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TCONS_00000265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000265
Unique NameTCONS_00000265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000265 ID=TCONS_00000265|Name=TCONS_00000265|organism=Clytia hemisphaerica|type=transcript|length=281bp
CGACTATCCCTTACGTGTGGCGCGTTAGACTTTCATAAGGAGAAGGAAGA
TACATGAACAAAAATTTAGAGAGGGGATATGAGTTATGGAAATTatgcaa
aatcaaaacagatGCAGGTGATAACCTCTCAACTTTTGCATTGAGTGGGG
TAGAGGAAGGTTTAGTGGAAGAGCATTTGAAGTATTTCAGATTTCGATAT
GACAATACAGAACTTGAGGAGGGCTATAAACTTTGGGCTGTTCTGAGAGA
GAAAATGCATGAATGAACTAAGATATCCTGT
Run BLAST on NCBI

transcript from alignment at sc0000001:2528828..2532888-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000265 ID=TCONS_00000265|Name=TCONS_00000265|organism=Clytia hemisphaerica|type=transcript|length=4061bp|location=Sequence derived from alignment at sc0000001:2528828..2532888- (Clytia hemisphaerica)
CGACTATCCCTTACGTGTGGCGCGTTAGACTTTCATAAGGAGAAGGAAGG TATTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGGATATTCAGAGAA AGCTTGTTATTGATCAGCCACCTACTGACATTTTCCATCTCCCTATTCAC CAAGATTTCTAGTTCCTTGAGATCACTGTGACGAGCCACCAGGCAAGTAT CATCTGCAAATAAGGTATAGAGAAATGATTCTGTCGACTTGGGGATATCG TTAATATAGAGTAGAAACAAAAGGGGACCCAGGACCGAGCCTTGAGGAAC ACCATATTTCATTTTGAGTGGAGTGGAAAGGTTATTTCCAACACTGACAC ACTGGTACCTTGAATCTAGGTAACTCTCAAACCATTTCAACATTGGGCCT CTGATACCTGACCTCATTAACTTACCAAGGAGGATTTTGTGGTCCACTGT ATCGAATGCTTTTGCTAGGTCTAGGAAAATAGCACAGCAGTGGTCTTTAT TTTTCATGGCTGTCGATATTTTATTTGTAAGGTCTAGAATGGCATGACTT GTTGACTTTTTGGGTTGAAAACCAAATTGATTTGAAGAAAGTATTTCAAA GTCAGTAAAAAAATTGATAAGACGCTGGTGTATGACTTTCTCAAATATTT TATCGAATATTGGGAGTACAGAAATGGGTCGATAGTTCTTGAAGTCGTTC TTTGCCCCATTATTTTTAAAGAGAGGCACTACCTTTGAGAATTTGAGTTT TTCTGGAAAAATTGATTGTGTGACAGAAGCATTGATTAAGAATGATAGAA TAGGAGATATGGCCTCATCAATTTGTTTAATCACAGCTACTGGAAAATTG TAAATGTCACTTGCTTTCTTCTCATCAAGTTGTTTTACAAAAGCAGAAAT TTCAGCTTTGTCAGTTGGTTTGAAAAAAAAACTTTTATTACTAGGGATAA TAGAATTTAGTGGATCTGTGCCTTTTTTTTGCTTGGAAAGTAAATTTTCA GCAACATTTGAAAAGTGTTCGTTAAATTTTTGAGCGATTTTCGAATTGCC TGTAATTTTCTTGTCATTGTATAACATTGTTGGTGGAATATAATTGTTTT TGGTTCTATGTTGTTTGTATTTGACTTGTTTTATCATTTTGAATTTTTTT TTGTATCCTACCCACAAGTGAACCACAAAACCAGCATTGCAACATTTAAA ACGAAACTTCCTTTATGGGAGAATCAGGAGAATGGGACCTTCCTGCCCTT CCTGCCTCCTCTCCCGCCCAGACTATCATATCTGTTATATACGTCACAAG GCGTCTTTTTGTCTGAACAAAAGGCAGCAAAACTCCGAGCAGAACATCAT ATTTTCCAACATGGCGGACGACGAAGTTGCATCAAACAGCGAAGTGTTCG ACGATGTCGATTCAGATCCTGGATCAATCATAAACAATGTAGTTGAATCA TGCAGTAAAATTTTAATCCCTTCCATGGCTCAACCTTCCATGAACAGGCC ACACAATGAAGAAGAAGTAAATACGACTGACGCCATTTTTCATACGGATC ACGATGATGAAGGGATCAACACTAAAAGTGACGAAGAATCGTCGCTGGAA GATCAAAACACCGACGATGTGGTAAACAACATTAAGCGTGGAAGTCCTCT TCTCGAAGATAAACAAAGGATCAGTGGTCACAGTCCAAGAGTTGTAAGAT GGACACTAGATACTATGGCAGCTGCAATGGATGCAGTTTTTGCAGGGGAG ATGACCACAACAAATGCATCAAGAAAATTTGGAATCCCCAGAACCACCCT CCTTGATAGGCTTTCAATGAAAGTTAAGAGGCAACATTTAGACTGTCCAG GTTCTTTCCCTCTTAATGCTGATAATGATGCAAAAGTTGTTGATTTTATT CTTGCTAATCAAAATCTTGATAAACAAACTTTAATCAAGGGGCTTTTAAG CCTTGGAGAGGAATTAGCTAGTATGCAGGGAAGACCTTTCAATGGGCCAT TAAACTCCAGGAAATGGTTGAAATTGTTTGTTCAAAAGCATCCAAATTTG AATGTTTTTTCTTACAGCCGATCTAGAGCACCAAGCTCACGCTCAGTTTC TTTTTCTGGCACTAGCTCCCATGCTCGACTTCAATCGTCATCTATTTCTA ATGATAATACAGTGCTTATTCCTCAGCAAATATTACACATCCAGCATGAT CCTTTAGCACAATTGCAATCTGAACATGGCACAGAACAAGATTCTCCAAC TCTTCCAGATNTTTGAATGTTTTTTCTTACAGCCGATCTAGAGCACCAAG CTCACGCTCAGTTTCTTTTTCTGGCACTAGCTCCCATGCTCGACTTCAAT CGTCATCTATTTCTAATGATAATACAGTGCTTATTCCTCAGCAAATATTA CACATCCAGCATGATCCTTTAGCACAATTGCAAACTGAACATGGCACAGA ACAAGATTCCCCAACTCTTCCAGAAAACGATAATGTGTTTGATTCTTTGG AGTCATCCTTAGCAAAGCAAGGCGTTCGAGCTATAGAACAAAAACTGGGA GCTGAACAATTGTCATATTTCAATTATAGATACATGAACAAAAATTTAGA GAGGGGATATGAGTTATGGAAATTATGCAAAATCAAAACAGATGCAGGTG ATAACCTCTCAACTTTTGCATTGAGTGGGGTAGAGGAAGGTTTAGTGGAA GAGCATTTGAAGTATTTCAGATTTCGATATGACAATACAGAACTTGAGGA GGGCTATAAACTTTGGGCTGTTCTGAGAGAGAAAATGCATGAATGAACTA AGATATCCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000142XLOC_000142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000265-exon-sc0000001-1575043694:2532840..2532888TCONS_00000265-exon-sc0000001-1575043694:2532840..2532888Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1575043694:2528828..2529059TCONS_00000265-exon-sc0000001-1575043694:2528828..2529059Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1510915933:2532840..2532888TCONS_00000265-exon-sc0000001-1510915933:2532840..2532888Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1510915933:2528828..2529059TCONS_00000265-exon-sc0000001-1510915933:2528828..2529059Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1491911889:2532840..2532888TCONS_00000265-exon-sc0000001-1491911889:2532840..2532888Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1491911889:2528828..2529059TCONS_00000265-exon-sc0000001-1491911889:2528828..2529059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2528828..2532888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.41506 7.92668 0 1.34567 29.4334 18.8452 28.1406 29.0487 6.50758 4.61282 3.50769 12.0368 3.95129 8.32615 3.20516 2.43307 3.79742 8.07382 4.5673 0 6.58108 3.65775 10.4175 9.36284 11.0377 14.9526 1.26465 3.25979 2.37405 4.2749
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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