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TCONS_00000295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000295
Unique NameTCONS_00000295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length887

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000295 ID=TCONS_00000295|Name=TCONS_00000295|organism=Clytia hemisphaerica|type=transcript|length=887bp
CCTTAGTAGACTTTTCTTCATTTCAACCTTGGCATGtttttaagatgttc
ttaatttttgagcaAATCTTAAGCAAATCAAGAATATTTGACTATATATT
TCACAAGAATTAATTTTCGTGATTGACCCATTTGACTCCGATTTAACTAA
AATCAACCTTTGCGAAAAACAACACTTTTTATGCCTATCTTTCGAACTAG
GATGTTCAGCACTTTTCACAGGAACTTACACAAAACAATTTTACTGACCA
CTGTACATTTCATAAGTATTCTTCTCACCCAAGACAAGTATACATCGCAC
CCAAGTATACTTTTCACATTGTTCCTGTCACTACTATACGTGCCTTTTTA
CCCtgtttgtttacctttttttctacGTTGCCTGGAAAAGAAGGAGCACT
AACCATTGTGAACAACTTCAAGATAAGACAGATTAAGGCTACTTTAAtag
gatttaattttgcgagtcAAGACTTTCGCGTGAGTataatttcgcgaatg
acccTAAAAATGGatatattttaccaaaattgCATGGTTTTGATAAAATG
GtagtttcaaaaatttcgcgtggatttgaCGATTTGATTTCGCGAATCGA
CGATCCCACGCGATATCGCGAGacaaattttggcggaaagggCAAAAAAG
AAAGAGTTAAAGTATATTTTTAATGGTAAGAGTCTTTGTTTTGCATAATG
AAATGTTATACCATATACATACAAAATACCTAAAAAAATAGCTTCATACA
GTCTCTAGAAGTCAAACTATGATTTGTGAatcaataacaaaagaaaacat
aaaaatcatacttcaatGAAAGCAAACTTAAGCTTGGGGATAATCAATAT
TTATCCGGTTGATTATGTTGTCAAATGTTTGGTCTAG
Run BLAST on NCBI

transcript from alignment at sc0000001:745921..746807

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000295 ID=TCONS_00000295|Name=TCONS_00000295|organism=Clytia hemisphaerica|type=transcript|length=887bp|location=Sequence derived from alignment at sc0000001:745921..746807 (Clytia hemisphaerica)
CTAGACCAAACATTTGACAACATAATCAACCGGATAAATATTGATTATCC CCAAGCTTAAGTTTGCTTTCattgaagtatgatttttatgttttcttttg ttattgatTCACAAATCATAGTTTGACTTCTAGAGACTGTATGAAGCTAT TTTTTTAGGTATTTTGTATGTATATGGTATAACATTTCATTATGCAAAAC AAAGACTCTTACCATTAAAAATATACTTTAACTCTTTCTTTTTTGccctt tccgccaaaatttgtCTCGCGATATCGCGTGGGATCGTCGATTCGCGAAA TCAAATCGtcaaatccacgcgaaatttttgaaactaCCATTTTATCAAAA CCATGcaattttggtaaaatatatCCATTTTTAgggtcattcgcgaaatt atACTCACGCGAAAGTCTTgactcgcaaaattaaatcctaTTAAAGTAGC CTTAATCTGTCTTATCTTGAAGTTGTTCACAATGGTTAGTGCTCCTTCTT TTCCAGGCAACgtagaaaaaaaggtaaacaaacaGGGTAAAAAGGCACGT ATAGTAGTGACAGGAACAATGTGAAAAGTATACTTGGGTGCGATGTATAC TTGTCTTGGGTGAGAAGAATACTTATGAAATGTACAGTGGTCAGTAAAAT TGTTTTGTGTAAGTTCCTGTGAAAAGTGCTGAACATCCTAGTTCGAAAGA TAGGCATAAAAAGTGTTGTTTTTCGCAAAGGTTGATTTTAGTTAAATCGG AGTCAAATGGGTCAATCACGAAAATTAATTCTTGTGAAATATATAGTCAA ATATTCTTGATTTGCTTAAGATTtgctcaaaaattaagaacatcttaaaa aCATGCCAAGGTTGAAATGAAGAAAAGTCTACTAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000169XLOC_000169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000295-exon-sc0000001-1491911889:745921..746807TCONS_00000295-exon-sc0000001-1491911889:745921..746807Clytia hemisphaericaexon
TCONS_00000295-exon-sc0000001-1510915933:745921..746807TCONS_00000295-exon-sc0000001-1510915933:745921..746807Clytia hemisphaericaexon
TCONS_00000295-exon-sc0000001-1575043694:745921..746807TCONS_00000295-exon-sc0000001-1575043694:745921..746807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:745921..746807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0592474 0 0 0.111524 1.00912 0.629817 1.23466 0.546188 1.21933 0.627291 0.208806 0.0361413 0.207991 0.159433 0 0.0402625 0.667498 0.232829 0.0505928 0.0740321 0 0 0.0561812 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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