon
TCONS_00000308-exon-sc0000001-1510915933:1030914..1032227TCONS_00000308-exon-sc0000001-1510915933:1030914..1032227Clytia hemisphaericaexon
TCONS_00000308-exon-sc0000001-1575043694:1030914..1032227TCONS_00000308-exon-sc0000001-1575043694:1030914..1032227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1030914..1032227 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0321066 0 0 0.0355654 0.086595 0.0684285 0.041278 0.19322 0.0811667 0 0.0325282 0.0213828 0.106765 0 0.0546935 0.0978241 0.0241023 0.0494081 0.06826 0 0.0310424 0.0454242 0 0 0.379185 0.369179 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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