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TCONS_00000286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000286
Unique NameTCONS_00000286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length889

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000286 ID=TCONS_00000286|Name=TCONS_00000286|organism=Clytia hemisphaerica|type=transcript|length=889bp
ttttttaaaaaaacccccccccccccccccatttggAGACGTTTCAATAC
TGCAATAgtcaaaataaaatggaaaagGGGGAATTTGGGGTAAAAGAGAA
AGCTAAAACTAGAGCTCTGGAAAGAAGGATGAATTTCAATACTTTTGAAC
GAAAAGGATTTTAAAATCAACCTATTCTaggcagaaattaaaaaaagaat
taggAATCAAGCAGCCTGAAGGAGATATTTTACCAAACTTGAAACGATGT
TAATTTGTAAGTGCTCAAATCTTTTTAAACTGAGCGAATTtatacttttg
ttttgtttttgaatttgacgAATTAGATGTATATTTATTTTCACCCTTTT
GACTTAACAcatgattgatttaaaaatatcgttatttttttatttaaaaa
tttttcttggtTTCTAATCTAAAAGAACTCTTGAACTTGACAAGTACCTG
TGACTTTTAAGTATCTTTCTGATATcgttatttaattttttcccaTCGAC
TGAGACAGAACAAGTCATTTAGAGATGTTTCCCAGCCTGTGTGGACAGAC
CTGAGAACCTGTGAAGATTATTTACATTTTAACACCCTGTAACTTAGGCC
ATCCATTTCTTTAAGATTAGAAATCAAGATATCTATGtcagtatttcaaa
atattttctttcagctTCTACTTATTAGGAAATGTGTGTGTTTATATATA
ACGAatcattaatataaattaaaaatcttattgttcgatatttttatgta
atatttcttttctgtTACCTGTTTTTTGTACGCGttagaatttttcattt
tttacaaaaaaaaagtattaaaCAAAATATACTTGGTATTAAAAATAAGA
TCGTTCAGTTTTGTGAATTATTCTTTACTGTGATACAAC
Run BLAST on NCBI

transcript from alignment at sc0000001:470309..471197

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000286 ID=TCONS_00000286|Name=TCONS_00000286|organism=Clytia hemisphaerica|type=transcript|length=889bp|location=Sequence derived from alignment at sc0000001:470309..471197 (Clytia hemisphaerica)
GTTGTATCACAGTAAAGAATAATTCACAAAACTGAACGATCTTATTTTTA ATACCAAGTATATTTTGtttaatactttttttttgtaaaaaatgaaaaat tctaaCGCGTACAAAAAACAGGTAacagaaaagaaatattacataaaaat atcgaacaataagatttttaatttatattaatgatTCGTTATATATAAAC ACACACATTTCCTAATAAGTAGAagctgaaagaaaatattttgaaatact gaCATAGATATCTTGATTTCTAATCTTAAAGAAATGGATGGCCTAAGTTA CAGGGTGTTAAAATGTAAATAATCTTCACAGGTTCTCAGGTCTGTCCACA CAGGCTGGGAAACATCTCTAAATGACTTGTTCTGTCTCAGTCGAtgggaa aaaattaaataacgATATCAGAAAGATACTTAAAAGTCACAGGTACTTGT CAAGTTCAAGAGTTCTTTTAGATTAGAAaccaagaaaaatttttaaataa aaaaataacgatatttttaaatcaatcatgTGTTAAGTCAAAAGGGTGAA AATAAATATACATCTAATTcgtcaaattcaaaaacaaaacaaaagtataA ATTCGCTCAGTTTAAAAAGATTTGAGCACTTACAAATTAACATCGTTTCA AGTTTGGTAAAATATCTCCTTCAGGCTGCTTGATTcctaattcttttttt aatttctgcctAGAATAGGTTGATTTTAAAATCCTTTTCGTTCAAAAGTA TTGAAATTCATCCTTCTTTCCAGAGCTCTAGTTTTAGCTTTCTCTTTTAC CCCAAATTCCCCcttttccattttattttgacTATTGCAGTATTGAAACG TCTccaaatgggggggggggggggggtttttttaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000161XLOC_000161Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000286-exon-sc0000001-1491911889:470309..471197TCONS_00000286-exon-sc0000001-1491911889:470309..471197Clytia hemisphaericaexon
TCONS_00000286-exon-sc0000001-1510915933:470309..471197TCONS_00000286-exon-sc0000001-1510915933:470309..471197Clytia hemisphaericaexon
TCONS_00000286-exon-sc0000001-1575043694:470309..471197TCONS_00000286-exon-sc0000001-1575043694:470309..471197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:470309..471197 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.939117 1.01754 2.06756 3.23645 13.3681 7.83934 18.6474 17.9598 19.0809 12.2531 33.0894 17.026 14.4347 18.594 9.53946 12.3038 7.01075 8.8317 12.7006 7.89292 28.5513 30.4853 12.9811 10.9859 47.3335 49.1431 7.86937 9.46729 32.0232 24.6027
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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