TCONS_00000248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000248
Unique NameTCONS_00000248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1081

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000248 ID=TCONS_00000248|Name=TCONS_00000248|organism=Clytia hemisphaerica|type=transcript|length=1081bp
TCAGGGGATAACAAAACAATAATTCAAAATGGCGATGATTGCAGGTGATT
TCAAGAGCTTCCTAACTATCAAAATCAAGCAGCGAGATGACAATTTATTT
GATCAATATTCCCGAATCTTTATGGTGAAAGTCCTGTTGATCACATCAAT
GGTTTGTGGAATCTCTTGGTATAGTGACAAATTCAATTGCATCATACCTG
AAAAAATGATGGTTTCGGAAGACTTTCCAGCATTCGTCGGTGCAACATGC
TGGATCCAAGGTGTTTATATCTACAAAGAACTTTACGGTCGGAATGACGA
CGTTGCATATTTTGGTATCACAAAAGATATTGATACAGATGGAATGTATA
ATGGTGAATTATGTAAAACGGAGAAAAAGTTGAATAAAGATTCGAACGAA
TACTGTGAACCAATGGAAAAGACATTCTATCAACAGTACCAATACATGCC
GTTCCTTCTTGGTGCATTGGCTCTCATCTATTACATACCATACATGTTCC
ACAAAGTGGTCAACCATGACATTGTCAAATTGAAGAACCAAGTGGATAAG
GAGAATCCAGATGCTTCTGCTATTTACCGCATCTTTTTCAAACAGCACAG
AGGAAAAGTATTAAGTCAAACGCCAGTCATGCACCGTCAAATTCTCATCA
TCCTGGTGAAGCTAACATACTTGGTGGTCAACATTGGAACATTCTTGTCT
TTCGACAGTTGTTTGAATGGATTGTTCGTCAGCTTTGGAAGTAATTGGTA
TAGTTGGGCATCTTTAGAGAATACAGATCGATTTGATTATATGGGTGGTT
CCGAATTCCCTAAACCagctAATGAGCTTTTACCACCTTTCGGTTACTGT
GAAATCTGGTCATCAGCAAAAGACATTCGTGATACCCACGCCAACAGACA
TAAAGTGATTTGCGAAATCTCACAACACGTTCTTTACCAATatactttta
ttttgttatggTTATTGATCGTCATTGGTATTTTGGTGTCCGCTATTGGT
TTGATTGTCAGCTTCTTTAAAGTGTTCTCAGCTTGTATGGGAATGAGGCA
AATTGGATTGACTCCAGAATCGAAGAAGATC
Run BLAST on NCBI

transcript from alignment at sc0000001:2262421..2269520-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000248 ID=TCONS_00000248|Name=TCONS_00000248|organism=Clytia hemisphaerica|type=transcript|length=7100bp|location=Sequence derived from alignment at sc0000001:2262421..2269520- (Clytia hemisphaerica)
TCAGGGGATAACAAAACAATAATTCAAAATGGCGATGATTGCAGGTGATT
TCAAGAGCTTCCTAACTATCAAAATCAAGCAGCGAGATGACAATTTATTT
GATCAATATTCCCGAATCTTTATGGTGAAAGTCCTGTTGATCACATCAAT
GGTTTGTGGAATCTCTTGGTATAGTGACAAATTCAATTGCATCATACCTG
GTAAGAGCAAAACTTAATATTTATACGCAGACACCCCTTGCTCACAGCCC
TAGTGGAAGGTTTTCTTACAGTGAAATAAGTATTTCTTTCGAAATTCAAT
AGCTCAAAAATTGTAGGAGTGGTTTTGGAGTGCATTGAATTTCAATGAAA
ATAGAGAGCTAATTTATCAGTGAAATGGTAGGGTATTTTTCTAACCGGAC
ACAAAGTTTTGACCAACTTTTAGACAGGGGTTCAACCAGGATTTTATTTG
ATTGTTATGCATGTGGACTTTCGGATAGTTAGTGGTAAGTACGTAAGCTC
AAAATTAGGGGAAAACATCCGGGCTATTTTGGGTACTTCCGTATAGAAAT
ATATTGCGTAATATCACGAGTTATAAACTTTTAAATTTTCACAGTGAAGT
ATCTATCCAAATATCATGGGTAATGCTTTAACTTTTAACTACAGTTCTCG
CTCTCTAATTCGATCTTTAATTGGAATTGGATTCTCATCGAATAAGGGAG
CGACATTTTTGAGACTTTCTTATTGACGATGGCTTTCATTTATCAAATAG
TGAAGCCTATCGAATAGTAGAACGTCGAATTAGAGAGCTTCAACTGTATT
CTTACTTTCTAGAAAAAATGATGGTTTCGGAAGACTTTCCAGCATTCGTC
GGTGCAACATGCTGGATCCAAGGTGTTTATATCTACAAAGAACTTTACGG
TCGGAATGACGACGTTGCATATTTTGGTATCACAAAAGATATTGATACAG
ATGGAATGTATAATGGTGAATTATGTAAAACGGAGAAAAAGTTGAATAAA
GATTCGAACGAATACTGTGAACCAATGGAAAAGACATTCTATCAACAGGT
AAGAATATGAGTGACTCACGCAAAAAGAGTTAAAGCTTTTGAAAAGCTTC
ACTTTGTTCGTATTTTAGTGGAGTGAAAAAGACTTATTACTTCGTACTTT
ATATTTGGTTCAGTGGCTTAAATACCGAGCTTTCAAAGTTGAATTTCCTT
TTGAAAATGTCCGAAGAAAAACCTGAATTCTGAGGAACTACTTATCTCAA
ATCTCAGGCTCTTAGATTCCAGTATTTCAGTACGGTACATACATACCCTT
CCTTCTTGGTGCAATCATAGTATAAGAAAGCCGCGGCTGGAATATGTACC
GCATTGTCTTTTCAGTTAATTGCTGTTCCATCTCTGTCTCCGAGCTTTAT
AAGAACATCAAGATGCTCAGTTTATCATTGGTAGATAGTTTTTGAAATTT
TTCTCTTATTTTCCTTCACAAAAAGTTTTTTTGTTGCTAGATATCTTTGA
ATCTGTACCCAATAGAACACTTGAACTAATTTTGGACATATTTTAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNATTTCGAGGCACCTCATTAATTTTTGAGTTCTTTCAGCC
CAGCCATTTTGTGCTTGTTTAAATTTCTTAGTGTTGATTTTTCCTTTACA
ATGATTTTATAATGCAAGAGCATATCATTAATTTCTAAAACGCACTGAGA
AGTAAGTATTAACGACAAACCAATAAAATATACCATTAAAGATGCTACAT
TACTGATTTCTTGATCAACAAATAGTCATCAAATACGACAGAGATAGAAC
AAGAGAAGTTCAGATGTTATCATTCCAGCCGCGGCTTTCTTATACTATGG
TGCAATGTCTCTCATGCTATATACCGTACAAATAAAGAATCAAATGCTGC
CTCCAACTTAAAATAAAAAGTTGAGTTTGTTGTCGTTATTGTATGCCCAA
AATTACAATTTCATAATAATTCTACAACTTCAGTACCAATACATGCCGTT
CCTTCTTGGTGCAATGGCTCTCATCTATGTATAGCGCCAAATATGAATGA
CACGCAAATTTTTGATTCTCAATTTTATTACTCTTATAATATTTTACAAC
TTAGTACCAATACATGCCGTTCCTTCTTGGTGCATTGGCTCTCATCTATT
ACATACCATACATGTTCCACAAAGTGGTCAACCATGACATTGTCAAATTG
AAGAACCAAGTGGATAAGGAGAATCCAGATGCTTCTGCTATTTACCGCAT
CTTTTTCAAACAGCACAGAGGTACGTCATTTTCAATTCCCTCGCATGACC
AACTACCATAGAAATTTTGACACCCCCTTCTCACAGACCCGGTAAAATTT
CTTCGGCCAGTGTTGGTAAAAATAGCGGACTAAAACTCAATCTGGATTGA
TATTACCATTTTTCTCATGACTGGGGATTTGAATTCCTTTGTTTTGAGCA
AGAAAATGTGGTCAGTGGGGATGTTAAGAATAGCACAATAATTTGCAGCG
AGGATCGGATTATCTATGATTATTTTCTGTGGGGACAAAAATAAGAGTGA
AATTTTCCACCGGGGACGATATCTTGGCCAGTTTTTCCTGTGGGAAGGGT
TCCCAGTGGGTCTGTGAGAAAATGGTGTACTCTGTCTTTCCCGGGGAAGC
ATTCCTGGCATGTTTCCAGGTATACCGGCAGAAATAAGTTTTTTGCTGCG
TACAAATGACTACACGCAACGACCTTGAGATCGACCACCTAACAATAACT
CCAATAACTCCAATAATAACTCCTAACAAAACCCCAATAACTCTTGGGAC
TTATTTTGAACCTGCACAAAGTGTTGGTCTTTTTCTGTTATAGTGGTCAA
TAGGAAAATTTTGCCAGGAAAGAGAAGGTTTAGTCACTCTACAGTACTTA
ATGTTGTTCCAAAAACCATTTTATCTAACCTCCATTAGCTAGTCATAGCT
TAAAAGAGCTTAATCTAGCGAAAAACTCTTGTCACTTTTAGTAAGCTGAG
GCTAATAGTGCTCTAATGGTACTAAAGTTTTTGTCTGAAAGCCATTTTCA
GCATCAAAGTTTTCATTAGTTCAAACTCTTTGATTGATACATGAAATGCA
AATGATTTATTTGGTTATTTGGTGTGTTAAATTTACATTGTGTTACGCCG
CCGTAACTTTGCGAGTGAATTCACTGTAATTTAGCTGATAACCAACTCAG
CGCCAAGACCTGGTGAGTGGGCGGCCGCTTTCCACCCTTTTTGTCTAAAT
GTCATTGCTTCGGGTCTATATTATCATCTTGTCTAAACTCTTCTTCATAT
ATTATTGCAAATTAGAAGTTAAACTTTACTTTTTTAATTTCACTACACAG
GAAAAGTATTAAGTCAAACGCCAGTCATGCACCGTCAAATTCTCATCATC
CTGGTGAAGCTAACATACTTGGTGGTCAACATTGGAACATTCTTGTCTTT
CGACAGTTGTTTGAATGGATTGTTCGTCAGCTTTGGAAGTAATTGGTATA
GTTGGGCATCTTTAGAGAATACAGATCGATTTGATTATATGGGTGGTTCC
GAATTCCCTAAACCAGGTAATTCATGATATTCATGACGTAATGTCTTCCA
CGAAAAAAACCCGGTTTTTACCAGTAGTGGCAAATTTAAACTAGACAAAA
GTTGCCTCTACTGGCGAAACCGGGGTCTTTCCGTAGAAAACATTAAGTCA
AGAATATCATGAAAAGAAGCACATGTTTATGGTATTTATAATTTCATTAG
GCCCCTTTATCATGACTCAAAAGCTATTTTCCCTATTTCTCGGTGCTGTG
TCCGTGGAAAACACCAATCAGTGTAGCAAGAGATTACTTAATTATTAAGA
TTTGGTGTTTTAACTTCGATTTTTTTTTAATTTTATCTAATGGACCTTTT
ACAACCTTCCTTTTGGCTATTTTCCCTTTTCCTAGGTTTCGCATGGCAGG
ATATGCAGTCTCATACTAATTTTTGGTAATAGATTTTAAGAAGTCTGGTG
TCTAATTCGTGTTTTTTTTGTTTTAGCTAATGAGCTTTTACCACCTTTCG
GTTACTGTGAAATCTGGTCATCAGCAAAAGACATTCGTGATACCCACGCC
AACAGACATAAAGTGATTTGCGAAATCTCACAACACGTTCTTTACCAATA
TACTTTTATTTTGTTATGGTTATTGATCGTCATTGGTATTTTGGTGTCCG
CTATTGGTTTGATTGTCAGCTTCTTTAAAGTGTTCTCAGCTTGTATGGGA
ATGAGGTATGTAGGTTGAATCATTGCATTTAAGGGCTAGACCCCGAAGGG
ATAGAGTAGAATCTCTAACCTTTCTCAGACAAGAGAAAGTGGAGCCACTT
ATTTCCCATTCAGTAAGGCACCTAGAACGCGCCGCAGCGGATTTTTTTCC
GTCAACGAACGAAGACCTACGCTAGCGGCCGAATACCTTTAAAACTTTAA
TGCGTGGTTTTCCAGCGGTCGAAGACCTACAAATTTAATGTGCGATCAGT
TTTCAGCGCCAGAAGACCTACACAAACGGCCGAAGACCTGCAAAACTTAG
AAATTTGAGAATCTAAATCTGAGCCAGCGGACGAATACCTTTCTTTGCTG
CATGAAAGTTTTTCGCACCAAACTGCCATTCAAGCAATAAATTTTTAATA
TTTCGTGAAATAAATTCTTTTCGTGATAAGTCACATGACAACATAATGGT
ACTCGGTAGCACATTTCCTACGAAATTCACCTAGAAACTCAGCATATGCT
TGCTTGTGATGGAGTCATACCAGATTTGAATAGCTTTTTGATATAATTTT
GCGTTTCCTCTGAAATCAATTTAAAGCTTAAAGCATGAAGAGAATTCACG
GGGTGATTGTGTTTATGCTCTATATCTATGGTACNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTAGCGTAGGTCTTCGGCCGCTGGAAAACCGCACATT
AAAGTTTTAAAGGTATTCGGCCGCTAGCGTAGGTCTTCGTTCGTTGACGG
AAAAAAAATCCGCCGCGCCGCAGTCATGACAACGGATTGTATCTAGCGGT
TCCATTGTTTTTGAGGACTGCATTTTTTTAAATCTAGCAATAGATTTTAG
TTTCAATCCAGTGTTTGTGTAAAAACCACACACGGGCGTTCTGGATGGGA
AATAAGTGGTTTCATTTCCCAGCAAGGACTCTCGAGTCTAGCCCTTCGGG
CTTGGAAGTCAATGGGTGGAATGCACCAAATTAAATATTTTTACGCGTTG
GTTAGTTAAGCTGTCTATGACCTAGACTAGAGACTACTCCTGGCTTAGAC
GATGTTATTGTCCATTACAGTGATAATAAAGGCGGGGAGATATACGCACG
GAGTTTAAAATCGGTGGTAAAGTTTTGAAGAAACGACTGGTAAACTTCAT
CGGCTGTAAACTCTTTTTGACAAAAAAAACCCGTTTGCGAATTTTCTTCG
GCTTTGGGCTTATTTTCTTAGATAATGATTTGTCTTAGACTATAGCATAG
TCTTCTCCACGCTGAACACGCCCCTTATTTTCATATGATATTCTTATAAA
ATCTGACCCTTTCAAAAACATTTCTTAATCCTATTCTTACCATCCAAAAG
CAACCTAGATTCCAAAGCAAAAGCTCCAAATTAAGAACTACCATTTTCTA
CCGGACCATTTAATCACCATTCAGTCTATCAAAATCCCTTAAGAGAACCC
TGGAATATCTAAGGCTTTGAGACAGCCTTCTAAAATCTGTGTCAAGAAGG
ACTCTTCTTCACTTTCTTGAACAAATTTTGGAAAAGAAATTGATGCGAAA
TATAAGCCCGTTCAAATATCTTTCCAACGGTACCAAACTTTTCATTTATA
CGACAATTATTTGGAAATTTATGGCCAAAAATGTTCTTGCTCTGATAAAG
AAATGCATTTCTTATTCAAGCCCTCGTATTTGTAGAAGATCTTTTGGTTA
AAATCTGTTGTTGTATTGAGCACTAGGTCAGGCATGAATTTCATCAAAAA
CTTTTCTAATTTACAGGCAAATTGGATTGACTCCAGAATCGAAGAAGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000135XLOC_000135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000248-exon-sc0000001-1575043694:2269321..2269520TCONS_00000248-exon-sc0000001-1575043694:2269321..2269520Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2268473..2268708TCONS_00000248-exon-sc0000001-1575043694:2268473..2268708Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2266951..2267116TCONS_00000248-exon-sc0000001-1575043694:2266951..2267116Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2265655..2265870TCONS_00000248-exon-sc0000001-1575043694:2265655..2265870Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2264966..2265194TCONS_00000248-exon-sc0000001-1575043694:2264966..2265194Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1575043694:2262421..2262454TCONS_00000248-exon-sc0000001-1575043694:2262421..2262454Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2269321..2269520TCONS_00000248-exon-sc0000001-1510915933:2269321..2269520Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2268473..2268708TCONS_00000248-exon-sc0000001-1510915933:2268473..2268708Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2266951..2267116TCONS_00000248-exon-sc0000001-1510915933:2266951..2267116Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2265655..2265870TCONS_00000248-exon-sc0000001-1510915933:2265655..2265870Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2264966..2265194TCONS_00000248-exon-sc0000001-1510915933:2264966..2265194Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1510915933:2262421..2262454TCONS_00000248-exon-sc0000001-1510915933:2262421..2262454Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2269321..2269520TCONS_00000248-exon-sc0000001-1491911889:2269321..2269520Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2268473..2268708TCONS_00000248-exon-sc0000001-1491911889:2268473..2268708Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2266951..2267116TCONS_00000248-exon-sc0000001-1491911889:2266951..2267116Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2265655..2265870TCONS_00000248-exon-sc0000001-1491911889:2265655..2265870Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2264966..2265194TCONS_00000248-exon-sc0000001-1491911889:2264966..2265194Clytia hemisphaericaexon
TCONS_00000248-exon-sc0000001-1491911889:2262421..2262454TCONS_00000248-exon-sc0000001-1491911889:2262421..2262454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2262421..2269520 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.5348	46.0881	66.6735	53.028	0.274333	0.0177672	0	0.674877	2.04524	7.29926	2.7567	2.16776	20.6681	6.96936	20.5145	24.2306	1.42081	2.73993	12.8041	28.2686	1.90205	2.14607	28.4947	26.9309	10.7047	13.5291	26.5966	27.5668	22.3859	20.8763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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