TCONS_00000249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000249
Unique NameTCONS_00000249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000249 ID=TCONS_00000249|Name=TCONS_00000249|organism=Clytia hemisphaerica|type=transcript|length=466bp
TTCAGGGGATAACAAAACAATAATTCAAAATGGCGATGATTGCAGGTGAT
TTCAAGAGCTTCCTAACTATCAAAATCAAGCAGCGAGATGACAATTTATT
TGATCAATATTCCCGAATCTTTATGGTGAAAGTCCTGTTGATCACATCAA
TGGTTTGTGGAATCTCTTGGTATAGTGACAAATTCAATTGCATCATACCT
GAAAAAATGATGGTTTCGGAAGACTTTCCAGCATTCGTCGGTGCAACATG
CTGGATCCAAGGTGTTTATATCTACAAAGAACTTTACGGTCGGAATGACG
ACGTTGCATATTTTGGTATCACAAAAGATATTGATACAGATGGAATGTAT
AATGGTGAATTATGTAAAACGGAGAAAAAGTTGAATAAAGATTCGAACGA
ATACTGTGAACCAATGGAAAAGACATTCTATCAACAGTACCAATACATGC
CGTTCCTTCTTGGTGC
Run BLAST on NCBI

transcript from alignment at sc0000001:2267209..2269521-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000249 ID=TCONS_00000249|Name=TCONS_00000249|organism=Clytia hemisphaerica|type=transcript|length=2313bp|location=Sequence derived from alignment at sc0000001:2267209..2269521- (Clytia hemisphaerica)
TTCAGGGGATAACAAAACAATAATTCAAAATGGCGATGATTGCAGGTGAT
TTCAAGAGCTTCCTAACTATCAAAATCAAGCAGCGAGATGACAATTTATT
TGATCAATATTCCCGAATCTTTATGGTGAAAGTCCTGTTGATCACATCAA
TGGTTTGTGGAATCTCTTGGTATAGTGACAAATTCAATTGCATCATACCT
GGTAAGAGCAAAACTTAATATTTATACGCAGACACCCCTTGCTCACAGCC
CTAGTGGAAGGTTTTCTTACAGTGAAATAAGTATTTCTTTCGAAATTCAA
TAGCTCAAAAATTGTAGGAGTGGTTTTGGAGTGCATTGAATTTCAATGAA
AATAGAGAGCTAATTTATCAGTGAAATGGTAGGGTATTTTTCTAACCGGA
CACAAAGTTTTGACCAACTTTTAGACAGGGGTTCAACCAGGATTTTATTT
GATTGTTATGCATGTGGACTTTCGGATAGTTAGTGGTAAGTACGTAAGCT
CAAAATTAGGGGAAAACATCCGGGCTATTTTGGGTACTTCCGTATAGAAA
TATATTGCGTAATATCACGAGTTATAAACTTTTAAATTTTCACAGTGAAG
TATCTATCCAAATATCATGGGTAATGCTTTAACTTTTAACTACAGTTCTC
GCTCTCTAATTCGATCTTTAATTGGAATTGGATTCTCATCGAATAAGGGA
GCGACATTTTTGAGACTTTCTTATTGACGATGGCTTTCATTTATCAAATA
GTGAAGCCTATCGAATAGTAGAACGTCGAATTAGAGAGCTTCAACTGTAT
TCTTACTTTCTAGAAAAAATGATGGTTTCGGAAGACTTTCCAGCATTCGT
CGGTGCAACATGCTGGATCCAAGGTGTTTATATCTACAAAGAACTTTACG
GTCGGAATGACGACGTTGCATATTTTGGTATCACAAAAGATATTGATACA
GATGGAATGTATAATGGTGAATTATGTAAAACGGAGAAAAAGTTGAATAA
AGATTCGAACGAATACTGTGAACCAATGGAAAAGACATTCTATCAACAGG
TAAGAATATGAGTGACTCACGCAAAAAGAGTTAAAGCTTTTGAAAAGCTT
CACTTTGTTCGTATTTTAGTGGAGTGAAAAAGACTTATTACTTCGTACTT
TATATTTGGTTCAGTGGCTTAAATACCGAGCTTTCAAAGTTGAATTTCCT
TTTGAAAATGTCCGAAGAAAAACCTGAATTCTGAGGAACTACTTATCTCA
AATCTCAGGCTCTTAGATTCCAGTATTTCAGTACGGTACATACATACCCT
TCCTTCTTGGTGCAATCATAGTATAAGAAAGCCGCGGCTGGAATATGTAC
CGCATTGTCTTTTCAGTTAATTGCTGTTCCATCTCTGTCTCCGAGCTTTA
TAAGAACATCAAGATGCTCAGTTTATCATTGGTAGATAGTTTTTGAAATT
TTTCTCTTATTTTCCTTCACAAAAAGTTTTTTTGTTGCTAGATATCTTTG
AATCTGTACCCAATAGAACACTTGAACTAATTTTGGACATATTTTAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATTTCGAGGCACCTCATTAATTTTTGAGTTCTTTCAGC
CCAGCCATTTTGTGCTTGTTTAAATTTCTTAGTGTTGATTTTTCCTTTAC
AATGATTTTATAATGCAAGAGCATATCATTAATTTCTAAAACGCACTGAG
AAGTAAGTATTAACGACAAACCAATAAAATATACCATTAAAGATGCTACA
TTACTGATTTCTTGATCAACAAATAGTCATCAAATACGACAGAGATAGAA
CAAGAGAAGTTCAGATGTTATCATTCCAGCCGCGGCTTTCTTATACTATG
GTGCAATGTCTCTCATGCTATATACCGTACAAATAAAGAATCAAATGCTG
CCTCCAACTTAAAATAAAAAGTTGAGTTTGTTGTCGTTATTGTATGCCCA
AAATTACAATTTCATAATAATTCTACAACTTCAGTACCAATACATGCCGT
TCCTTCTTGGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000135XLOC_000135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000249-exon-sc0000001-1575043694:2269321..2269521TCONS_00000249-exon-sc0000001-1575043694:2269321..2269521Clytia hemisphaericaexon
TCONS_00000249-exon-sc0000001-1575043694:2268473..2268708TCONS_00000249-exon-sc0000001-1575043694:2268473..2268708Clytia hemisphaericaexon
TCONS_00000249-exon-sc0000001-1575043694:2267209..2267237TCONS_00000249-exon-sc0000001-1575043694:2267209..2267237Clytia hemisphaericaexon
TCONS_00000249-exon-sc0000001-1510915933:2269321..2269521TCONS_00000249-exon-sc0000001-1510915933:2269321..2269521Clytia hemisphaericaexon
TCONS_00000249-exon-sc0000001-1510915933:2268473..2268708TCONS_00000249-exon-sc0000001-1510915933:2268473..2268708Clytia hemisphaericaexon
TCONS_00000249-exon-sc0000001-1510915933:2267209..2267237TCONS_00000249-exon-sc0000001-1510915933:2267209..2267237Clytia hemisphaericaexon
TCONS_00000249-exon-sc0000001-1491911889:2269321..2269521TCONS_00000249-exon-sc0000001-1491911889:2269321..2269521Clytia hemisphaericaexon
TCONS_00000249-exon-sc0000001-1491911889:2268473..2268708TCONS_00000249-exon-sc0000001-1491911889:2268473..2268708Clytia hemisphaericaexon
TCONS_00000249-exon-sc0000001-1491911889:2267209..2267237TCONS_00000249-exon-sc0000001-1491911889:2267209..2267237Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2267209..2269521 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.5394	20.6817	5.44873	15.8656	0	0.0856336	1.0277	0	0	2.29521	0	6.24514e-09	2.77463	12.0632	4.78746	4.26145	0	2.59085	11.5774	5.41226	0	2.2157	1.4168	7.29116	0	1.00918	12.4785	23.4326	17.5211	4.1461
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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