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TCONS_00000246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000246
Unique NameTCONS_00000246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1061

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000246 ID=TCONS_00000246|Name=TCONS_00000246|organism=Clytia hemisphaerica|type=transcript|length=1061bp
TACTGAGAGTTTGTATGCTATGAGAGgtcattataaaaaagatgTAAATC
ACACAGTAGTATAACACTAAATTTCAGGAaattataataataacaaatcA
TGAAGTAACAATTTCATCAACGAAGACCTACACTATGGAAGGGGAGAATA
GCCAAATGGATGATCGATCAATGATGTTTTCTAAAGATGGCAAATCTTCT
GAAATGACTATCCCTGAAAGAATAGttctttCTGCTGGTTATGATGGTGA
TGATCACAACGAACCATCCAGAAGTCCATTCCGGAATGGCGCACCCAATT
TTGATGACACACCTATTGTCAATCCTGAGGATGTACTTGGAGGCATGAAA
ACTCCACCGTCTGTTTTGACTATTGACCATGGTCCAAATACATTTGGTAC
ACCAAATTGGCATACAGAGGGCGATGGAGCTGATGATTCAGAGTCTgaca
agaaaaattacaaatacaAATTCAACCGTGCTCCTACCGATGACCAAGAC
GATGATTTTAGTTATGGTAGTGTACCTGCTGAACGATCGGTTGTCATTGC
TGGTCAGGAGGACTACCTTCATCACCACGTGCCATTTGACGATCCCAGGG
CCATGCAACAATGGTATACAAGCATGCAACGCAGGCTTACCATCTTAGAA
AATGAACAAGATTATCAAAATAGATTGTCAAatgtttggaaatatttttt
gttgactTTGACAGTTGTGAACCCGTTTATAATCAattatttcttcttta
aaaGACGTTGAACCATTGTGTTTTTGTTCAGCTGTTTACACTCTATGCAT
ATGCACGATATTACTTCAAACCTGCTTTGACCCAATCAAATTTTACCAGA
CTCATTGATTCACTATAGCATCATCCTGCGGCGTTCTAGCTTTTTCATCA
AGGCTTGAAATCGgaatttctggaaatttgatGTTGATGGATGTTTAAGT
CTTTGTTTTCCCATCTTGGCAACTTCTTGTTcttgaattgaaaattgata
TGGATGAGTAAATTTTAATTGCAGATTTAGTgtttattaaattaaaattt
gaagtttATTA
Run BLAST on NCBI

protein sequence of TCONS_00000246-protein

>TCONS_00000246-protein ID=TCONS_00000246-protein|Name=TCONS_00000246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MEGENSQMDDRSMMFSKDGKSSEMTIPERIVLSAGYDGDDHNEPSRSPFR
NGAPNFDDTPIVNPEDVLGGMKTPPSVLTIDHGPNTFGTPNWHTEGDGAD
DSESDKKNYKYKFNRAPTDDQDDDFSYGSVPAERSVVIAGQEDYLHHHVP
FDDPRAMQQWYTSMQRRLTILENEQDYQNRLSNVWKYFLLTLTVVNPFII
NYFFFKRR
Run BLAST on NCBI

transcript from alignment at sc0000001:2182870..2184959-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000246 ID=TCONS_00000246|Name=TCONS_00000246|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at sc0000001:2182870..2184959- (Clytia hemisphaerica)
TACTGAGAGTTTGTATGCTATGAGAGGTCATTATAAAAAAGATGTAAATC ACACAGTAGTATAACACTAAATTTCAGGAAATTATAATAATAACAAATCA TGAAGTAACAATTTCATCAACGAAGACCTACACTATGGAAGGGGAGAATA GCCAAATGGATGATCGATCAATGATGTTTTCTAAAGATGGCAAATCTTCT GAAATGACTATCCCTGAAAGAATAGGTAATTTATTTTCGATTTGTTACTT TACAGGGAATTAAAAATAAAATCAAAAACTTGAGACAATAACAAGACTAC TTGGGGAAGTTGATAAAATCTCAGACATCATATCGTTTTGTAATGTAATG ACACCCAAAAAACCTAAAAATCTTTTTAGTGTCATGTGACACTAGAGTTG AGTAGAATACCAAAAAGGTGGGATCCAGAAAAAAATTTACAAAATGTTTT TGTATGTTTGCACTAAAATTTTACTTTTTGAATCTTCTCCAGAATTTTTC TTAATTTTTCATAAAAAGGTTTTTAAAATTTTTGTATTTGAAGAAAATTT TGTCACGATGCTCCCAAAAATTAAAATATCACTACTCTAAAATTGGGTGT GGTGGTAGACGAAAAAACCCTTTTAGTACATGTATATCTGAGATTTCAGT AACCCCCCCCCCCCCCTGAGACTGCCAAAATGTTCATACAAGTTGTTGAG TTTTCTTTTTTTTTTTTTCAAGTTCTTTCTGCTGGTTATGATGGTGATGA TCACAACGAACCATCCAGAAGTCCATTCCGGAATGGCGCACCCAATTTTG ATGACACACCTATTGTCAATCCTGAGGATGTACTTGGAGGCATGAAAACT CCACCGTCTGTTTTGACTATTGACCATGGTCCAAATACATTTGGGTAACA TTAATGTTTTTAGGGGCAGAGTGAGAGGTGGTAGTCTGTACCAAGGCTCA AAATAACAATCGTATCAAGGCTCAAAATATGATTTTAATCAATATGTAAC AGACAATTGAAATTTAGATCTTTTGGGCCGAGAGCTGCCGAGAGAGTTCA ATTGTTTAGAGATAATTATTTATTTTAGGGATATATCCTAATTTCTAGTT CTGTCGACTTAAAAACTGTTTATTGTTTGTTTCTAGAAGTATTAATCTCT TGCCTCTGCTTGCCTTGGGTTACAAATTCTTTTACATACATTTTGTTTTT TAGTGCCTGATAATACATTAATCATGAATATACTTCACATTTATGGCTTT TAGGATTTTTGTCCTATCCAAGAAATATCGAGAACTGATGGGTGACCTTT TGCCTTATGTTTGTGTGAAGCAAGAGCAGCTAAAATGTTTTACTTGAAAA AGAGATTGGAAGAAGCCATTTAGACTAGTCAAATTGTTTTATTTTCATCC AATTTTGCTCTCTACAAATTTTTCAGTACACCAAATTGGCATACAGAGGG CGATGGAGCTGATGATTCAGAGTCTGACAAGAAAAATTACAAATACAAAT TCAACCGTGCTCCTACCGATGACCAAGACGATGATTTTAGTTATGGTAGT GTACCTGCTGAACGATCGGTTGTCATTGCTGGTCAGGAGGACTACCTTCA TCACCACGTGCCATTTGACGATCCCAGGGCCATGCAACAATGGTATACAA GCATGCAACGCAGGCTTACCATCTTAGAAAATGAACAAGATTATCAAAAT AGATTGTCAAATGTTTGGAAATATTTTTTGTTGACTTTGACAGTTGTGAA CCCGTTTATAATCAATTATTTCTTCTTTAAAAGACGTTGAACCATTGTGT TTTTGTTCAGCTGTTTACACTCTATGCATATGCACGATATTACTTCAAAC CTGCTTTGACCCAATCAAATTTTACCAGACTCATTGATTCACTATAGCAT CATCCTGCGGCGTTCTAGCTTTTTCATCAAGGCTTGAAATCGGAATTTCT GGAAATTTGATGTTGATGGATGTTTAAGTCTTTGTTTTCCCATCTTGGCA ACTTCTTGTTCTTGAATTGAAAATTGATATGGATGAGTAAATTTTAATTG CAGATTTAGTGTTTATTAAATTAAAATTTGAAGTTTATTA

Coding sequence (CDS) from alignment at sc0000001:2182870..2184959-

>TCONS_00000246 ID=TCONS_00000246|Name=TCONS_00000246|organism=Clytia hemisphaerica|type=CDS|length=1881bp|location=Sequence derived from alignment at sc0000001:2182870..2184959- (Clytia hemisphaerica)
TACACCAAATTGGCATACAGAGGGCGATGGAGCTGATGATTCAGAGTCTG
ACAAGAAAAATTACAAATACAAATTCAACCGTGCTCCTACCGATGACCAA
GACGATGATTTTAGTTATGGTAGTGTACCTGCTGAACGATCGGTTGTCAT
TGCTGGTCAGGAGGACTACCTTCATCACCACGTGCCATTTGACGATCCCA
GGGCCATGCAACAATGGTATACAAGCATGCAACGCAGGCTTACCATCTTA
GAAAATGAACAAGATTATCAAAATAGATTGTCAAATGTTTGGAAATATTT
TTTGTTGACTTTGACAGTTGTGAACCCGTTTATAATCAATTATTTCTTCT
TTAAAAGACGTTGATTCTTTCTGCTGGTTATGATGGTGATGATCACAACG
AACCATCCAGAAGTCCATTCCGGAATGGCGCACCCAATTTTGATGACACA
CCTATTGTCAATCCTGAGGATGTACTTGGAGGCATGAAAACTCCACCGTC
TGTTTTGACTATTGACCATGGTCCAAATACATTTGGATGGAAGGGGAGAA
TAGCCAAATGGATGATCGATCAATGATGTTTTCTAAAGATGGCAAATCTT
CTGAAATGACTATCCCTGAAAGAATAGTACACCAAATTGGCATACAGAGG
GCGATGGAGCTGATGATTCAGAGTCTGACAAGAAAAATTACAAATACAAA
TTCAACCGTGCTCCTACCGATGACCAAGACGATGATTTTAGTTATGGTAG
TGTACCTGCTGAACGATCGGTTGTCATTGCTGGTCAGGAGGACTACCTTC
ATCACCACGTGCCATTTGACGATCCCAGGGCCATGCAACAATGGTATACA
AGCATGCAACGCAGGCTTACCATCTTAGAAAATGAACAAGATTATCAAAA
TAGATTGTCAAATGTTTGGAAATATTTTTTGTTGACTTTGACAGTTGTGA
ACCCGTTTATAATCAATTATTTCTTCTTTAAAAGACGTTGATTCTTTCTG
CTGGTTATGATGGTGATGATCACAACGAACCATCCAGAAGTCCATTCCGG
AATGGCGCACCCAATTTTGATGACACACCTATTGTCAATCCTGAGGATGT
ACTTGGAGGCATGAAAACTCCACCGTCTGTTTTGACTATTGACCATGGTC
CAAATACATTTGGATGGAAGGGGAGAATAGCCAAATGGATGATCGATCAA
TGATGTTTTCTAAAGATGGCAAATCTTCTGAAATGACTATCCCTGAAAGA
ATAGTACACCAAATTGGCATACAGAGGGCGATGGAGCTGATGATTCAGAG
TCTGACAAGAAAAATTACAAATACAAATTCAACCGTGCTCCTACCGATGA
CCAAGACGATGATTTTAGTTATGGTAGTGTACCTGCTGAACGATCGGTTG
TCATTGCTGGTCAGGAGGACTACCTTCATCACCACGTGCCATTTGACGAT
CCCAGGGCCATGCAACAATGGTATACAAGCATGCAACGCAGGCTTACCAT
CTTAGAAAATGAACAAGATTATCAAAATAGATTGTCAAATGTTTGGAAAT
ATTTTTTGTTGACTTTGACAGTTGTGAACCCGTTTATAATCAATTATTTC
TTCTTTAAAAGACGTTGATTCTTTCTGCTGGTTATGATGGTGATGATCAC
AACGAACCATCCAGAAGTCCATTCCGGAATGGCGCACCCAATTTTGATGA
CACACCTATTGTCAATCCTGAGGATGTACTTGGAGGCATGAAAACTCCAC
CGTCTGTTTTGACTATTGACCATGGTCCAAATACATTTGGATGGAAGGGG
AGAATAGCCAAATGGATGATCGATCAATGATGTTTTCTAAAGATGGCAAA
TCTTCTGAAATGACTATCCCTGAAAGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000134XLOC_000134Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000246-proteinTCONS_00000246-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000246-exon-sc0000001-1575043694:2184735..2184959TCONS_00000246-exon-sc0000001-1575043694:2184735..2184959Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1575043694:2184066..2184237TCONS_00000246-exon-sc0000001-1575043694:2184066..2184237Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1575043694:2182870..2183533TCONS_00000246-exon-sc0000001-1575043694:2182870..2183533Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1510915933:2184735..2184959TCONS_00000246-exon-sc0000001-1510915933:2184735..2184959Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1510915933:2184066..2184237TCONS_00000246-exon-sc0000001-1510915933:2184066..2184237Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1510915933:2182870..2183533TCONS_00000246-exon-sc0000001-1510915933:2182870..2183533Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1491911889:2184735..2184959TCONS_00000246-exon-sc0000001-1491911889:2184735..2184959Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1491911889:2184066..2184237TCONS_00000246-exon-sc0000001-1491911889:2184066..2184237Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1491911889:2182870..2183533TCONS_00000246-exon-sc0000001-1491911889:2182870..2183533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2182870..2184959 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
157.151 153.775 242.527 254.572 37.792 27.4232 54.9809 57.6372 68.9161 70.3686 59.8218 48.7812 45.9994 41.1848 52.4443 55.9509 74.5537 68.5974 39.5285 55.306 46.0177 44.4792 76.9159 72.3585 49.1337 46.6038 51.5019 43.2036 53.4277 54.1519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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