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TCONS_00000244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000244
Unique NameTCONS_00000244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000244 ID=TCONS_00000244|Name=TCONS_00000244|organism=Clytia hemisphaerica|type=transcript|length=1173bp
AGAAAGCAATCGAAGACCCCCGTCGTCCGCTGCGCTCTGCATTGCAGTCA
AGAAAGGCCAGgactCAGAAGAAAGTGAAGATTGGCGTGCAGTTTTTGGG
TCTAATGGTGGTTTAAAGGGGCTTGCTGCTCTAACACAAGtGATGACTGA
TGTATTTGTATCTGGTATGGATGTCAGCAAATCCACTTTGGACAAAGCTC
GTTTGTTTTACGATATCATTTCTGGTGATCTCTACTATGAAGGTAGTAAG
GGTTCCagtggaaaaattcaaaaacaagcATCAGAGCTGAGTAAATATTT
TGGACCTGCAGTGAAAGAAATGAGCGAACCACTAGGCTATGTTTCAATGG
CTTCTAAAGgcgagagaaaaggaaaatcacTTGTGGACCCTCGTTCCAAT
TGATGAGTGTTTATCATAAACCTATATTGGTTTAATGGGACAAGTTGGAG
TTTTTACATTCTTttaacgcgtcatctctattactttaaatgatcaataa
atgaaatgtcttataaaaactccagttcattccattttaaatatttttta
agtacAAATTTAAAAGGTATGAGATTATTGTGAAATTCCaataaggcgaa
aataaaaaaatgtagtgtttccgggatgcgggtgaaggaaaaaaagctct
catgcggccggccggaaataattttttttttgctattttggataacttaa
gatcattgaaatagaactttaaagatatcttttatgtacaaacggtatca
agtaagccctgaatactaatgtatcaactactaacgaagtctgcggccgg
gtcagaaaattatttttttcactacgtttttttattttcgcctaatcACA
ATACACTTTAGTTGTTTACtgagcttttccagaaaaacatTATGTACCTC
CAATGTTTAGCTTTTTTGTGCTCtgttaaaagttttcaaagacATTAATT
TTCGCGAAGATGGGCGAAAATCAGGAAAGTTTTTATTTgcgaaaaataaa
tattttacaattACCTCTCTGGAGTTCCAAACTGTTACAATACTCTAAAC
ATAATCCTGacagaaatttgattttgtatttatcCCTATGGAAATTCCTC
AACATTACTGTAATTCCATTGAGAAAGAATGGGTTTTTTCTTtgctaagg
cgagaccaatttgattagttgtt
Run BLAST on NCBI

protein sequence of TCONS_00000244-protein

>TCONS_00000244-protein ID=TCONS_00000244-protein|Name=TCONS_00000244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
ESNRRPPSSAALCIAVKKGQDSEESEDWRAVFGSNGGLKGLAALTQVMTD
VFVSGMDVSKSTLDKARLFYDIISGDLYYEGSKGSSGKIQKQASELSKYF
GPAVKEMSEPLGYVSMASKGERKGKSLVDPRSN
Run BLAST on NCBI

transcript from alignment at sc0000001:2163030..2166411-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000244 ID=TCONS_00000244|Name=TCONS_00000244|organism=Clytia hemisphaerica|type=transcript|length=3382bp|location=Sequence derived from alignment at sc0000001:2163030..2166411- (Clytia hemisphaerica)
AGAAAGCAATCGAAGACCCCCGTCGTCCGCTGCGCTCTGCATTGCAGTCA AGAAAGGCCAGGTTTGATATTTTGTAAAAAATCCTTTGGTAATTTAAATG ATTTGACAAGCTTTAGTTTTACGTAAGGTATCATTTTGAAAGACTGAGAA TTTATTGCATTCCTCACGTAATGTTTTCTACAGAAATACCCAGTGGCAAA TTTAAGCTACTGGCAGAGTTGTTTCTGTAAAAAAACATTACGTCATGATA TCATGAATTTGCACAGCTCGTCTGGATGGTAATTCATGATATTCATGACG TAATGTTTTCTACGGAAATACCCCGGTTTTTGCCAGTAGTGGCAAATTTT ATACAACTTTTGTCTAAAGATTTGTTTGTGATTGATGCTGCAGAGTGCTC AATGAAATCGAGCCAATTTAAATTTTAAAAGTTATCTTTCATCATAAACA ACATGTCTAATTGATATTTGCCATTACTGGCTAAAACCCGGGTATTTCCG TAGAAAACATTATGTCATGAATATCAGAATTTTTGATCGATATATTGAAA TAGATTGAGAATAAAAATCTCTCCTTTTGTTTATTTTAATTGCTGATTTG TTAATTTCTATCTTTCAAAGGACTCAGAAGAAAGTGAAGATTGGCGTGCA GTTTTTGGGTCTAATGGTGGTTTAAAGGGGCTTGCTGCTCTAACACAAGG TAAATTTTCTGTATTACCAGTGAGCAAACACATTTTTGAATAAGAGATAC GAAGATGCAAAATAATATTCATCAACACTGACAGCAAGAAATCGTAAAAT CCTTGTCACCTCATGGTTTTTTGACACTTTTAAATACCGTCATTTTCTTT CTTCAAACAACGAAACATCGACGAGAAAAAGGGCGAAATACCGTCAAGCC ATCAAACCCGTACGCCTCCCCCCCCCCTTACGATATCTTTTTATATGAAA TGTAAGTGAAATCGAAGTCTGAATCTTCGGATTACCTTACTAAACCAGAA AGTAAACTCGGATCAGTATCAGTCACTTTCTCTGAAAGGCTTGTCGCCCA TTGGCCCTGTAATGTCAATCTGATCCGTAAACTCTATTTCATTCATTCAA ATATTTTTTACAGTGATGACTGATGTATTTGTATCTGGTATGGATGTCAG CAAATCCACTTTGGACAAAGCTCGTTTGTTTTACGATATCATTTCTGGTG ATCTCTACTATGAAGGTTTCTCTTCTTTCTCCTAGTTTGAGTAGAGAAAA GGAGTTAAGTTAATTTCATACTCAAAGTCTCATGGCATAGAGGATGGAAA TCTTCAGTAACGTCTTTTGTCTTTTTCCATTACACTCACGATAGACCCTG GGTATTATCTTGCTCGCGGCTGATAACCAGATAGTCTTAGCGATGCAGTT GATTCTCGCTAATTCAAACTCGAACGGGGATTCCTTTTTGTTCGAATTAC AGAGAGATTCGAATTATAGAAAGAATTTTAAGAGCGAGGCTCTTTCTGTA TCTTATGCCCAGCTGGCACACAACGTTGTTTCAACGTTCATCTAACGTTA TATGGACGTTGTGAACGTTAAATAAACGTTGAAACAACGTTGTGTGCCAG CTGGGTGTTCAAAAGGTGTTTTGCCAACACGTAAATATGTGCGCATTGAC CTTATTTTGAGAGCAAACTACTCAATTAAGGACTAATGTGAGATTCGAAC TCACGACTTTCGTATTACTTGTGTAGCTGCTCTACCGACTAAGCTATCTA CGTCCACATTGGAAACATGGAATAGCGTCAGGTTTTATTAGCGAGTTTAT GTTTTTGCTTCTAAAGTGAGGACGGTAAATTGACTCAAGCAGTTTGGAAA AAGCTGCAGTTCTGACCCGCTAAATCGAGATCGGTATGATTGCTGATTTA CCGTCGTCCTCAGTGAGTCAGGATCTAGCTAAATTAGAACCTTACCGTCT CCGTCGCTGAAAATCACACAAACTCGGTATTAGTCTTAGTCCTGCACTAA TTAAAAATTGTAGCGAATTTATTTTAACGTTTTTAATCGTCCTGCTAAGG TAAATCCAATCGTATCATCGGGTAATCGTATCAGGTCTGTTCCAAAGAAT TGCTTTGAAATTCCCCCTCAAAAGTAATATCTCGTTGGAAAGATAATTTT CATCTTGATTGATGTAAACTTTGAAGAATCTTCTAAACATTTGAAAATGT AAATGTAAAATGAAGATGAAAAAATAAAGATGAAAAAAAGTGAAGATTTT TTCCACTTGATCAAAACCTTTTTATTGTTTACTTTAAACCTCGCTGATTT CAAATGTACCCCAGATTTTTTTATAATGTTTGTTTGGATCAAAGGTTATA CCCCTCGACTATTTTTTTATTAATTTATCGCCAATGCAGACCTTTTAAGA TATAGCCGTTTCAAATAATTTCGTTAAGAAATCTATTCTCGTGTTTTTCA GGTAGTAAGGGTTCCAGTGGAAAAATTCAAAAACAAGCATCAGAGCTGAG TAAATATTTTGGACCTGCAGTGAAAGAAATGAGCGAACCACTAGGCTATG TTTCAATGGCTTCTAAAGGCGAGAGAAAAGGAAAATCACTTGTGGACCCT CGTTCCAATTGATGAGTGTTTATCATAAACCTATATTGGTTTAATGGGAC AAGTTGGAGTTTTTACATTCTTTTAACGCGTCATCTCTATTACTTTAAAT GATCAATAAATGAAATGTCTTATAAAAACTCCAGTTCATTCCATTTTAAA TATTTTTTAAGTACAAATTTAAAAGGTATGAGATTATTGTGAAATTCCAA TAAGGCGAAAATAAAAAAATGTAGTGTTTCCGGGATGCGGGTGAAGGAAA AAAAGCTCTCATGCGGCCGGCCGGAAATAATTTTTTTTTTGCTATTTTGG ATAACTTAAGATCATTGAAATAGAACTTTAAAGATATCTTTTATGTACAA ACGGTATCAAGTAAGCCCTGAATACTAATGTATCAACTACTAACGAAGTC TGCGGCCGGGTCAGAAAATTATTTTTTTCACTACGTTTTTTTATTTTCGC CTAATCACAATACACTTTAGTTGTTTACTGAGCTTTTCCAGAAAAACATT ATGTACCTCCAATGTTTAGCTTTTTTGTGCTCTGTTAAAAGTTTTCAAAG ACATTAATTTTCGCGAAGATGGGCGAAAATCAGGAAAGTTTTTATTTGCG AAAAATAAATATTTTACAATTACCTCTCTGGAGTTCCAAACTGTTACAAT ACTCTAAACATAATCCTGACAGAAATTTGATTTTGTATTTATCCCTATGG AAATTCCTCAACATTACTGTAATTCCATTGAGAAAGAATGGGTTTTTTCT TTGCTAAGGCGAGACCAATTTGATTAGTTGTT

Coding sequence (CDS) from alignment at sc0000001:2163030..2166411-

>TCONS_00000244 ID=TCONS_00000244|Name=TCONS_00000244|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0000001:2163030..2166411- (Clytia hemisphaerica)
GTAGTAAGGGTTCCAGTGGAAAAATTCAAAAACAAGCATCAGAGCTGAGT
AAATATTTTGGACCTGCAGTGAAAGAAATGAGCGAACCACTAGGCTATGT
TTCAATGGCTTCTAAAGGCGAGAGAAAAGGAAAATCACTTGTGGACCCTC
GTTCCAATTGATGATGACTGATGTATTTGTATCTGGTATGGATGTCAGCA
AATCCACTTTGGACAAAGCTCGTTTGTTTTACGATATCATTTCTGGTGAT
CTCTACTATGAAGGACTCAGAAGAAAGTGAAGATTGGCGTGCAGTTTTTG
GGTCTAATGGTGGTTTAAAGGGGCTTGCTGCTCTAACACAAGGAAAGCAA
TCGAAGACCCCCGTCGTCCGCTGCGCTCTGCATTGCAGTCAAGAAAGGCC
AGGTAGTAAGGGTTCCAGTGGAAAAATTCAAAAACAAGCATCAGAGCTGA
GTAAATATTTTGGACCTGCAGTGAAAGAAATGAGCGAACCACTAGGCTAT
GTTTCAATGGCTTCTAAAGGCGAGAGAAAAGGAAAATCACTTGTGGACCC
TCGTTCCAATTGATGATGACTGATGTATTTGTATCTGGTATGGATGTCAG
CAAATCCACTTTGGACAAAGCTCGTTTGTTTTACGATATCATTTCTGGTG
ATCTCTACTATGAAGGACTCAGAAGAAAGTGAAGATTGGCGTGCAGTTTT
TGGGTCTAATGGTGGTTTAAAGGGGCTTGCTGCTCTAACACAAGGAAAGC
AATCGAAGACCCCCGTCGTCCGCTGCGCTCTGCATTGCAGTCAAGAAAGG
CCAGGTAGTAAGGGTTCCAGTGGAAAAATTCAAAAACAAGCATCAGAGCT
GAGTAAATATTTTGGACCTGCAGTGAAAGAAATGAGCGAACCACTAGGCT
ATGTTTCAATGGCTTCTAAAGGCGAGAGAAAAGGAAAATCACTTGTGGAC
CCTCGTTCCAATTGATGATGACTGATGTATTTGTATCTGGTATGGATGTC
AGCAAATCCACTTTGGACAAAGCTCGTTTGTTTTACGATATCATTTCTGG
TGATCTCTACTATGAAGGACTCAGAAGAAAGTGAAGATTGGCGTGCAGTT
TTTGGGTCTAATGGTGGTTTAAAGGGGCTTGCTGCTCTAACACAAGGAAA
GCAATCGAAGACCCCCGTCGTCCGCTGCGCTCTGCATTGCAGTCAAGAAA
GGCCAGGTAGTAAGGGTTCCAGTGGAAAAATTCAAAAACAAGCATCAGAG
CTGAGTAAATATTTTGGACCTGCAGTGAAAGAAATGAGCGAACCACTAGG
CTATGTTTCAATGGCTTCTAAAGGCGAGAGAAAAGGAAAATCACTTGTGG
ACCCTCGTTCCAATTGATGATGACTGATGTATTTGTATCTGGTATGGATG
TCAGCAAATCCACTTTGGACAAAGCTCGTTTGTTTTACGATATCATTTCT
GGTGATCTCTACTATGAAGGACTCAGAAGAAAGTGAAGATTGGCGTGCAG
TTTTTGGGTCTAATGGTGGTTTAAAGGGGCTTGCTGCTCTAACACAAGGA
AAGCAATCGAAGACCCCCGTCGTCCGCTGCGCTCTGCATTGCAGTCAAGA
AAGGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000132XLOC_000132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000244-exon-sc0000001-1575043694:2166351..2166411TCONS_00000244-exon-sc0000001-1575043694:2166351..2166411Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1575043694:2165713..2165791TCONS_00000244-exon-sc0000001-1575043694:2165713..2165791Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1575043694:2165197..2165298TCONS_00000244-exon-sc0000001-1575043694:2165197..2165298Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1575043694:2163030..2163960TCONS_00000244-exon-sc0000001-1575043694:2163030..2163960Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1510915933:2166351..2166411TCONS_00000244-exon-sc0000001-1510915933:2166351..2166411Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1510915933:2165713..2165791TCONS_00000244-exon-sc0000001-1510915933:2165713..2165791Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1510915933:2165197..2165298TCONS_00000244-exon-sc0000001-1510915933:2165197..2165298Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1510915933:2163030..2163960TCONS_00000244-exon-sc0000001-1510915933:2163030..2163960Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1491911889:2166351..2166411TCONS_00000244-exon-sc0000001-1491911889:2166351..2166411Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1491911889:2165713..2165791TCONS_00000244-exon-sc0000001-1491911889:2165713..2165791Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1491911889:2165197..2165298TCONS_00000244-exon-sc0000001-1491911889:2165197..2165298Clytia hemisphaericaexon
TCONS_00000244-exon-sc0000001-1491911889:2163030..2163960TCONS_00000244-exon-sc0000001-1491911889:2163030..2163960Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000244-proteinTCONS_00000244-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2163030..2166411 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.36838 3.78941 3.3713 3.02124 11.3082 7.61974 7.59099 8.51389 8.37348 9.66272 7.09303 9.48787 5.74029 4.97173 5.99391 6.29104 8.67507 8.32396 4.06294 6.05788 6.39592 8.43154 5.65271 6.60748 4.06988 4.93706 9.90908 7.71882 2.81763 3.42347
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000101GGT_peptidase
Vocabulary: Biological Process
TermDefinition
GO:0006751glutathione catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0036374glutathione hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006751 glutathione catabolic process
molecular_function GO:0036374 glutathione hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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