TCONS_00000235 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000235
Unique Name	TCONS_00000235
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2357

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000001:2036582..2050641-

transcript sequence

>TCONS_00000235 ID=TCONS_00000235|Name=TCONS_00000235|organism=Clytia hemisphaerica|type=transcript|length=2357bp
TACAGGTATTCAAACACGGCTCTTACAATGTATTCGTGAAGACGATCAAA
GTGTGGTCAGTTCCTCATCATGCGAAGGTTTAGAGGGACCTGTAACGCAA
CAATCATGTAATGCTAATGTTTGCCCCGCATTATGGTACGTCACCGAATG
GACCAAATGTTCGAAACTTTGTGGAAGTGGTACAAAGACAAGGAAACTTT
ATTGTTCACGTATCGACGGAACGGGACAACGTATCACAGTTGACGATAGC
GAATGTACGGGTGAAAAACCGGAAGACGTAGAGTTTACGTCAACATGTAA
CGTTATTGCGTGTCCTGCGTATTACGTTTACGGAGAATGGACCCAGTGTT
CTGCTTCATGCAACGGTGGAAAACGCAGTCGATCATCGATCTGTAAACAT
ATCAGTGAAGTTGGAAAACTTGTTACAATCAATGTACAAGCTTGTCTATA
TCTTGGTGATCCTTTGGTCTCTGAAACATGTAATGCTGATATTCCATGTC
CTGAATGGAAGATTGTATACTCCGAATGCTCCAAAACTTGCGATGGAGgt
ATTCAAACAGCATCTGTTGTTTGTACTGACCCCGATTCAGGAACTCAAGT
GGATGCTTCAACGTGTGATGCTTCGAAAAAACCTACGGTAACCGATGCGG
ATAGTAAAGCTTGCAACGAAGAATTATGTGATCCTTATGTCTGGAGAGAA
CAAGATGGTGTTTGTAGCGTGACCTGCGGAAAAGGTCTTTTGCCAATTAC
ACAAGTCTGTTTCGGACgtgttgaaaagaaaaatgtcgAAGAATCAAAAT
GTCCGTCGCCTAAACCTAAAGATCCGACACCGAAAGAATGTGATGCAGGC
GCATGTCCAGAAACATATTCATGGAAAACCAAATTCAGTGAATGTAGTGT
TACTTGTGGCACAGGTACCAAAACTCTAGAACCTTATTGCGTCAAAGATT
CCGATCAAAGTACATCGAACGAGGTGTTGTGCGATCCAGCAAAGAAACCT
GGCACTAGTACCGAACAATGTGCGCTTGGTGATTGTCCAATCAAATATTC
TTGGAACACGGAGATGAGTGAATGCAGTGTAACGTGTGGTGAAGGTGTGA
AAACGGCGTCGTACAAATGCGTCCGCAGTACAGATAACGCTCAAGTGGAT
GACAGTAAATGCGAAGGAATCGCAAAACCAAATATTGCTAATGAGAAATG
TGTTGAAGCTGCCTGTCCACCTACTTACTCTTGGAGAAAACATAATTCGT
CCTGCAGCGTCTCTTGTGGATCAGGAATCATTACTCAATCTGGTCATTGC
CACCGAGACGAAGATGGCGAGAGAATGGAAGAATCCTTCTGTAATGTTTC
ACAAAAACCAACAACACAGACTTTCTCATGTCATAAAGAAGCATGTAAAG
CACCGTTCTATTGGAAAGGCAACTTTGGGCGTTGTATGGCTACTTGTGGA
AGCGGGCACAAATTGAAAGTCTTGTCATGCGTAGAAAGAGCAACAGGTCA
CGTGACAGAAAACGAAAAATGTAAAGATGCAGCAATTCCCGATGACGAGC
AATGTACAATGGAGCCATGTAAACCAGTATTTGAGACGGACAAGATGCCA
CCAACGTATGCAGTGGGTTGCTATGGTGACCAACCAACACCAAGACGTGT
ACCAATTTATTTGGAAAACATGAAAGATATCTACGATCCAGCTAACCCAC
TTCCAATGATTCAGAAATGTGCTGAGAAGGCTCACTCCATGGGTTATGTA
TATTTCGCAACACAATACTTCGGAGAATGTTGGGCTGGTGACTTGAATAC
TGCAGAACAATATTATTTGAATGGATACACTGATAGATGTGAAAATGGTA
TTGGTAAAGTTGCTGCTAATTTTGTATACAAGATTGGAACGCCAGAATCA
TATCCACCAGTACCAGCTCTGGTCAACCTTGGATGTTACAATGATGACCC
AGAAGATCGATCATTCCAAACACATCTTGATAACTTCCGACCAATCCTCG
ACTGGGACAAGAAAAACTTTGATGATCTGGTTACTAAATGTGCTCAATCA
GTGAGCCGACGAAAATGGAATGTTTTTGGTATTCAATATTACGGTGAATG
TTGGAGCGGTGAAAATGCTGTCAATACGTACGCGCATACGGGCAAAGCAG
ATCGCTGCTCGAACGGAATCGGAGAAGTCAACGCAAACGCTGTTTACGTT
TTTGTTGAATAATTTTCATCGATTCATTTATCGATTAGATGACATCATAA
TCTTTTTTTGGGAGGAATCTGggtataattttttataattatttctTTAC
GCatatttatttaatattttattttgggAAATTGTAAATGGATATTTATT
TTTCGAA

Run BLAST on NCBI

transcript from alignment at sc0000001:2036582..2050641-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000235 ID=TCONS_00000235|Name=TCONS_00000235|organism=Clytia hemisphaerica|type=transcript|length=14060bp|location=Sequence derived from alignment at sc0000001:2036582..2050641- (Clytia hemisphaerica)
TACAGGTATTCAAACACGGCTCTTACAATGTATTCGTGAAGACGATCAAA
GTGTGGTCAGTTCCTCATCATGCGAAGGTTTAGAGGGACCTGTAACGCAA
CAATCATGTAATGCTAATGTTTGCCCCGCATTGTAAGTTCAGTAACGCAA
CAATCATGTAATGCTAATGTTTGCCCCGCATTGTAAGTTCATTATAAATA
AAACATTGAGTTTGAAGCCCCGAATGAGGTCGAGAGGAATCTTTAACCTT
TCACAAGCAAGAAAAAGTGAAAGCCTTAAGATTGGTGCCGTATTTATAAT
GACGGATTGAATCTATTCATTTCTTTGTTTTTAAGCGGAATATTTTCCAA
AATCTGGCGATAGGTTTTACTTTCAATCTGGCATTTATCTATTTTTTTTA
TTTACAGTAATATATTTCCCAGGTCTATCAACCTCTATGAAATAATCATG
CTTAACATTTTACAATTTATGGAGATCTTTTTCCCATTCTGTGAGCACTT
TTTCTTTGAAGTTGGCGACAGATGTTGCAGCTACAACATCAACTCCAAGA
CCATTCCATATGTCAATACTTCTGTAGAACAACGAATTTGTTTGATACCC
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATACCCTCTGACACCATCATTTGCAAAGTTTCTTTGTAGTTCGT
AATCGTGCTGACGTTTCGGGCGTTCGCGAAGGACAAACTTTTGACAGGCC
GATGATGATTTTTGATGATATTTATGTGAAAACTTTTAGTTTTAAAACAC
GTTCAATTCGGTAGAAGGTGATAGAGAGTGAGAAATTCTCAATAAAGCTT
GGAAACTTAGTCCGACTGTGAAGTTATTCCGTTCCTCCTTGTTATACGTT
TTTCTTTCTTTATTAGATGGTACGTCACCGAATGGACCAAATGTTCGAAA
CTTTGTGGAAGTGGTACAAAGACAAGGAAACTTTATTGTTCACGTATCGA
CGGAACGGGACAACGTATCACAGTTGACGATAGCGAATGTACGGGTGAAA
AACCGGAAGACGTAGAGTTTACGTCAACATGTAACGTTATTGCGTGTCCT
GCGTATTACGTTTACGGAGAATGGACCCAGGTACGGATAGCTTCTCATCT
AACAGTTCTGTTAAGTTTCGAAACAAAAATGAAACCACTCTATTGGCTAG
AATTGATGTAATCCTTCACCCAGATGTGGGTCAATAATATAAGAATTATT
TCGATTTTTTCCTTTATCGCTTAGGAAGTTTCAAACAATAATTCCGACCA
TCCTATCTCTCTTTGTTCCTATCTCTGAAAAGGAATGACGAAATTGAACA
GGGTGTCCATTATAAGACCACCTCCGCCCACAAGTATCTTGACTGCAAGT
TGACAACAGTAGTTGACCTTACGGGAAATTTGTTCAATCAGAGCTAAACA
ACTGACATGTCAAGAAATGAGGAGGCAAGAGAGTTGTCCTGTTTGATTAA
ATTACCGGTATCCAAACTGTGGTCTACTTTTAGAAGATTTAGAATTATTT
TGCTTCAGCCAAGGATAGAGTAACTCCATCTAGTGTTCTATATAAGAAAT
ATGTGTGTCTCAGCTACGGTATGTTTTATTTCAATATTTTTTCTGGCACT
AGTGTTCTGCTTCATGCAACGGTGGAAAACGCAGTCGATCATCGATCTGT
AAACATATCAGTGAAGTTGGAAAACTTGTTACAATCAATGTACAAGCTTG
TCTATATCTTGGTGATCCTTTGGTCTCTGAAACATGTAATGCTGATATTC
CATGTCCTGAATGGAAGATTGTATACTCCGAATGCTCCAAAACTTGCGAT
GGAGGTACCTAAGTTATTTTCAACTTACTTTTACCATAGTTTTTCTACTT
GGAAAGTTTATAATATTTCGTCTGGCTCTGATGGGACCGAGACTCCCAAA
ACCATCACAGCAGAATCACCTAAATATTTCATCACTTATATGGTTTTGCT
CACACGGGAACCAATCCTGACTAGATTTGAAATCGGACCTTCACTTCTAC
TTAAACTCAACATGAGCAGAGGATATGTTCTCTCCGTCTCCGGAGAGAAC
ATCCGTCTTTGAATAGTCTCATCTCCGTCTTTGAATAGTTATGTGATTGA
GATATCAGGCCCGGAGGAACAACCGTAAAAGTGGGCTCAAATGAAATAAA
ATTCGCTAGGAATTCGAGGAAAAAAATCTCATTTGCTCAAAAGGGTAGAG
GCTGAATTTTCCCCAGTCTGCCCGCTTCCGCTGGGCCTGGACATGCGCGA
TGAAATTCTTATAGTCTGTCGCCACAGGTTAAATTTCAGTAAAAGCTAAA
CTGTGGTGCTCATGGTAATAATCGTTAAAATTCTTCTTAGAAGCAATATA
CTGTCAAACTTTCAAAATTTGTGCGAAACGTCCAAACACCGTCCATATAG
AGTCATATAACCTTTATATACCCGGGACACAGTTCCTTGCTTTTGGTCAA
AAGAAATCTTCGAAAGTGGTACCCTTTTCTTTTTGGTACCATTACAAAAA
CAGTCATTCGATTTCAAACAATGCTATGTTACTACACGTTTTTTTATAAC
AACATCCAAAATTTTTGAAGCCTTTGGATGTTCTTAACTTTTTGAGTTTT
AAGCCTAAAATATTCTTAACATGTTCATATTTGACCATTTTGTGAGTATT
TTTGACCATTTTTCTAAAAAATAGAGTGTTTTTGAGTCTACAAAGCCTTA
AAATGTTCTTTAACTTGTTCTTAACATTTCGGCCATCGAAGCCTTGTGTT
CTTATATAGTTTGTTCTTATAAAAAAAACGTGTACCTGTAAAGTATCCAT
TGAAAGTGGCCCTCGTCATTTTTCATGATTTCATTTTTTTCAGGTATTCA
AACAGCATCTGTTGTTTGTACTGACCCCGATTCAGGAACTCAAGTGGATG
CTTCAACGTGTGATGCTTCGAAAAAACCTACGGTAACCGATGCGGATAGT
AAAGCTTGCAACGAAGAATTATGTGATCCTTATGTCTGGAGAGAACAAGA
TGGTGTTTGTAGCGTGACCTGCGGAAAAGGTAATCTCGTTCCCAAACATC
TCGATGTATGATTTTATTCGTGATATCTGTGACGTAATGTTTTATACGGA
AATAACTAAAATATCCTAGGCAATTACCACTATTTTTGTTTTTTAAATAC
AAGATTATGGTCAAATACCCGGGACAGTGCAATTTCTTTTCCAAAAAGGA
TGGGAAGCTACGGTTTTTAAAAGATGTAACCATTTGGAGATTGAGTGGCC
CATTCGTCAAAATAAGGTTTTCAATGAGATTTTTTATTTAATATTTCAAT
TCATTTATAGGTCTTTTGCCAATTACACAAGTCTGTTTCGGACGTGTTGA
AAAGAAAAATGTCGAAGAATCAAAATGTCCGTCGCCTAAACCTAAAGATC
CGACACCGAAAGAATGTGATGCAGGCGCATGTCCAGAAACATATTCATGG
AAAACCAAATTCAGTGAATGTAGTGTTACTTGTGGCACAGGTTTGCATAT
TGTTACTTCTTAGTGTTGATTTCAACTCTTATTGTTTCAATTTAGTTAAC
AAAAGGAAGAACAACGAGGCCGCGCGAGCATAGATTTGAAATAATAGACC
TTTTGATAAATTACGTCACGAACCTCACTTGCCTCGTTTTGAAATTATTG
CCAAGGTGATTAACTCCCAGCAGATTTTATTAAAACTACTTTCTATTTAT
AAAAAAATTATTTTTGGTAATTGTTTGAATACGAGGCAAGCGATGCTAGT
AACTTAATTTATCAAAAGGTCTATTCTTTCATCAGTTATCCTTTAGTCCT
ACGACAGACCATCCATATTGAACCAGCACTGCTCTAAGGGTGCAGATATT
ATTATTATGATCTGTCGAACTTGTTTAGCTTATGCGATCAACACTGCGAC
AACTTTCGCCTGAAAACAAAGTTGAAAACAACGGGGTCATGTTATTGATC
GCCGTATATTGTTTTGAAAATTACGTCGTGTCCAGCTGGATAATATACTG
CCTCCATCTAAACTAAATTGTTAAAAAAGGAAACAATAAAACTTTATTTT
AATTCTTTTCAGGTACCAAAACTCTAGAACCTTATTGCGTCAAAGATTCC
GATCAAAGTACATCGAACGAGGTGTTGTGCGATCCAGCAAAGAAACCTGG
CACTAGTACCGAACAATGTGCGCTTGGTGATTGTCCAATCAAATATTCTT
GGAACACGGAGATGAGTGAATGCAGTGTAACGTGTGGTGAAGGTATTTTC
AGACTTTTCTTTCTTTAAACACAGTAAATAACTTCGAAGTTTCTTGCCTC
TTCAGCACTACACACTTTTTTATAAGCAACCAGGCTGCTAAGGCTTGATC
CCTCAAATTCTGTTTCACTATCTCGTAAAGTAAAAGCGTTTTAGATAATC
TAACCATGGTAGGTGATAGCCATTGACCCAATATGTATAAATATGGTTGT
ACAGTCAAAGCAAATTTTTCAGAAAGTGAGCTTTAATGCTAAAAGCAAGC
CCAGCCCTGACCCGCAAAAATTGAAGTTGCTTATACAAAAAAAATGTGCT
ATACTTTACAAAAGGAAAAAAAGTACCTTTTAGGGACGTCTCGCACTTTC
GTCCTACGAAAATCGACCTATTTTCAATTTTTGGGATTACAGTAGTTTTT
ATCATAATCTTTCGGAATTGAAAATAGATCAGCTATCCGTCCAACATTTT
CATCGTTAATGTTTCTTTAGGCTGAGCGTATCCCCGAAATTGATTTTGAT
ATAGGGGATGTGTATTATGAATAAAATTCCCGCCCGACAGTTACCCCCGT
CTTTGTGTTTTTGGGTGGTATATTTTATCGAACAGGCTAAGTGAGCTTTA
CGCTTTCTGTGTGTCTTTACTCGAAAAACGAAGGAGAGTCATATCAGCCG
AAAGGTTGGCGTGCTTTTAGCTTTTCCAAGCAGAAAAAAATATGATTGCT
GTTGTTTTCGAAAACCCACGGAGCTTATGAAATTATATTGTGATGTCACG
TGGCCTAGATAGGATTTCCTACCTAACCACGGCGCACTCTATCTGCTACC
CCTTTACAGAAATCTGTGATCACATCTGATCTGTATTATTTTTTTAGGTG
TGAAAACGGCGTCGTACAAATGCGTCCGCAGTACAGATAACGCTCAAGTG
GATGACAGTAAATGCGAAGGAATCGCAAAACCAAATATTGCTAATGAGAA
ATGTGTTGAAGCTGCCTGTCCACCTACTTACTCTTGGAGAAAACATAATT
CGTCCTGCAGCGTCTCTTGTGGATCAGGTATAAAATGCTTTAGTCTAATA
CACGGGATGTAAAATTATACCAGTGCAGTCAAAACATGTGATTACTAAAA
AAAGTTCACATGATTTTATTCCCATGTTACTTATGCTTTACAACTTACAG
CTGATAACTTTATTAGTGTCAATAAATTCGAACCAATCAGAAATAAATGT
CATGTAACAAACACATAGAAATTTCGAGTAAAAGCGTGATTTGTCTTCAG
ACTTTAATTTTGCAAGCTGTGTATTGAATTTTCACGAGTTTTTATCACGC
TTTTCGCAAAATCTCTTTCAAGCATTTTCTAAACGTATTATATTATGAAT
ATCATACAGGAGTTGAAATACAGTCTTTGCTTATAGAAAATTGAAAAAAG
TCAAAATCTTGACTTTTTGTTAAAGTTGAAATTAGGCATCACATTAACTT
AAGACGGTCAACTTTCTGTGATCGCCCAAAGTAAGGCGAAGTGAGGTTAC
ATTTTGCAAGTCACCAAAGTCGCAAACCTTGAAATTATAATTTCGCCTTT
TGTAGATTTTATCGCTGATAATATTTATATTGACTCGTAAACTTTTTATC
CAATAAACTTTTCGATTTTGATGACTCGCAAAATATAACTTCAATCGTTT
TCCTTCGGACGATCTTCTCACAGAAAGTTCATCGTCTAAAGTCAATCTGA
TGTCTAATTTTGACTTCAAAATATTGGCTTTTTCAATTTTCTTTAAGCAA
AGACTGTATTAAGCAAGTTCTTTAATGCTTATCTTATGTCACGTGACCTA
ATTTGAAGAGACTGGGATTCGAGTCGGGGCCCTTAGTTATAGTTGCGTTG
ATACCTTAGACCATTCGTCTATACGCTTCTCAGTGTTAAAAGTTCTTATG
TCTCAGACGGATTTCCGTCTCAGCAAAGTATGTAAAGAGGTTCCCGTCTC
GAAACTCTGCATAATGTACCAAAATCTCAAGAATATATGTGCTATTAGAC
CTTTTCATAAATTACGTTACGAAAATCACTTGCCTCGTTTCGAAATTATT
GCCATGGTGATTAACTCCCAGCAGATTTTATTAAAACTACTTTCTATTCA
TAAAAAAATCATTTAATGTCTCGAGGGGACATAATCATTATGGTAATTGT
TTGAATACGAGGCAAGTGAGGTTCTTGACGTAATTTATGAAAAAGGTCTA
TTTGCTATGTAAAATCCATTTCCCGTTTCAAACTAAAAAACTTGCTTTGA
CCACTGATTCCTATAATAAGAATTTCTTTTGATTTCATTATCTCACATCA
GGAATCATTACTCAATCTGGTCATTGCCACCGAGACGAAGATGGCGAGAG
AATGGAAGAATCCTTCTGTAATGTTTCACAAAAACCAACAACACAGACTT
TCTCATGTCATAAAGAAGCATGTAAAGCACCGTTCTATTGGAAAGGCAAC
TTTGGGCGTTGTATGGCTACTTGTGGAAGCGGTAAGTGGCCCCATGATTT
TCGTGTATTGTATTTCAACATAAAATTCGTGCATTTGTTACATGATATGT
GCAGATTTCCCTGTGAGAAAGATGTTGAAAAAATCTTTTGACGGAAGGTG
CTTTTTAGCCATATGCCTTATAAGGAAATGAAGGTTCTCCGTCGTAAATT
TTGAACCCCCTGTGATCCGCAACTGTTTGAGAGATTTTTTTATCCCCCTT
CTTTTTATGATTTCCACACACAACCTATTCCTTTTCTTACCGTCAGGGCA
CAAATTGAAAGTCTTGTCATGCGTAGAAAGAGCAACAGGTCACGTGACAG
AAAACGAAAAATGTAAAGATGCAGCAATTCCCGATGACGAGCAATGTACA
ATGGAGCCATGTAAACCAGGTACAACTTGATTCTCCCTGATCGTTTCCCG
ATTTCCCCCAATAGTTGGCCGATTATACCTTGATCAATAATTGGAGCTGT
TATTTATTTTCCACATTTTGATTTCATCCATTTTAAATGAAGATATTGCA
TAGAACGTCTTTTTTGACGGAAAAATGAGGAAAAAAATGGATTAGATCTT
TAATTTTTAATGTTATTTTTAATTAGTCCAATTCTAATGACAATATGCTT
CGTGAGTGGAAGGAAAGACTAGTTTTGAATAACTGAGAGCTCCCCTATCG
TCTGGCTAAATATGTTACCCCTTAGCCAAANGGGATAACACACACAAACT
TTTCTACTCAATCGCATGTTCAAACTCGATACTTTAATTAGGGACACCCT
GTATTATGAATATCATACAGGAGTTGAAATACAGTCTTTGCTTATAGAAA
TCTTGACTTTTTGTTAAAGTTGAAATTAGGCATCACATTAACTTAAGACG
GTCAACTTTCTGTGATCGCCCAAAGTAAGGCGAAGTGAGGTTACATTTTG
CAAGTCACCAAAGTCGCAAAATTTGAAATTATAATTTCGCCTTTTGTAGA
TTTTATCGCTGATAATATTTATATTGACTCGTAAACTTTTCATCCAATAA
ACTTTTCGATTTTGATGGCTCGCAAAATATAACTTCACTTCGTCTTCCTT
AGGACGATCTTCTCACAGAAAGTCCATCGTCTAAAGTCAATCTGATGTCT
AATTTTGACTTCAAAATATTGGCTTTTTCAATTTTGTCTAAGCAAAGACT
GTATTAAGCAAGTTCTTTAATGCTTATCTTATGTCACGTGACCTAATTTA
TAGAGACTGGGATTCGAGTCGGGGCCCTTATTTATAGTTGCGTTGATACC
TTAGACCATTCGTCTATACGCTTCTCAGTGTTAAAAGTTCTTTCGTCTCA
GACGGATTTCCGTCTCAGCAAAGTATATAAAGAGGTTCCCGTCTCGAAAC
TCTGCATAATGTACCAAAATCTCAAGAATATATGTGCTATTAGACCTTTT
CATAAATTACGTTACGAAAATCACTTGCCTCGTTTCGAAATTATTGCCAT
GGTGATTAACTCCCAGCAGATTTTATTAAAACTACTTTCTATTCATAAAA
AAATCATTTAATGTCTCGAGGGGACATAATCATTATGGTAATTGTTTGAA
TACGAGGCAAGTGANGATGTCTCGAGGGGACATAATCACCATGGTAATTG
TTTGAATACGAGGCAAGTGAGGTTCTTGACGTAATTTATGAAAAAGGTCT
ATTTGCTATGTAAAATCCATTCCCCACCTTGCTTTGACCACTGACTCCTA
TAATAAGAATTTCTTTTGATTTCATTATCTCACATCAGGAATCATTACTC
AATCTGGTCATTGCCACCGAGACGAAGATGGCGAGAGAATGGAAGAATCC
TTCTGTAATGTTTCACAAAAACCAACAACACAGACTTTCTCATGTCATAA
AGAAGCATGTAAAGCACCTTTCTATTGGAAAGGCAACTTTGGGCGTTGTA
TGGCTACTTGTGGAAGCGGTAAGTGGCCCCATGATTTTCGTGTATTGTAT
TTCAACATAAAATTCGTGCATTTGTTACATGATATGTGCAGATTTCCCTG
TGAGAAAGATGTTGAAAAAATCTTTTGACGGAAGGTGTTTTTTAGCCATA
CTCCTTATAAGGAAATGAAGACTCTCCATTTTAAATTTTGAACCCCCTGT
GATCCGCAACTGTTTGAGAGATTTTTTTATCCCCCTTCTTTTTATGATTT
CCACACACAACCTATTCCTTTTCTTACTGTCAGGGCACAAATTGAAAGTC
TTGTCATGCGTAGAAAGAGCAACAGGTCACGTGACAGAAAACGAAAAATG
TAAAGATGCAGCAATTCCCGATGACGAGCAATGTACAATGGAGCCATGTA
AACCAGGTACAACTTGATTCTCCCTGATCGTTTCCCGATTTCCCCCAATA
GTTGGCCGATTATACCTTGATCAATAATTGGAGCTGTTATTTATTTTCCA
CATTTTGATTTCATCCATTTTAAATGAAGATATTGCATAGAACGTCTTTT
TTGACGGAAAAATGAGGAAAAAAATGGATTAGATCTTTAATTTTTAATGT
TATTTTTAATTAGTCCAATTCTAATGACAATATGCTTCGTGAGTGGAAGG
AAAGACTAGTTTTGAATAACTGAGAGCTCCCCTATCGTCTGGCTAAATAT
GTTACCCCTTAGCCAAAATTGATTATGGTTTTTCCTCTCTAATATCGTCC
GCCAACTAGCCGAGAATCCGCCAACTGACCAAAGGAAGTGCCGTCTTTTT
AATACAATCATATGAACAAGTTTACTTTCCATTAAATCGAATCTAATATA
TAAGAAAATCAAAACTAGCCACAAAATTGTATAAATAAGCTTCATCTAAA
GTTCTATAGGAACTTGCCTGGACACCAAACCGTCCGCCAACAGGACCAAT
GACTCTAGCGGAAATTCTGTTTAGAGATAGGTGACTTTAATTTCTTTTTC
GTNCAACTTGATTCTCCCTGATCGTTTCCCGATTTCCCCCAATAGTTGGC
CGATTATACCTTGATCAATAATTGGAGCTGTTATTTATTTTCCACATTTT
GATTTCATCCATTTTAAATGAAGATATTGCATAGAACGTCTTTTTTGACG
GAAAAATGAGGAAAAAAATGGATTAGATCTTTAATTTTTAATGTTATTTT
TAATTAGTCCAATTCTAATGACAATATGCTTCGTGAGTGGAAGGAAAGAC
TAGTTTTGAATAACTGAGAGCTCCCCTATCGTCTGGCTAAATATGTTACC
CCTTAGCCAAAATTGATTATGGTTTTTCCTCTCTAATATCGTCCGCCAAC
TAGCCGAGAATCCGCCAACTGACCAAAGGAAGTGCCGTCTTTTTAATACA
ATCATATGAACAAGTTTACTTTCCATTAAATCGAATCTAATATATAAGAA
AATCAAAACTAGCCACAAAATTGTATAATAAGCTTCATCTAAAGTTCTAT
AGAAACTTGCCTGGACACCAAACCGTCCGCCAACAGGACCAATGACTCTA
GCGGAAATTCTGTTTAGAGATAGGTGACTTTAATTTCTTTTTCGTCTGTA
CAGTATTTGAGACGGACAAGATGCCACCAACGTATGCAGTGGGTTGCTAT
GGTGACCAACCAACACCAAGACGTGTACCAATTTATTTGGAAAACATGAA
AGATATCTACGATCCGTAAGTAGGAGATTATACTTTAAGGAAACTTATTT
TGGCGGGAACTAATTGTGACGAGCGGCAAAAATCCTGAAAATTTTTAATT
TTGGCAGGAACTAATTTTGGCGAGTGAGCAAAATATTTGATTTTGGCGGG
AATTAATTTTGGCGAATTTTGTCTAAATTCGCCGAATTCGCCAAAATTAG
TTCCCGCTAAAATAAGTTCACCTTTGACCAAGCTAGGTAATTCCGACCCA
TCCCCCTATTTTTTGGTTTCACTACATTTCAAAAAATTTCTTGTAATTTT
TAAGTCGGTGTCTAGATGCAACTCTATCTTAAGACCTAATTTCCGCGTAG
AGCTTTGTACTCTTTCGCATTTTCGGCCAAACAAAACCTTTCATTGGATT
TAATAACCTAGATGATTATTGTCCATGGCCAACTCGGTTTTCTATGACCT
GAATTCAAGATGGAAGAAGCGAGGACTCGAACCGAGAGCCCCGGGTTTAT
TCTTTTTACGGTTTACACACTATTACGCTCTTGTCTTGTACTGTGTTTTA
AAGTTCTGATTTTACACTTAGAAATTTGTTTTTTGAGTACTCTATTGACC
GTTTTGAGGAGCAAACTCTGCTACTCTCGACACTTGGTGTTTTGAGCATT
CTTGGGGCAACAGCAATATCTATGCTCGCTTACCCGAGCTGCACTGACGA
GTCCTGGGAAGGACGAAGCACTTGTCTGTAGATATAATTCGAATTACACC
TTTTTTTATAAGAGCAAACTATATAAGAACATAAGGCTTCGATGACCAAA
ATGTTAGGAACAAGTTAAGAACATTTTAAGGCTTCATGGGCTCTAAAAAA
TCCAACTTCTTAGGCAGTTGCACAAAAATAATCGCAAAATGGTGAAATTA
AGAATATTCTAAGAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAACA
TTCGAAGGCTTCAAAAATTTTGGATGTTCTTATAAAAAACGTGTACTGCT
TTATTTTTAGAGCTAACCCACTTCCAATGATTCAGAAATGTGCTGAGAAG
GCTCACTCCATGGGTTATGTATATTTCGCAACACAATACTTCGGAGAATG
TTGGGCTGGTGACTTGAATACTGCAGAACAATATTATTTGAATGGATACA
CTGATAGATGTGAAAATGGTATTGGTAAAGTTGCTGCTAATTTTGTATAC
AAGATTGGAACGCCAGAATGTAAGCTTTTGTATTCTCTGATCATTCGTAA
GGATGCCCCCAACTCTGATCACGATATCACGCAATTTTTTGTCTTCAACC
ACGGTCACGCAAATCAGCAAAGAAAATGGACAACACGCATTCCTTTGAAA
AAGTCCAAATCACGCATCACGGCTCAAAAATCTTTCAAATCATGATCACG
TTTTGACCTCTCATCACGCAATCACGAAGAATAAATTACCAAATCAAGTA
ATCACGCTGCAAAAAAAGTCCCTTTCACGAAAACCGCTTGGGGGCCTCAT
GCATGATTGTTTTGTTAGAATATCTATTAAAGTCCATTTGCTTTAAGTGT
GCACTCTTTCTTGCCACCATGTAGAAACCATGCCAGTGAAATTATGGTAA
TAGATCTTATCGGAGTAATTCCTCGAGGGAATTCTATTTTAATACCTCTG
AAACAATCCCACAATGCATCGCTGTTTTAGAAAAATCAAAAACTCCGATA
AGGTCTATTCTTTTGAAAACGGTTTCCACATAATAGCACAATAGAGTGCA
CACTGGAATTGCATGGTCTTTACATTGAAAATTGCCCGAACCCTACGTGC
TACGAAGACAAATTTAGATAAGTTTGAATCTGAAAAAATAAGCTCCTTCA
ATTTTAGTTGATTCTTAAGAATACATCGCACTTCCAGACAATGAACTAAA
AATAGTGAATCATATAGAAGAATTAGTTCCAGGCTTTTGTAACAATATTT
GGGGTGCCTTATAACGAGGGAAAATTTTCTTTGAAAATATTAATTTTTTA
TGAATCCCCGGGTGGTTCGTCCCAAAAGTTTTCGTAAGAGGAGTCTTCGG
GGTGCCTCCGAATGTGGTTGCAGACTTACTTACTTTCTTATCATATTTCT
TCAGCATATCCACCAGTACCAGCTCTGGTCAACCTTGGATGTTACAATGA
TGACCCAGAAGATCGATCATTCCAAACACATCTTGATAACTTCCGACCAA
TCCTCGACTGGTATGTATTCTTTAATCAATCTCCTCAAAACTTTAAAACT
GCAAGTGATTTTTAAGTGCTTTGAAGTACAGTTCGGAAGTAAAGTTTTAA
CTCTGAGTTTTAACATTACATTAGACTTAATACTTAAGACCTTATAATCT
GAGGATCTAAAAGCTCAAAAATGTTTCAATAAGGCTGAGAATATAGCCTG
AAAGCCACTTAACCCCTCCCAAATCGAAAAATCCTATGAAGCAAAGTGGA
AGTACTGAAACTGCAATTCTCGCCCGACCTTTAAATTCTGAAAAACGTTA
AAATATCCAAAATTGCCAATATATTTCGGCGCTGATTGTACCATTCACCA
TTTTGAACTCGTTGTGTTTTTCAACTTTCACTAAACACAATTACAATAAA
CTCCCTCTAATTCGTTCGAACCTCTGTTATTCGAATCATTGAACCCCAGA
AGCTAAAAGCTTTAGTCCATTCATATATTCCATCAATCTTTAGGAAATCT
CCTTGTTCCTATATCTTGTGAAAAAAGTCGTATGCATTGGACCATTCCAT
TTTATATCCATACAGGGGGTTGGACGAACATTTCCAGAGGGTAATCTGAG
AAATATTTCCAGGGGGTGTTTTTCCATTTTTCCAAGGGGGTAAAAAGTTA
TTTTAAAATTTCCAGGGGTTAAAAGACAGATTTTAGTTTGTCCACCCTCA
CTTTAAGGTATGAAAAGAACTTTTCAAAGGGCAATTTATCCACACATTTT
CTATAATTTTCTTTTGACTTGAAAAGGTTCGTCCATCCCCTGTATGTTTT
TTTTATGGAACAACCCATTTTCGAGAAGCGAATCACTTCCAATTTTTTTG
AATTTTTTATGACTTTTCTTCAAGTAATTTACCCCTATTGCTTTTCTCTT
TTTCTAGGGACAAGAAAAACTTTGATGATCTGGTTACTAAATGTGCTCAA
TCAGTGAGCCGACGAAAATGGAATGTTTTTGGTATTCAATATTACGGTGA
ATGTTGGAGCGGTGAAAATGCTGTCAATACGTACGCGCATACGGGCAAAG
CAGATCGCTGCTCGAACGGAATCGGAGAAGTCAACGCAAACGCTGTTTAC
GTTTTTGTTGAATAATTTTCATCGATTCATTTATCGATTAGATGACATCA
TAATCTTTTTTTGGGAGGAATCTGGGTATAATTTTTTATAATTATTTCTT
TACGCATATTTATTTAATATTTTATTTTGGGAAATTGTAAATGGATATTT
ATTTTTCGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000129	XLOC_000129	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001	supercontig	sc0000001:2036582..2050641 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.930128	0.90689	0	0	0.358378	0.242012	0.170832	0.377715	0.111972	0	0.269241	0.176989	11.0464	9.6139	0	0.161941	5.18695	6.00495	51.9464	61.1842	8.56107	9.77556	3.5041	4.15531	8.7054	9.74909	0	0.0725104	0.574911	0.60104

Blast

[Close]

BLAST of TCONS_00000235 vs. Swiss-Prot (Human)
Match: ATS20 (A disintegrin and metalloproteinase with thrombospondin motifs 20 OS=Homo sapiens GN=ADAMTS20 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.720e-31
Identity = 157/585 (26.84%), Postives = 242/585 (41.37%), Query Frame = 2

Query:    5 GIQTRLLQCIREDDQSVVSSSSCEGLEGP-VTQQSCNANVCPALWYVTEWTKCSKLCGSGTKTRKLYCSRID-GTGQRITVDDSECTGE-KPEDVEFTSTCNVIACPAYYVYGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNADIPCPEWKIV-YSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKP-TVTDADSKACNEELCDPYVWREQDGVCSVTCGKGLLPITQVCFGRVEKKNVEESKC-PSPKPKDP-----TP----KECDAGACPETY-----SWKT-KFSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDC--PIKYSWNTEMSECSVTCGEGVKTASYKCVRSTDNAQVDDSKCEGIAKPNIANEKCVEAACPPTYS---------------------------------------WRKHNXXXXXXXXXXXXTQSGHCHRDEDGERMEESFCNVSQKPTTQTFSCHKEACKAPFYWKGNFGRCMATCGSGHKLKVLSCVERATGHVTENEKCKDAAIPDDE-QCTMEPC 1570
            G+Q R + CI + D SVVS   C+ L  P    QSCN + C   W+V   ++CS  CG G +T  ++C +     GQ + VDD  C  + KP   E    C+       + Y EW+QCS SC GG+RSR S C  ++  G  +  N   C  L   +  E CN +  CP W    +SEC  TC  G +   V C    +   +    C++S KP +++  +   C      P+      G C+ TCG G       C   +    +E+++C  + +P D      TP     + +    P         W+   ++ CSV+CG GT+     C +D+    ++E  C    +P        + DC  P       + S CS +CG G  T    C+    +  +D++ C+   +P +  ++C  AACPP +S                                       WR        S  SG +       +DE+G+    S+C+ + KP  +   C    C  P +  GN+G C  TCG G K +++ C +   G + E+  C+    P    QC M  C
Sbjct:  865 GLQRRNITCIHKSDHSVVSDKECDHLPLPSFVTQSCNTD-CELRWHVIGKSECSSQCGQGYRTLDIHCMKYSIHEGQTVQVDDHYCGDQLKPPTQEL---CHGNCVFTRWHYSEWSQCSRSCGGGERSRESYC--MNNFGHRLADN--ECQELSR-VTRENCN-EFSCPSWAASEWSECLVTCGKGTKQRQVWCQ--LNVDHLSDGFCNSSTKPESLSPCELHTCASWQVGPW------GPCTTTCGHGYQMRDVKCVNELASAVLEDTECHEASRPSDRQSCVLTPCSFISKLETALLPTVLIKKMAQWRHGSWTPCSVSCGRGTQARYVSC-RDALDRIADESYCAHLPRPA------EIWDCFTPCGEWQAGDWSPCSASCGHGKTTRQVLCMNY--HQPIDENYCDPEVRP-LMEQECSLAACPPAHSHFPSSPVQPSYYLSTNLPLTQKLEDNENQVVHPSVRGNQWRTGPWGSCSSSCSGGLQHRAVVCQDENGQ--SASYCDAASKP-PELQQCGPGPC--PQWNYGNWGECSQTCGGGIKSRLVIC-QFPNGQILEDHNCEIVNKPPSVIQCHMHAC 1415

HSP 2 Score: 93.5893 bits (231), Expect = 2.620e-19
Identity = 169/682 (24.78%), Postives = 265/682 (38.86%), Query Frame = 2

Query:    5 GIQTRLLQCIREDDQSVVSSSSCEGLEGPVTQQSCNANVCPALWYVTEWTKCSKLCGSGTKTRKLYCSRIDGTGQRITVDDSECTGEKPEDVEFTSTCNVIACP-------------AYYV----------------------------YGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNADIPCPEWKI-VYSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKPTVTDADSKACNEELCDPYVWREQDGV-CSVTCGKGLLPITQVCFGRVEKKNVEESKCPSPKPKDPTPKECDAGACPETYSWKTK-FSECSVTCGTGTKTLEPYC-VKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKYSWNTEMSECSVTCGEGVKTASYKCVRSTDNA--QVDD----SKCEGIAKPNIANEKCVEAACPPTYSWRKHNXXXXXXXXXXXXTQ--SGHCHRDEDGERMEESFCNVSQKPTTQTFSCHKEACKAPFYWK-GNFGRCMATCGSGHKLKVLSCVERATGHVTENEKCKDAAIPD-DEQCTMEPCKPVFETDKMPPTYAV---GCYGDQPTPRRVPIYLENMKDIYDPANPLPMIQKCAEKAHSMGYVYFATQYFGECWAGDLNTAEQYYLNG-YTDRCENGIGKVAANF 1873
            G Q R + C R+    +   S C  L  P     C        W   +W+ CS  CG G  TR++ C           +D++ C  E    +E    C++ ACP             +YY+                             G W  CS+SC+GG + R+ +C+   E G+    +   C     P   + C    PCP+W    + ECS+TC GGI++  V+C  P+     D +    +K P+V      AC  ++     W ++    CS +CGKG       C  + ++K +E++ C S   K PT K C +  CP   SWK   ++ECSVTCG+G +  + YC +K   Q    E +CD + +P  S  +C   DC            CS +C    +  S++ +  TDN   QV++    S    +   N  N  C         S   +N   S        T+  S   H+      +    C V   P++Q + C   +C     WK G + +C  TCG G   + + C+   T H   ++ C +   P   ++C    CK      ++     +   G Y      R + IY  +M  + +P   L ++Q                + F E +   L    Q   NG   + CE   G +AA +
Sbjct: 1171 GTQARYVSC-RDALDRIADESYCAHLPRPAEIWDCFTPC--GEWQAGDWSPCSASCGHGKTTRQVLC-----MNYHQPIDENYCDPEVRPLME--QECSLAACPPAHSHFPSSPVQPSYYLSTNLPLTQKLEDNENQVVHPSVRGNQWRTGPWGSCSSSCSGGLQHRAVVCQ--DENGQ----SASYCDAASKPPELQQCGPG-PCPQWNYGNWGECSQTCGGGIKSRLVICQFPNGQILEDHNCEIVNKPPSVIQCHMHACPADV----SWHQEPWTSCSASCGKGRKYREVFCIDQFQRK-LEDTNC-SQVQKPPTHKACRSVRCP---SWKANSWNECSVTCGSGVQQRDVYCRLKGVGQVV--EEMCDQSTRP-CSQRRCWSQDCVQHKGMERGRLNCSTSCE---RKDSHQRMECTDNQIRQVNEIVYNSSTISLTSKNCRNPPCNYIVVTADSSQCANNCGFSYRQRITYCTEIPSTKKHKLHRLRPIVYQECPVV--PSSQVYQC-INSCLHLATWKVGKWSKCSVTCGIGIMKRQVKCI---TKHGLSSDLCLNHLKPGAQKKCYANDCKSFTTCKEIQVKNHIRKDGDYYLNIKGRIIKIYCADMY-LENPKEYLTLVQ--------------GEENFSEVYGFRLKNPYQCPFNGSRREDCECDNGHLAAGY 1799

HSP 3 Score: 87.0409 bits (214), Expect = 2.715e-17
Identity = 121/457 (26.48%), Postives = 188/457 (41.14%), Query Frame = 2

Query:  329 YGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDP-LVSETCNADIPCPEWKIVYSECSKTCDGGIQTASVVCT----DPDSGTQVDASTCDASKKPTVTDADSKACNEELCDPYVWREQDGVCSVTCGKGLLPITQVCFGRVEKKNVEESKCPSPKPKDPTPKECDAGACPETYSW-KTKFSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKYSWNT-EMSECSVTCGEGVKTASYKCVRSTDNAQVDDSKCEGIAKPNIANEKCV----------EAACPPTY------SWRKHNXXXXXXXXXXXXTQSGHCH-RDEDGERMEESFCNVSQKPTTQTFSCHKEACKAPFYWKGNFGRCMATCGSGHKLKVLSCVERATGHVTENEKCKDAAIPDDEQ-CTMEPCKPV---FETDKMPPTYAV 1615
            YG W  C+  C G +R R+  C H S+      ++ + C +L  P  V+++CN D       I  SECS  C  G +T  + C           QVD   C    KP   +     C         W +    CS +CG G       C      + + +++C   +    T + C+  +CP   SW  +++SEC VTCG GTK  + +C  + D  +     C+ + KP  S   C L  C    SW       C+ TCG G +    KCV    +A ++D++C   ++P+   + CV          E A  PT        WR H S    S   G  TQ+ +   RD      +ES+C    +P  + + C     +   +  G++  C A+CG G   + + C+      + EN  C     P  EQ C++  C P    F +  + P+Y +
Sbjct:  853 YGPWEGCTKMCQGLQR-RNITCIHKSDHS---VVSDKECDHLPLPSFVTQSCNTDCELRWHVIGKSECSSQCGQGYRTLDIHCMKYSIHEGQTVQVDDHYCGDQLKPPTQELCHGNCVFTRWHYSEWSQ----CSRSCGGGERSRESYCMNNFGHR-LADNEC--QELSRVTRENCNEFSCP---SWAASEWSECLVTCGKGTKQRQVWCQLNVDHLSDG--FCNSSTKP-ESLSPCELHTCA---SWQVGPWGPCTTTCGHGYQMRDVKCVNELASAVLEDTECHEASRPS-DRQSCVLTPCSFISKLETALLPTVLIKKMAQWR-HGSWTPCSVSCGRGTQARYVSCRDALDRIADESYCAHLPRP-AEIWDCFTPCGE---WQAGDWSPCSASCGHGKTTRQVLCMNYHQP-IDEN-YCDPEVRPLMEQECSLAACPPAHSHFPSSPVQPSYYL 1281

The following BLAST results are available for this feature:

BLAST of TCONS_00000235 vs. Swiss-Prot (Human)

BLAST of TCONS_00000235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
ATS20	1.720e-31	26.84	A disintegrin and metalloproteinase with thrombosp...	[more]

You are here

TCONS_00000235 (transcript) - C. hemisphaerica

ZOOM

x 1

POSITION

0