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TCONS_00000306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000306
Unique NameTCONS_00000306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000306 ID=TCONS_00000306|Name=TCONS_00000306|organism=Clytia hemisphaerica|type=transcript|length=770bp
TTGGTCTTGGTACTGTTGTTACCAGATAATTTGTTAATTGCCACTACTGA
TACCGGTCTTTTAATTGTACTTGATCCCATCGTTCCTTCGGTTTCCGTCT
TAATAGAGGATAATTTTTCAGGTAGAAATCTAGTTGATTTCGCATTGACA
TTGTCTGAAGGAGTTGCATTCGACTCTGGAGATTTTCCCGTGCTTATGCT
GTCTTTTCGAAGCGTATTTTTTGTCAATACAGATTTATTGATTGCATTTG
AATGTTTTTGGGATGTGTTAGCTCTGACATGAGGCGACCctcttttcgtt
ttttttgtttgtcgTGTCACCGATTGTTCTCGGTATTTCGAAGTCGTTTT
CGGCTTTGACGATCGATGAATTTTCGTCGGTACTTGTTCATAGTTTTGTG
GATGTTTTCTTAACATGTCTAACAAGAAAGCTGTATCTTCTGTGTCCTTC
AAACCTCTATAAACGAAAGCTAACCCATACTCGTGGCTTCTCCTCCGCTT
ATTCACTCGGCGGACCGCTTCGCACAACTTTCGATCAACACATCTTATCA
GGTGACATATACGTCGTGCAACCATGGCAACGTTGCATCCAGGTGTCGAG
CAACAATGTTTGACGCAACTCGAAGGGCGGAAGATATATTTACGCCCGAG
CAACTTCCCCACCCTAGGTCCACCCTTTAGAGCCATACCACTCAAGAGAC
GTCCATGTTGACAAAGTGAGACGCGATGGTATTCTATTTTGTGTTGTGTC
ATTTGTTTGGCTTTCTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00000306-protein

>TCONS_00000306-protein ID=TCONS_00000306-protein|Name=TCONS_00000306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
LKKAKQMTQHKIEYHRVSLCQHGRLLSGMALKGGPRVGKLLGRKYIFRPS
SCVKHCCSTPGCNVAMVARRICHLIRCVDRKLCEAVRRVNKRRRSHEYGL
AFVYRGLKDTEDTAFLLDMLRKHPQNYEQVPTKIHRSSKPKTTSKYREQS
VTRQTKKTKRGSPHVRANTSQKHSNAINKSVLTKNTLRKDSISTGKSPES
NATPSDNVNAKSTRFLPEKLSSIKTETEGTMGSSTIKRPVSVVAINKLSG
NNSTKT
Run BLAST on NCBI

transcript from alignment at sc0000001:1023140..1023909

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000306 ID=TCONS_00000306|Name=TCONS_00000306|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at sc0000001:1023140..1023909 (Clytia hemisphaerica)
CTCAAGAAAGCCAAACAAATGACACAACACAAAATAGAATACCATCGCGT CTCACTTTGTCAACATGGACGTCTCTTGAGTGGTATGGCTCTAAAGGGTG GACCTAGGGTGGGGAAGTTGCTCGGGCGTAAATATATCTTCCGCCCTTCG AGTTGCGTCAAACATTGTTGCTCGACACCTGGATGCAACGTTGCCATGGT TGCACGACGTATATGTCACCTGATAAGATGTGTTGATCGAAAGTTGTGCG AAGCGGTCCGCCGAGTGAATAAGCGGAGGAGAAGCCACGAGTATGGGTTA GCTTTCGTTTATAGAGGTTTGAAGGACACAGAAGATACAGCTTTCTTGTT AGACATGTTAAGAAAACATCCACAAAACTATGAACAAGTACCGACGAAAA TTCATCGATCGTCAAAGCCGAAAACGACTTCGAAATACCGAGAACAATCG GTGACAcgacaaacaaaaaaaacgaaaagagGGTCGCCTCATGTCAGAGC TAACACATCCCAAAAACATTCAAATGCAATCAATAAATCTGTATTGACAA AAAATACGCTTCGAAAAGACAGCATAAGCACGGGAAAATCTCCAGAGTCG AATGCAACTCCTTCAGACAATGTCAATGCGAAATCAACTAGATTTCTACC TGAAAAATTATCCTCTATTAAGACGGAAACCGAAGGAACGATGGGATCAA GTACAATTAAAAGACCGGTATCAGTAGTGGCAATTAACAAATTATCTGGT AACAACAGTACCAAGACCAA

Coding sequence (CDS) from alignment at sc0000001:1023140..1023909

>TCONS_00000306 ID=TCONS_00000306|Name=TCONS_00000306|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000001:1023140..1023909 (Clytia hemisphaerica)
CTCAAGAAAGCCAAACAAATGACACAACACAAAATAGAATACCATCGCGT
CTCACTTTGTCAACATGGACGTCTCTTGAGTGGTATGGCTCTAAAGGGTG
GACCTAGGGTGGGGAAGTTGCTCGGGCGTAAATATATCTTCCGCCCTTCG
AGTTGCGTCAAACATTGTTGCTCGACACCTGGATGCAACGTTGCCATGGT
TGCACGACGTATATGTCACCTGATAAGATGTGTTGATCGAAAGTTGTGCG
AAGCGGTCCGCCGAGTGAATAAGCGGAGGAGAAGCCACGAGTATGGGTTA
GCTTTCGTTTATAGAGGTTTGAAGGACACAGAAGATACAGCTTTCTTGTT
AGACATGTTAAGAAAACATCCACAAAACTATGAACAAGTACCGACGAAAA
TTCATCGATCGTCAAAGCCGAAAACGACTTCGAAATACCGAGAACAATCG
GTGACAcgacaaacaaaaaaaacgaaaagagGGTCGCCTCATGTCAGAGC
TAACACATCCCAAAAACATTCAAATGCAATCAATAAATCTGTATTGACAA
AAAATACGCTTCGAAAAGACAGCATAAGCACGGGAAAATCTCCAGAGTCG
AATGCAACTCCTTCAGACAATGTCAATGCGAAATCAACTAGATTTCTACC
TGAAAAATTATCCTCTATTAAGACGGAAACCGAAGGAACGATGGGATCAA
GTACAATTAAAAGACCGGTATCAGTAGTGGCAATTAACAAATTATCTGGT
AACAACAGTACCAAGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000180XLOC_000180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000306-exon-sc0000001-1491911889:1023140..1023909TCONS_00000306-exon-sc0000001-1491911889:1023140..1023909Clytia hemisphaericaexon
TCONS_00000306-exon-sc0000001-1510915933:1023140..1023909TCONS_00000306-exon-sc0000001-1510915933:1023140..1023909Clytia hemisphaericaexon
TCONS_00000306-exon-sc0000001-1575043694:1023140..1023909TCONS_00000306-exon-sc0000001-1575043694:1023140..1023909Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000306-proteinTCONS_00000306-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1023140..1023909 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.123338 0 0 0.170566 0.0673917 0.16261 0.152234 0 0.0660099 0.320354 0 0.0841181 0 0 0.0385368 0.0949483 0 0.268903 0.211041 0.122288 0.089472 0 0.0659221 0.271593 0.424183 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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