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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000236 ID=TCONS_00000236|Name=TCONS_00000236|organism=Clytia hemisphaerica|type=transcript|length=2357bpRun BLAST on NCBI transcript from alignment at sc0000001:2036582..2050641- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000236 ID=TCONS_00000236|Name=TCONS_00000236|organism=Clytia hemisphaerica|type=transcript|length=14060bp|location=Sequence derived from alignment at sc0000001:2036582..2050641- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000236 vs. Swiss-Prot (Human)
Match: ATS20 (A disintegrin and metalloproteinase with thrombospondin motifs 20 OS=Homo sapiens GN=ADAMTS20 PE=2 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 1.720e-31 Identity = 157/585 (26.84%), Postives = 242/585 (41.37%), Query Frame = 2
Query: 5 GIQTRLLQCIREDDQSVVSSSSCEGLEGP-VTQQSCNANVCPALWYVTEWTKCSKLCGSGTKTRKLYCSRID-GTGQRITVDDSECTGE-KPEDVEFTSTCNVIACPAYYVYGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNADIPCPEWKIV-YSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKP-TVTDADSKACNEELCDPYVWREQDGVCSVTCGKGLLPITQVCFGRVEKKNVEESKC-PSPKPKDP-----TP----KECDAGACPETY-----SWKT-KFSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDC--PIKYSWNTEMSECSVTCGEGVKTASYKCVRSTDNAQVDDSKCEGIAKPNIANEKCVEAACPPTYS---------------------------------------WRKHNXXXXXXXXXXXXTQSGHCHRDEDGERMEESFCNVSQKPTTQTFSCHKEACKAPFYWKGNFGRCMATCGSGHKLKVLSCVERATGHVTENEKCKDAAIPDDE-QCTMEPC 1570
G+Q R + CI + D SVVS C+ L P QSCN + C W+V ++CS CG G +T ++C + GQ + VDD C + KP E C+ + Y EW+QCS SC GG+RSR S C ++ G + N C L + E CN + CP W +SEC TC G + V C + + C++S KP +++ + C P+ G C+ TCG G C + +E+++C + +P D TP + + P W+ ++ CSV+CG GT+ C +D+ ++E C +P + DC P + S CS +CG G T C+ + +D++ C+ +P + ++C AACPP +S WR S SG + +DE+G+ S+C+ + KP + C C P + GN+G C TCG G K +++ C + G + E+ C+ P QC M C
Sbjct: 865 GLQRRNITCIHKSDHSVVSDKECDHLPLPSFVTQSCNTD-CELRWHVIGKSECSSQCGQGYRTLDIHCMKYSIHEGQTVQVDDHYCGDQLKPPTQEL---CHGNCVFTRWHYSEWSQCSRSCGGGERSRESYC--MNNFGHRLADN--ECQELSR-VTRENCN-EFSCPSWAASEWSECLVTCGKGTKQRQVWCQ--LNVDHLSDGFCNSSTKPESLSPCELHTCASWQVGPW------GPCTTTCGHGYQMRDVKCVNELASAVLEDTECHEASRPSDRQSCVLTPCSFISKLETALLPTVLIKKMAQWRHGSWTPCSVSCGRGTQARYVSC-RDALDRIADESYCAHLPRPA------EIWDCFTPCGEWQAGDWSPCSASCGHGKTTRQVLCMNY--HQPIDENYCDPEVRP-LMEQECSLAACPPAHSHFPSSPVQPSYYLSTNLPLTQKLEDNENQVVHPSVRGNQWRTGPWGSCSSSCSGGLQHRAVVCQDENGQ--SASYCDAASKP-PELQQCGPGPC--PQWNYGNWGECSQTCGGGIKSRLVIC-QFPNGQILEDHNCEIVNKPPSVIQCHMHAC 1415 HSP 2 Score: 93.5893 bits (231), Expect = 2.620e-19 Identity = 169/682 (24.78%), Postives = 265/682 (38.86%), Query Frame = 2
Query: 5 GIQTRLLQCIREDDQSVVSSSSCEGLEGPVTQQSCNANVCPALWYVTEWTKCSKLCGSGTKTRKLYCSRIDGTGQRITVDDSECTGEKPEDVEFTSTCNVIACP-------------AYYV----------------------------YGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNADIPCPEWKI-VYSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKPTVTDADSKACNEELCDPYVWREQDGV-CSVTCGKGLLPITQVCFGRVEKKNVEESKCPSPKPKDPTPKECDAGACPETYSWKTK-FSECSVTCGTGTKTLEPYC-VKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKYSWNTEMSECSVTCGEGVKTASYKCVRSTDNA--QVDD----SKCEGIAKPNIANEKCVEAACPPTYSWRKHNXXXXXXXXXXXXTQ--SGHCHRDEDGERMEESFCNVSQKPTTQTFSCHKEACKAPFYWK-GNFGRCMATCGSGHKLKVLSCVERATGHVTENEKCKDAAIPD-DEQCTMEPCKPVFETDKMPPTYAV---GCYGDQPTPRRVPIYLENMKDIYDPANPLPMIQKCAEKAHSMGYVYFATQYFGECWAGDLNTAEQYYLNG-YTDRCENGIGKVAANF 1873
G Q R + C R+ + S C L P C W +W+ CS CG G TR++ C +D++ C E +E C++ ACP +YY+ G W CS+SC+GG + R+ +C+ E G+ + C P + C PCP+W + ECS+TC GGI++ V+C P+ D + +K P+V AC ++ W ++ CS +CGKG C + ++K +E++ C S K PT K C + CP SWK ++ECSVTCG+G + + YC +K Q E +CD + +P S +C DC CS +C + S++ + TDN QV++ S + N N C S +N S T+ S H+ + C V P++Q + C +C WK G + +C TCG G + + C+ T H ++ C + P ++C CK ++ + G Y R + IY +M + +P L ++Q + F E + L Q NG + CE G +AA +
Sbjct: 1171 GTQARYVSC-RDALDRIADESYCAHLPRPAEIWDCFTPC--GEWQAGDWSPCSASCGHGKTTRQVLC-----MNYHQPIDENYCDPEVRPLME--QECSLAACPPAHSHFPSSPVQPSYYLSTNLPLTQKLEDNENQVVHPSVRGNQWRTGPWGSCSSSCSGGLQHRAVVCQ--DENGQ----SASYCDAASKPPELQQCGPG-PCPQWNYGNWGECSQTCGGGIKSRLVICQFPNGQILEDHNCEIVNKPPSVIQCHMHACPADV----SWHQEPWTSCSASCGKGRKYREVFCIDQFQRK-LEDTNC-SQVQKPPTHKACRSVRCP---SWKANSWNECSVTCGSGVQQRDVYCRLKGVGQVV--EEMCDQSTRP-CSQRRCWSQDCVQHKGMERGRLNCSTSCE---RKDSHQRMECTDNQIRQVNEIVYNSSTISLTSKNCRNPPCNYIVVTADSSQCANNCGFSYRQRITYCTEIPSTKKHKLHRLRPIVYQECPVV--PSSQVYQC-INSCLHLATWKVGKWSKCSVTCGIGIMKRQVKCI---TKHGLSSDLCLNHLKPGAQKKCYANDCKSFTTCKEIQVKNHIRKDGDYYLNIKGRIIKIYCADMY-LENPKEYLTLVQ--------------GEENFSEVYGFRLKNPYQCPFNGSRREDCECDNGHLAAGY 1799 HSP 3 Score: 87.0409 bits (214), Expect = 2.715e-17 Identity = 121/457 (26.48%), Postives = 188/457 (41.14%), Query Frame = 2
Query: 329 YGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDP-LVSETCNADIPCPEWKIVYSECSKTCDGGIQTASVVCT----DPDSGTQVDASTCDASKKPTVTDADSKACNEELCDPYVWREQDGVCSVTCGKGLLPITQVCFGRVEKKNVEESKCPSPKPKDPTPKECDAGACPETYSW-KTKFSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKYSWNT-EMSECSVTCGEGVKTASYKCVRSTDNAQVDDSKCEGIAKPNIANEKCV----------EAACPPTY------SWRKHNXXXXXXXXXXXXTQSGHCH-RDEDGERMEESFCNVSQKPTTQTFSCHKEACKAPFYWKGNFGRCMATCGSGHKLKVLSCVERATGHVTENEKCKDAAIPDDEQ-CTMEPCKPV---FETDKMPPTYAV 1615
YG W C+ C G +R R+ C H S+ ++ + C +L P V+++CN D I SECS C G +T + C QVD C KP + C W + CS +CG G C + + +++C + T + C+ +CP SW +++SEC VTCG GTK + +C + D + C+ + KP S C L C SW C+ TCG G + KCV +A ++D++C ++P+ + CV E A PT WR H S S G TQ+ + RD +ES+C +P + + C + + G++ C A+CG G + + C+ + EN C P EQ C++ C P F + + P+Y +
Sbjct: 853 YGPWEGCTKMCQGLQR-RNITCIHKSDHS---VVSDKECDHLPLPSFVTQSCNTDCELRWHVIGKSECSSQCGQGYRTLDIHCMKYSIHEGQTVQVDDHYCGDQLKPPTQELCHGNCVFTRWHYSEWSQ----CSRSCGGGERSRESYCMNNFGHR-LADNEC--QELSRVTRENCNEFSCP---SWAASEWSECLVTCGKGTKQRQVWCQLNVDHLSDG--FCNSSTKP-ESLSPCELHTCA---SWQVGPWGPCTTTCGHGYQMRDVKCVNELASAVLEDTECHEASRPS-DRQSCVLTPCSFISKLETALLPTVLIKKMAQWR-HGSWTPCSVSCGRGTQARYVSCRDALDRIADESYCAHLPRP-AEIWDCFTPCGE---WQAGDWSPCSASCGHGKTTRQVLCMNYHQP-IDEN-YCDPEVRPLMEQECSLAACPPAHSHFPSSPVQPSYYL 1281 The following BLAST results are available for this feature:
BLAST of TCONS_00000236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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