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TCONS_00000248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000248
Unique NameTCONS_00000248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1081

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000248 ID=TCONS_00000248|Name=TCONS_00000248|organism=Clytia hemisphaerica|type=transcript|length=1081bp
TCAGGGGATAACAAAACAATAATTCAAAATGGCGATGATTGCAGGTGATT
TCAAGAGCTTCCTAACTATCAAAATCAAGCAGCGAGATGACAATTTATTT
GATCAATATTCCCGAATCTTTATGGTGAAAGTCCTGTTGATCACATCAAT
GGTTTGTGGAATCTCTTGGTATAGTGACAAATTCAATTGCATCATACCTG
AAAAAATGATGGTTTCGGAAGACTTTCCAGCATTCGTCGGTGCAACATGC
TGGATCCAAGGTGTTTATATCTACAAAGAACTTTACGGTCGGAATGACGA
CGTTGCATATTTTGGTATCACAAAAGATATTGATACAGATGGAATGTATA
ATGGTGAATTATGTAAAACGGAGAAAAAGTTGAATAAAGATTCGAACGAA
TACTGTGAACCAATGGAAAAGACATTCTATCAACAGTACCAATACATGCC
GTTCCTTCTTGGTGCATTGGCTCTCATCTATTACATACCATACATGTTCC
ACAAAGTGGTCAACCATGACATTGTCAAATTGAAGAACCAAGTGGATAAG
GAGAATCCAGATGCTTCTGCTATTTACCGCATCTTTTTCAAACAGCACAG
AGGAAAAGTATTAAGTCAAACGCCAGTCATGCACCGTCAAATTCTCATCA
TCCTGGTGAAGCTAACATACTTGGTGGTCAACATTGGAACATTCTTGTCT
TTCGACAGTTGTTTGAATGGATTGTTCGTCAGCTTTGGAAGTAATTGGTA
TAGTTGGGCATCTTTAGAGAATACAGATCGATTTGATTATATGGGTGGTT
CCGAATTCCCTAAACCagctAATGAGCTTTTACCACCTTTCGGTTACTGT
GAAATCTGGTCATCAGCAAAAGACATTCGTGATACCCACGCCAACAGACA
TAAAGTGATTTGCGAAATCTCACAACACGTTCTTTACCAATatactttta
ttttgttatggTTATTGATCGTCATTGGTATTTTGGTGTCCGCTATTGGT
TTGATTGTCAGCTTCTTTAAAGTGTTCTCAGCTTGTATGGGAATGAGGCA
AATTGGATTGACTCCAGAATCGAAGAAGATC
Run BLAST on NCBI

transcript from alignment at sc0000001:2262421..2269520-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000248 ID=TCONS_00000248|Name=TCONS_00000248|organism=Clytia hemisphaerica|type=transcript|length=7100bp|location=Sequence derived from alignment at sc0000001:2262421..2269520- (Clytia hemisphaerica)
TCAGGGGATAACAAAACAATAATTCAAAATGGCGATGATTGCAGGTGATT TCAAGAGCTTCCTAACTATCAAAATCAAGCAGCGAGATGACAATTTATTT GATCAATATTCCCGAATCTTTATGGTGAAAGTCCTGTTGATCACATCAAT GGTTTGTGGAATCTCTTGGTATAGTGACAAATTCAATTGCATCATACCTG GTAAGAGCAAAACTTAATATTTATACGCAGACACCCCTTGCTCACAGCCC TAGTGGAAGGTTTTCTTACAGTGAAATAAGTATTTCTTTCGAAATTCAAT AGCTCAAAAATTGTAGGAGTGGTTTTGGAGTGCATTGAATTTCAATGAAA ATAGAGAGCTAATTTATCAGTGAAATGGTAGGGTATTTTTCTAACCGGAC ACAAAGTTTTGACCAACTTTTAGACAGGGGTTCAACCAGGATTTTATTTG ATTGTTATGCATGTGGACTTTCGGATAGTTAGTGGTAAGTACGTAAGCTC AAAATTAGGGGAAAACATCCGGGCTATTTTGGGTACTTCCGTATAGAAAT ATATTGCGTAATATCACGAGTTATAAACTTTTAAATTTTCACAGTGAAGT ATCTATCCAAATATCATGGGTAATGCTTTAACTTTTAACTACAGTTCTCG CTCTCTAATTCGATCTTTAATTGGAATTGGATTCTCATCGAATAAGGGAG CGACATTTTTGAGACTTTCTTATTGACGATGGCTTTCATTTATCAAATAG TGAAGCCTATCGAATAGTAGAACGTCGAATTAGAGAGCTTCAACTGTATT CTTACTTTCTAGAAAAAATGATGGTTTCGGAAGACTTTCCAGCATTCGTC GGTGCAACATGCTGGATCCAAGGTGTTTATATCTACAAAGAACTTTACGG TCGGAATGACGACGTTGCATATTTTGGTATCACAAAAGATATTGATACAG ATGGAATGTATAATGGTGAATTATGTAAAACGGAGAAAAAGTTGAATAAA GATTCGAACGAATACTGTGAACCAATGGAAAAGACATTCTATCAACAGGT AAGAATATGAGTGACTCACGCAAAAAGAGTTAAAGCTTTTGAAAAGCTTC ACTTTGTTCGTATTTTAGTGGAGTGAAAAAGACTTATTACTTCGTACTTT ATATTTGGTTCAGTGGCTTAAATACCGAGCTTTCAAAGTTGAATTTCCTT TTGAAAATGTCCGAAGAAAAACCTGAATTCTGAGGAACTACTTATCTCAA ATCTCAGGCTCTTAGATTCCAGTATTTCAGTACGGTACATACATACCCTT CCTTCTTGGTGCAATCATAGTATAAGAAAGCCGCGGCTGGAATATGTACC GCATTGTCTTTTCAGTTAATTGCTGTTCCATCTCTGTCTCCGAGCTTTAT AAGAACATCAAGATGCTCAGTTTATCATTGGTAGATAGTTTTTGAAATTT TTCTCTTATTTTCCTTCACAAAAAGTTTTTTTGTTGCTAGATATCTTTGA ATCTGTACCCAATAGAACACTTGAACTAATTTTGGACATATTTTAGNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNATTTCGAGGCACCTCATTAATTTTTGAGTTCTTTCAGCC CAGCCATTTTGTGCTTGTTTAAATTTCTTAGTGTTGATTTTTCCTTTACA ATGATTTTATAATGCAAGAGCATATCATTAATTTCTAAAACGCACTGAGA AGTAAGTATTAACGACAAACCAATAAAATATACCATTAAAGATGCTACAT TACTGATTTCTTGATCAACAAATAGTCATCAAATACGACAGAGATAGAAC AAGAGAAGTTCAGATGTTATCATTCCAGCCGCGGCTTTCTTATACTATGG TGCAATGTCTCTCATGCTATATACCGTACAAATAAAGAATCAAATGCTGC CTCCAACTTAAAATAAAAAGTTGAGTTTGTTGTCGTTATTGTATGCCCAA AATTACAATTTCATAATAATTCTACAACTTCAGTACCAATACATGCCGTT CCTTCTTGGTGCAATGGCTCTCATCTATGTATAGCGCCAAATATGAATGA CACGCAAATTTTTGATTCTCAATTTTATTACTCTTATAATATTTTACAAC TTAGTACCAATACATGCCGTTCCTTCTTGGTGCATTGGCTCTCATCTATT ACATACCATACATGTTCCACAAAGTGGTCAACCATGACATTGTCAAATTG AAGAACCAAGTGGATAAGGAGAATCCAGATGCTTCTGCTATTTACCGCAT CTTTTTCAAACAGCACAGAGGTACGTCATTTTCAATTCCCTCGCATGACC AACTACCATAGAAATTTTGACACCCCCTTCTCACAGACCCGGTAAAATTT CTTCGGCCAGTGTTGGTAAAAATAGCGGACTAAAACTCAATCTGGATTGA TATTACCATTTTTCTCATGACTGGGGATTTGAATTCCTTTGTTTTGAGCA AGAAAATGTGGTCAGTGGGGATGTTAAGAATAGCACAATAATTTGCAGCG AGGATCGGATTATCTATGATTATTTTCTGTGGGGACAAAAATAAGAGTGA AATTTTCCACCGGGGACGATATCTTGGCCAGTTTTTCCTGTGGGAAGGGT TCCCAGTGGGTCTGTGAGAAAATGGTGTACTCTGTCTTTCCCGGGGAAGC ATTCCTGGCATGTTTCCAGGTATACCGGCAGAAATAAGTTTTTTGCTGCG TACAAATGACTACACGCAACGACCTTGAGATCGACCACCTAACAATAACT CCAATAACTCCAATAATAACTCCTAACAAAACCCCAATAACTCTTGGGAC TTATTTTGAACCTGCACAAAGTGTTGGTCTTTTTCTGTTATAGTGGTCAA TAGGAAAATTTTGCCAGGAAAGAGAAGGTTTAGTCACTCTACAGTACTTA ATGTTGTTCCAAAAACCATTTTATCTAACCTCCATTAGCTAGTCATAGCT TAAAAGAGCTTAATCTAGCGAAAAACTCTTGTCACTTTTAGTAAGCTGAG GCTAATAGTGCTCTAATGGTACTAAAGTTTTTGTCTGAAAGCCATTTTCA GCATCAAAGTTTTCATTAGTTCAAACTCTTTGATTGATACATGAAATGCA AATGATTTATTTGGTTATTTGGTGTGTTAAATTTACATTGTGTTACGCCG CCGTAACTTTGCGAGTGAATTCACTGTAATTTAGCTGATAACCAACTCAG CGCCAAGACCTGGTGAGTGGGCGGCCGCTTTCCACCCTTTTTGTCTAAAT GTCATTGCTTCGGGTCTATATTATCATCTTGTCTAAACTCTTCTTCATAT ATTATTGCAAATTAGAAGTTAAACTTTACTTTTTTAATTTCACTACACAG GAAAAGTATTAAGTCAAACGCCAGTCATGCACCGTCAAATTCTCATCATC CTGGTGAAGCTAACATACTTGGTGGTCAACATTGGAACATTCTTGTCTTT CGACAGTTGTTTGAATGGATTGTTCGTCAGCTTTGGAAGTAATTGGTATA GTTGGGCATCTTTAGAGAATACAGATCGATTTGATTATATGGGTGGTTCC GAATTCCCTAAACCAGGTAATTCATGATATTCATGACGTAATGTCTTCCA CGAAAAAAACCCGGTTTTTACCAGTAGTGGCAAATTTAAACTAGACAAAA GTTGCCTCTACTGGCGAAACCGGGGTCTTTCCGTAGAAAACATTAAGTCA AGAATATCATGAAAAGAAGCACATGTTTATGGTATTTATAATTTCATTAG GCCCCTTTATCATGACTCAAAAGCTATTTTCCCTATTTCTCGGTGCTGTG TCCGTGGAAAACACCAATCAGTGTAGCAAGAGATTACTTAATTATTAAGA TTTGGTGTTTTAACTTCGATTTTTTTTTAATTTTATCTAATGGACCTTTT ACAACCTTCCTTTTGGCTATTTTCCCTTTTCCTAGGTTTCGCATGGCAGG ATATGCAGTCTCATACTAATTTTTGGTAATAGATTTTAAGAAGTCTGGTG TCTAATTCGTGTTTTTTTTGTTTTAGCTAATGAGCTTTTACCACCTTTCG GTTACTGTGAAATCTGGTCATCAGCAAAAGACATTCGTGATACCCACGCC AACAGACATAAAGTGATTTGCGAAATCTCACAACACGTTCTTTACCAATA TACTTTTATTTTGTTATGGTTATTGATCGTCATTGGTATTTTGGTGTCCG CTATTGGTTTGATTGTCAGCTTCTTTAAAGTGTTCTCAGCTTGTATGGGA ATGAGGTATGTAGGTTGAATCATTGCATTTAAGGGCTAGACCCCGAAGGG ATAGAGTAGAATCTCTAACCTTTCTCAGACAAGAGAAAGTGGAGCCACTT ATTTCCCATTCAGTAAGGCACCTAGAACGCGCCGCAGCGGATTTTTTTCC GTCAACGAACGAAGACCTACGCTAGCGGCCGAATACCTTTAAAACTTTAA TGCGTGGTTTTCCAGCGGTCGAAGACCTACAAATTTAATGTGCGATCAGT TTTCAGCGCCAGAAGACCTACACAAACGGCCGAAGACCTGCAAAACTTAG AAATTTGAGAATCTAAATCTGAGCCAGCGGACGAATACCTTTCTTTGCTG CATGAAAGTTTTTCGCACCAAACTGCCATTCAAGCAATAAATTTTTAATA TTTCGTGAAATAAATTCTTTTCGTGATAAGTCACATGACAACATAATGGT ACTCGGTAGCACATTTCCTACGAAATTCACCTAGAAACTCAGCATATGCT TGCTTGTGATGGAGTCATACCAGATTTGAATAGCTTTTTGATATAATTTT GCGTTTCCTCTGAAATCAATTTAAAGCTTAAAGCATGAAGAGAATTCACG GGGTGATTGTGTTTATGCTCTATATCTATGGTACNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNTTAGCGTAGGTCTTCGGCCGCTGGAAAACCGCACATT AAAGTTTTAAAGGTATTCGGCCGCTAGCGTAGGTCTTCGTTCGTTGACGG AAAAAAAATCCGCCGCGCCGCAGTCATGACAACGGATTGTATCTAGCGGT TCCATTGTTTTTGAGGACTGCATTTTTTTAAATCTAGCAATAGATTTTAG TTTCAATCCAGTGTTTGTGTAAAAACCACACACGGGCGTTCTGGATGGGA AATAAGTGGTTTCATTTCCCAGCAAGGACTCTCGAGTCTAGCCCTTCGGG CTTGGAAGTCAATGGGTGGAATGCACCAAATTAAATATTTTTACGCGTTG GTTAGTTAAGCTGTCTATGACCTAGACTAGAGACTACTCCTGGCTTAGAC GATGTTATTGTCCATTACAGTGATAATAAAGGCGGGGAGATATACGCACG GAGTTTAAAATCGGTGGTAAAGTTTTGAAGAAACGACTGGTAAACTTCAT CGGCTGTAAACTCTTTTTGACAAAAAAAACCCGTTTGCGAATTTTCTTCG GCTTTGGGCTTATTTTCTTAGATAATGATTTGTCTTAGACTATAGCATAG TCTTCTCCACGCTGAACACGCCCCTTATTTTCATATGATATTCTTATAAA ATCTGACCCTTTCAAAAACATTTCTTAATCCTATTCTTACCATCCAAAAG CAACCTAGATTCCAAAGCAAAAGCTCCAAATTAAGAACTACCATTTTCTA CCGGACCATTTAATCACCATTCAGTCTATCAAAATCCCTTAAGAGAACCC TGGAATATCTAAGGCTTTGAGACAGCCTTCTAAAATCTGTGTCAAGAAGG ACTCTTCTTCACTTTCTTGAACAAATTTTGGAAAAGAAATTGATGCGAAA TATAAGCCCGTTCAAATATCTTTCCAACGGTACCAAACTTTTCATTTATA CGACAATTATTTGGAAATTTATGGCCAAAAATGTTCTTGCTCTGATAAAG AAATGCATTTCTTATTCAAGCCCTCGTATTTGTAGAAGATCTTTTGGTTA AAATCTGTTGTTGTATTGAGCACTAGGTCAGGCATGAATTTCATCAAAAA CTTTTCTAATTTACAGGCAAATTGGATTGACTCCAGAATCGAAGAAGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000135XLOC_000135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000248-exon-sc0000001-1575043694:2269321..2269520TCONS_00000248-exon-sc0000001-1575043694:2269321..2269520Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2268473..2268708TCONS_00000248-exon-sc0000001-1575043694:2268473..2268708Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2266951..2267116TCONS_00000248-exon-sc0000001-1575043694:2266951..2267116Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2265655..2265870TCONS_00000248-exon-sc0000001-1575043694:2265655..2265870Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2264966..2265194TCONS_00000248-exon-sc0000001-1575043694:2264966..2265194Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2262421..2262454TCONS_00000248-exon-sc0000001-1575043694:2262421..2262454Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2269321..2269520TCONS_00000248-exon-sc0000001-1510915933:2269321..2269520Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2268473..2268708TCONS_00000248-exon-sc0000001-1510915933:2268473..2268708Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2266951..2267116TCONS_00000248-exon-sc0000001-1510915933:2266951..2267116Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2265655..2265870TCONS_00000248-exon-sc0000001-1510915933:2265655..2265870Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2264966..2265194TCONS_00000248-exon-sc0000001-1510915933:2264966..2265194Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2262421..2262454TCONS_00000248-exon-sc0000001-1510915933:2262421..2262454Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2269321..2269520TCONS_00000248-exon-sc0000001-1491911889:2269321..2269520Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2268473..2268708TCONS_00000248-exon-sc0000001-1491911889:2268473..2268708Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2266951..2267116TCONS_00000248-exon-sc0000001-1491911889:2266951..2267116Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2265655..2265870TCONS_00000248-exon-sc0000001-1491911889:2265655..2265870Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2264966..2265194TCONS_00000248-exon-sc0000001-1491911889:2264966..2265194Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2262421..2262454TCONS_00000248-exon-sc0000001-1491911889:2262421..2262454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2262421..2269520 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.5348 46.0881 66.6735 53.028 0.274333 0.0177672 0 0.674877 2.04524 7.29926 2.7567 2.16776 20.6681 6.96936 20.5145 24.2306 1.42081 2.73993 12.8041 28.2686 1.90205 2.14607 28.4947 26.9309 10.7047 13.5291 26.5966 27.5668 22.3859 20.8763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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