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TCONS_00000291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000291
Unique NameTCONS_00000291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000291 ID=TCONS_00000291|Name=TCONS_00000291|organism=Clytia hemisphaerica|type=transcript|length=1472bp
ATGAACATCACACGACCGTTGAATTGTGGATCCTTACTCAACATTATTGC
CCTTTGCTTGAGTATGTGTGTCTTTCCAGCGCCCGGACCACCCTTAATCA
AAAGTTTCGTATATTGGGCGTGATCTCCAATAAATACTGGTAATTGTTCT
TTTGAGTGAAATAAAATATTGTGGCTGGTACAAAGTGTGTCGATTGCATC
GCTGATATATTTGACCCAGTTGGTTGTTGTGATTGGTGCTATTTGGTCTT
TCTTCGAAATGTGTACAGCAAAAATGATCAAACGCAAAACCTTTATGAGA
TGCTCGACGGATGGTAGAAATGGTATCGGAACAGTTTGTTCAGGAAATCG
TTTGAATATCGATGATAACCATAATTCTATGTCAGTGTTTATGTCAATGT
AATGTTGAGTTTCGAAAGACAGGGTATTCTTCCCGACAGAAATCACTGGG
AAAAATGTCCAGTCGGGACCAAACTGATCACCTAATCTTTCTTGGAATAG
CGTGTGATATTTTTCGATTTGGTCAAAAgcggtgtcattgagttgtctcT
TTATTTCGATACCAATGACGAGTTTTCTTGGCCAAGAGAAAATGACCAGG
TCAAATTCTTGATGTttctttttgctgacgtcagttAAAAAACAAACCGA
TTGAAGGATAACTGTATCTTTTAATAAAGTCTCCTCTCTCATAGACAATA
ATTTATCGAAGAACATTTGTTCATAAGCCTCGCCACGATGTGATAACACC
aattcaaaaaaccataacaagTTTGAATCCGTGCATGGGTTTTGTTTAAT
CAGTTTCTCTATTCCAGGTTTTAGATTCTTTTTACCGTTCACATTTCTCA
AAGTTTGTAGATAATTTCGTAGAGTGGCTTCAAGCTCTGCTCCTGGTTTC
TTAGAAGCCAGCTCAGCTATGCAGCCTTTaatgaagatatttgtttcTAA
AATTGAAGGCGGTAAATTGACCTCTTTTCCATGCAATTCCTGGGCGACAA
GATATGACATTTTAACGTTTAGGATCCACTTGTCGAAATCAGCAGCATTT
ATTTCTTTAGCATCATCAGTTGATAATCCTTGTTGTTGGACGAAAGTTTT
TAACTGTTCTGTGAACCAATAATTGGGAAATTCATTCGATAAGTTAGCCA
ACGTTGTCAGAAATGTTTTTTCGAATTCGTAATCCAAAAGAGGAGCTGCA
GATTTACTTGTATATTGATTTGAACAGAACACTGGAGGTATGAATACACA
TTCGTGTTTTGTGTTATCAACGAGAGAAGAATCGCCATATTCTCTCTGAA
GTAAATAATCAGCTGCAGTTATTGGGTCGGTGAATATTTGGCCGTTGCCG
AGATTAAACTGTTTAGTTTGATGCTGTAAAGTTTTTCTAGAGTATCTAAG
AACTTGTTGGTGTAGTGATTTACCCAGAGTGCATTTCGATGGGTCGATCA
TTTTCGGTTTCATATCCATGAC
Run BLAST on NCBI

protein sequence of TCONS_00000291-protein

>TCONS_00000291-protein ID=TCONS_00000291-protein|Name=TCONS_00000291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=490bp
VMDMKPKMIDPSKCTLGKSLHQQVLRYSRKTLQHQTKQFNLGNGQIFTDP
ITAADYLLQREYGDSSLVDNTKHECVFIPPVFCSNQYTSKSAAPLLDYEF
EKTFLTTLANLSNEFPNYWFTEQLKTFVQQQGLSTDDAKEINAADFDKWI
LNVKMSYLVAQELHGKEVNLPPSILETNIFIKGCIAELASKKPGAELEAT
LRNYLQTLRNVNGKKNLKPGIEKLIKQNPCTDSNLLWFFELVLSHRGEAY
EQMFFDKLLSMREETLLKDTVILQSVCFLTDVSKKKHQEFDLVIFSWPRK
LVIGIEIKRQLNDTAFDQIEKYHTLFQERLGDQFGPDWTFFPVISVGKNT
LSFETQHYIDINTDIELWLSSIFKRFPEQTVPIPFLPSVEHLIKVLRLII
FAVHISKKDQIAPITTTNWVKYISDAIDTLCTSHNILFHSKEQLPVFIGD
HAQYTKLLIKGGPGAGKTHILKQRAIMLSKDPQFNGRVMF
Run BLAST on NCBI

transcript from alignment at sc0000001:658205..659676

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000291 ID=TCONS_00000291|Name=TCONS_00000291|organism=Clytia hemisphaerica|type=transcript|length=1472bp|location=Sequence derived from alignment at sc0000001:658205..659676 (Clytia hemisphaerica)
GTCATGGATATGAAACCGAAAATGATCGACCCATCGAAATGCACTCTGGG TAAATCACTACACCAACAAGTTCTTAGATACTCTAGAAAAACTTTACAGC ATCAAACTAAACAGTTTAATCTCGGCAACGGCCAAATATTCACCGACCCA ATAACTGCAGCTGATTATTTACTTCAGAGAGAATATGGCGATTCTTCTCT CGTTGATAACACAAAACACGAATGTGTATTCATACCTCCAGTGTTCTGTT CAAATCAATATACAAGTAAATCTGCAGCTCCTCTTTTGGATTACGAATTC GAAAAAACATTTCTGACAACGTTGGCTAACTTATCGAATGAATTTCCCAA TTATTGGTTCACAGAACAGTTAAAAACTTTCGTCCAACAACAAGGATTAT CAACTGATGATGCTAAAGAAATAAATGCTGCTGATTTCGACAAGTGGATC CTAAACGTTAAAATGTCATATCTTGTCGCCCAGGAATTGCATGGAAAAGA GGTCAATTTACCGCCTTCAATTTTAgaaacaaatatcttcattAAAGGCT GCATAGCTGAGCTGGCTTCTAAGAAACCAGGAGCAGAGCTTGAAGCCACT CTACGAAATTATCTACAAACTTTGAGAAATGTGAACGGTAAAAAGAATCT AAAACCTGGAATAGAGAAACTGATTAAACAAAACCCATGCACGGATTCAA ActtgttatggttttttgaattGGTGTTATCACATCGTGGCGAGGCTTAT GAACAAATGTTCTTCGATAAATTATTGTCTATGAGAGAGGAGACTTTATT AAAAGATACAGTTATCCTTCAATCGGTTTGTTTTTTaactgacgtcagca aaaagaaACATCAAGAATTTGACCTGGTCATTTTCTCTTGGCCAAGAAAA CTCGTCATTGGTATCGAAATAAAgagacaactcaatgacaccgcTTTTGA CCAAATCGAAAAATATCACACGCTATTCCAAGAAAGATTAGGTGATCAGT TTGGTCCCGACTGGACATTTTTCCCAGTGATTTCTGTCGGGAAGAATACC CTGTCTTTCGAAACTCAACATTACATTGACATAAACACTGACATAGAATT ATGGTTATCATCGATATTCAAACGATTTCCTGAACAAACTGTTCCGATAC CATTTCTACCATCCGTCGAGCATCTCATAAAGGTTTTGCGTTTGATCATT TTTGCTGTACACATTTCGAAGAAAGACCAAATAGCACCAATCACAACAAC CAACTGGGTCAAATATATCAGCGATGCAATCGACACACTTTGTACCAGCC ACAATATTTTATTTCACTCAAAAGAACAATTACCAGTATTTATTGGAGAT CACGCCCAATATACGAAACTTTTGATTAAGGGTGGTCCGGGCGCTGGAAA GACACACATACTCAAGCAAAGGGCAATAATGTTGAGTAAGGATCCACAAT TCAACGGTCGTGTGATGTTCAT

Coding sequence (CDS) from alignment at sc0000001:658205..659676

>TCONS_00000291 ID=TCONS_00000291|Name=TCONS_00000291|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at sc0000001:658205..659676 (Clytia hemisphaerica)
GTCATGGATATGAAACCGAAAATGATCGACCCATCGAAATGCACTCTGGG
TAAATCACTACACCAACAAGTTCTTAGATACTCTAGAAAAACTTTACAGC
ATCAAACTAAACAGTTTAATCTCGGCAACGGCCAAATATTCACCGACCCA
ATAACTGCAGCTGATTATTTACTTCAGAGAGAATATGGCGATTCTTCTCT
CGTTGATAACACAAAACACGAATGTGTATTCATACCTCCAGTGTTCTGTT
CAAATCAATATACAAGTAAATCTGCAGCTCCTCTTTTGGATTACGAATTC
GAAAAAACATTTCTGACAACGTTGGCTAACTTATCGAATGAATTTCCCAA
TTATTGGTTCACAGAACAGTTAAAAACTTTCGTCCAACAACAAGGATTAT
CAACTGATGATGCTAAAGAAATAAATGCTGCTGATTTCGACAAGTGGATC
CTAAACGTTAAAATGTCATATCTTGTCGCCCAGGAATTGCATGGAAAAGA
GGTCAATTTACCGCCTTCAATTTTAgaaacaaatatcttcattAAAGGCT
GCATAGCTGAGCTGGCTTCTAAGAAACCAGGAGCAGAGCTTGAAGCCACT
CTACGAAATTATCTACAAACTTTGAGAAATGTGAACGGTAAAAAGAATCT
AAAACCTGGAATAGAGAAACTGATTAAACAAAACCCATGCACGGATTCAA
ActtgttatggttttttgaattGGTGTTATCACATCGTGGCGAGGCTTAT
GAACAAATGTTCTTCGATAAATTATTGTCTATGAGAGAGGAGACTTTATT
AAAAGATACAGTTATCCTTCAATCGGTTTGTTTTTTaactgacgtcagca
aaaagaaACATCAAGAATTTGACCTGGTCATTTTCTCTTGGCCAAGAAAA
CTCGTCATTGGTATCGAAATAAAgagacaactcaatgacaccgcTTTTGA
CCAAATCGAAAAATATCACACGCTATTCCAAGAAAGATTAGGTGATCAGT
TTGGTCCCGACTGGACATTTTTCCCAGTGATTTCTGTCGGGAAGAATACC
CTGTCTTTCGAAACTCAACATTACATTGACATAAACACTGACATAGAATT
ATGGTTATCATCGATATTCAAACGATTTCCTGAACAAACTGTTCCGATAC
CATTTCTACCATCCGTCGAGCATCTCATAAAGGTTTTGCGTTTGATCATT
TTTGCTGTACACATTTCGAAGAAAGACCAAATAGCACCAATCACAACAAC
CAACTGGGTCAAATATATCAGCGATGCAATCGACACACTTTGTACCAGCC
ACAATATTTTATTTCACTCAAAAGAACAATTACCAGTATTTATTGGAGAT
CACGCCCAATATACGAAACTTTTGATTAAGGGTGGTCCGGGCGCTGGAAA
GACACACATACTCAAGCAAAGGGCAATAATGTTGAGTAAGGATCCACAAT
TCAACGGTCGTGTGATGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000166XLOC_000166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000291-exon-sc0000001-1491911889:658205..659676TCONS_00000291-exon-sc0000001-1491911889:658205..659676Clytia hemisphaericaexon
TCONS_00000291-exon-sc0000001-1510915933:658205..659676TCONS_00000291-exon-sc0000001-1510915933:658205..659676Clytia hemisphaericaexon
TCONS_00000291-exon-sc0000001-1575043694:658205..659676TCONS_00000291-exon-sc0000001-1575043694:658205..659676Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000291-proteinTCONS_00000291-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:658205..659676 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.99511 0.779068 0.388564 0.182904 0.398981 0.459462 1.92965 2.14443 0.85536 1.01106 0.698627 0.865312 2.19014 1.83956 1.98942 3.60471 1.17777 0.61384 2.38222 1.97117 0.815092 1.20478 1.78368 2.09738 0.384146 0.440032 2.50596 1.65363 2.37736 2.71895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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