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TCONS_00000250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000250
Unique NameTCONS_00000250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000250 ID=TCONS_00000250|Name=TCONS_00000250|organism=Clytia hemisphaerica|type=transcript|length=602bp
aaaaaacctCTCAGCGTATGCAGAAGTAATTCTCATCCTGAATTTACTTG
TCAAAACTGTCAGTTATCGTAATAAAGTTAGTGAAaagtgaaaagtgaaa
aataagcaACCAAAATGGTTACTTTTGTCGATCGAAATGGCGTGGAACTA
ACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGCTTGCTTCC
AGCCAATGCAGGTGGTCAACCATCAAAAGTTAAGTCAAACTTAGCAAAAA
ACAGCCATCATAAAAAGGTTAGCGAAAAGTTGGCGCCCAAAATGGTTACT
TTTGTCGATCGAAATGGCATGGAATTAACCGTCACTCCATCAAAGTTTGA
ACAATTAAAGAAGTGTGGATTGCTTCCAGCCAACGCAGGTCAACCATCAA
AAGTTAAGTCAAACTTAGCAAAATACAGCCATCATAAAAAAGCTAGCGAA
AAGTTGGCGCCCAAAATGGTTACTTTTGTCGATCCAAATGGCGTGGAATT
AACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGATTGCTTC
CAGCCGACGCAGACCAATCATCGAAAGTTGAGTCAAACTTAGCAAAAGAC
Ag
Run BLAST on NCBI

protein sequence of TCONS_00000250-protein

>TCONS_00000250-protein ID=TCONS_00000250-protein|Name=TCONS_00000250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MVTFVDRNGVELTVTPSKFEQLKKCGLLPANAGGQPSKVKSNLAKNSHHK
KVSEKLAPKMVTFVDRNGMELTVTPSKFEQLKKCGLLPANAGQPSKVKSN
LAKYSHHKKASEKLAPKMVTFVDPNGVELTVTPSKFEQLKKCGLLPADAD
QSSKVESNLAKD
Run BLAST on NCBI

transcript from alignment at sc0000001:2280372..2281150-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000250 ID=TCONS_00000250|Name=TCONS_00000250|organism=Clytia hemisphaerica|type=transcript|length=779bp|location=Sequence derived from alignment at sc0000001:2280372..2281150- (Clytia hemisphaerica)
AAAAAACCTCTCAGCGTATGCAGAAGTAATTCTCATCCTGAATTTACTTG TCAAAACTGTCAGTTATCGTAATAAAGTTAGTGAAAAGTGAAAAGTGAAA AATAAGCAACCAAAATGGTTACTTTTGTCGATCGAAATGGCGTGGAACTA ACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGCTTGCTTCC AGCCAATGCAGGTGGTCAACCATCAAAAGTTAAGTCAAACTTAGCAAAAA ACAGCCATCATAAAAAGGTTAGCGAAAAGTTGGCGCCCAAAATGGTTACT TTTGTCGATCGAAATGGCATGGAATTAACCGTCACTCCATCAAAGTTTGA ACAATTAAAGAAGTGTGGATTGCTTCCAGCCAACGCAGGCGGTCAACCAT CAAAAGTTAAGTCAAACTTAGCAAAAAACAGCCATCATAAAAAAGTTATC GAAAAGTTGGCACCCAAAATGGTTACTTTTGTCGATCGAAACGGCGTGGA ATTAACTGTCACTCCATCAAAGTTTGAACAACTAAAGAAGTGTGGATTGC TTCCAGCCAACGCAGGTCAACCATCAAAAGTTAAGTCAAACTTAGCAAAA TACAGCCATCATAAAAAAGCTAGCGAAAAGTTGGCGCCCAAAATGGTTAC TTTTGTCGATCCAAATGGCGTGGAATTAACCGTCACTCCATCAAAGTTTG AACAATTAAAGAAGTGTGGATTGCTTCCAGCCGACGCAGACCAATCATCG AAAGTTGAGTCAAACTTAGCAAAAGACAG

Coding sequence (CDS) from alignment at sc0000001:2280372..2281150-

>TCONS_00000250 ID=TCONS_00000250|Name=TCONS_00000250|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000001:2280372..2281150- (Clytia hemisphaerica)
GTCAACCATCAAAAGTTAAGTCAAACTTAGCAAAATACAGCCATCATAAA
AAAGCTAGCGAAAAGTTGGCGCCCAAAATGGTTACTTTTGTCGATCCAAA
TGGCGTGGAATTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGT
GTGGATTGCTTCCAGCCGACGCAGACCAATCATCGAAAGTTGAGTCAAAC
TTAGCAAAAGACATGGTTACTTTTGTCGATCGAAATGGCGTGGAACTAAC
CGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGCTTGCTTCCAG
CCAATGCAGGTGGTCAACCATCAAAAGTTAAGTCAAACTTAGCAAAAAAC
AGCCATCATAAAAAGGTTAGCGAAAAGTTGGCGCCCAAAATGGTTACTTT
TGTCGATCGAAATGGCATGGAATTAACCGTCACTCCATCAAAGTTTGAAC
AATTAAAGAAGTGTGGATTGCTTCCAGCCAACGCAGGTCAACCATCAAAA
GTTAAGTCAAACTTAGCAAAATACAGCCATCATAAAAAAGCTAGCGAAAA
GTTGGCGCCCAAAATGGTTACTTTTGTCGATCCAAATGGCGTGGAATTAA
CCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGATTGCTTCCA
GCCGACGCAGACCAATCATCGAAAGTTGAGTCAAACTTAGCAAAAGACAT
GGTTACTTTTGTCGATCGAAATGGCGTGGAACTAACCGTCACTCCATCAA
AGTTTGAACAATTAAAGAAGTGTGGCTTGCTTCCAGCCAATGCAGGTGGT
CAACCATCAAAAGTTAAGTCAAACTTAGCAAAAAACAGCCATCATAAAAA
GGTTAGCGAAAAGTTGGCGCCCAAAATGGTTACTTTTGTCGATCGAAATG
GCATGGAATTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGT
GGATTGCTTCCAGCCAACGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000136XLOC_000136Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000250-proteinTCONS_00000250-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000250-exon-sc0000001-1575043694:2280763..2281150TCONS_00000250-exon-sc0000001-1575043694:2280763..2281150Clytia hemisphaericaexon
TCONS_00000250-exon-sc0000001-1575043694:2280372..2280585TCONS_00000250-exon-sc0000001-1575043694:2280372..2280585Clytia hemisphaericaexon
TCONS_00000250-exon-sc0000001-1510915933:2280763..2281150TCONS_00000250-exon-sc0000001-1510915933:2280763..2281150Clytia hemisphaericaexon
TCONS_00000250-exon-sc0000001-1510915933:2280372..2280585TCONS_00000250-exon-sc0000001-1510915933:2280372..2280585Clytia hemisphaericaexon
TCONS_00000250-exon-sc0000001-1491911889:2280763..2281150TCONS_00000250-exon-sc0000001-1491911889:2280763..2281150Clytia hemisphaericaexon
TCONS_00000250-exon-sc0000001-1491911889:2280372..2280585TCONS_00000250-exon-sc0000001-1491911889:2280372..2280585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2280372..2281150 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0902742 0.564082 0.801071 0 0.178359 0 0.232123 0 0 0.0942278 0 0 0 0 0 0.165032 0.203305 0 0 0.200838 0.0872822 0.127719 0.155653 0.188205 0.29077 0 0 0.132105 0 0.102084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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