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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000233 ID=TCONS_00000233|Name=TCONS_00000233|organism=Clytia hemisphaerica|type=transcript|length=2268bpRun BLAST on NCBI transcript from alignment at sc0000001:2036582..2050502- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000233 ID=TCONS_00000233|Name=TCONS_00000233|organism=Clytia hemisphaerica|type=transcript|length=13921bp|location=Sequence derived from alignment at sc0000001:2036582..2050502- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000233 vs. Swiss-Prot (Human)
Match: ATS9 (A disintegrin and metalloproteinase with thrombospondin motifs 9 OS=Homo sapiens GN=ADAMTS9 PE=1 SV=4) HSP 1 Score: 120.939 bits (302), Expect = 7.640e-28 Identity = 114/361 (31.58%), Postives = 162/361 (44.88%), Query Frame = 3
Query: 9 QQSCNANVCPALWYVTEWTKCSKLCGSGTKTRKLYCSRIDGTGQRITVDDSEC-TGEKPEDVEFTSTCNVIACP--AYYVYGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNADIPCPEWKI-VYSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKPTVTDADSKACNEELCDPYVWR-EQDGVCSVTCGKGLLPITQVCFGRVEKKNVEESKCPSPKPKDPTPKECDAGAC---PETYSWKT-KFSECSVTCGTGTKTL-----EPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKYSWNT-EMSECSVTCGEGVKTASYKCVRSTD 1046
Q++C + CP W W +C+KLCG G +TR + C R +G D C +KP D E CN ACP A + G W+ CS SC G + R+ C +++ G + C +L P C CP+WK +S+CS +C G+Q V C GT A + + P + C C Y WR E+ C+ TCG+G VC K V ++C D + + D +C P Y W T ++SECSVTCG G K E Y K++ + + + P +P S C L DCP+ +W CSV+CG GV S +C+ + D
Sbjct: 1375 QRACESGPCPQ-WAYGNWGECTKLCGGGIRTRLVVCQRSNGE----RFPDLSCEILDKPPDRE---QCNTHACPHDAAWSTGPWSSCSVSCGRGHKQRNVYC--MAKDGS--HLESDYCKHLAKPHGHRKCRGG-RCPKWKAGAWSQCSVSCGRGVQQRHVGC---QIGTHKIARETECN--PYTRPESERDCQGPRCPLYTWRAEEWQECTKTCGEGSRYRKVVCVDD-NKNEVHGARC------DVSKRPVDRESCSLQPCEYVWITGEWSECSVTCGKGYKQRLVSCSEIYTGKENYEYSYQTTINCPGTQP-PSVHPCYLRDCPVSATWRVGNWGSCSVSCGVGVMQRSVQCLTNED 1709 HSP 2 Score: 116.701 bits (291), Expect = 1.541e-26 Identity = 149/541 (27.54%), Postives = 235/541 (43.44%), Query Frame = 3
Query: 33 CPALWYVTEWTKCSKLCGSGTKTRKLYC---SRIDGTGQRITVDDSECTGE-KPEDVEFTS-TCNVIACPAYYVYGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNADIPCPEWKIV-YSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKPTVTDADSKACNEELCDPYV---WREQDGVCSVTCGKGLLPITQVCFGRVEKKNVEESKC-PSPKPKDPTPKECDAGAC------PE----TYS-----WKT-KFSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKYSWNT-EMSECSVTCGEGVKTASYKCVRSTDNAQVDDSKCE-----------------------GIAKPNIANEKCVEAACPPTYS-------WRKHNXXXXXXXXXXXXTQSGHCHRDEDGERMEESFCNVSQKPTTQTFSCHKEACKAPFYWKGNFGRCMATCGSGHKLKVLSCVERATGHVTENEKCKDA-AIPDDEQCTMEPC 1481
C W+V ++CS CG G +T +YC SR+DG ++ VDD C+ KP + E S CN + Y WT+CS SC+GG + R +IC + + ++ C + + + + C ++ PCP+WK +SEC TC G + V C + +++ CD KPT + C + C + W G CSVTCG+G C V+++ C + +P D ++C+ +C PE TYS W+ ++ CS TCG GT+ C +D + S ++E C +P + E+C++ C W + S CSVTCG+G T CV +D+ +D S+C+ G+A+ NE + P+ + WR S +G + +DE+G + C KP Q +C C P + GN+G C CG G + +++ C +R+ G + C+ PD EQC C
Sbjct: 935 CDLRWHVASRSECSAQCGLGYRTLDIYCAKYSRLDGKTEK--VDDGFCSSHPKPSNREKCSGECNT----GGWRYSAWTECSKSCDGGTQRRRAICVNT----RNDVLDDSKCTHQ-EKVTIQRC-SEFPCPQWKSGDWSECLVTCGKGHKHRQVWCQFGED--RLNDRMCDPETKPT----SMQTCQQPECASWQAGPW----GQCSVTCGQGYQLRAVKCIIGTYMSVVDDNDCNAATRPTD--TQDCELPSCHPPPAAPETRRSTYSAPRTQWRFGSWTPCSATCGKGTRMRYVSC-RDENGSVADESACATLPRP-VAKEECSVTPCG---QWKALDWSSCSVTCGQGRATRQVMCVNYSDHV-IDRSECDQDYIPETDQDCSMSPCPQRTPDSGLAQHPFQNEDYRPRSASPSRTHVLGGNQWRTGPWGACSSTCAGGSQRRVVVCQDENGYTAND--CVERIKPDEQR-ACESGPC--PQWAYGNWGECTKLCGGGIRTRLVVC-QRSNGERFPDLSCEILDKPPDREQCNTHAC 1439 HSP 3 Score: 116.316 bits (290), Expect = 2.047e-26 Identity = 130/442 (29.41%), Postives = 192/442 (43.44%), Query Frame = 3
Query: 240 YGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDP-LVSETCNADIPCPEWKIV-YSECSKTCDGGIQTASVVC---TDPDSGTQ-VDASTCDASKKPTVTDADSKACNEELCDPYVWREQDGVCSVTCGKGLLPITQVCFGRVEKKN--VEESKCPSPKPKDPTPKECDAGACPETYSWKT-KFSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKYSWNT-EMSECSVTCGEGVKTASYKCVRSTDNAQVDDSKCEGIAKPNIANEKCVEAACPP---------TYS-----WRKHNXXXXXXXXXXXXTQSGHCHRDEDGERMEESFCNVSQKPTTQTFSCHKEACKAP--FYWKG-NFGRCMATCGSGHKLKVLSCVERATGHVTENEKCKDAAIPD-DEQCTMEPC 1481
+G W CS C G +R R +C S+ +T++ Q C L P ++E C D W + SECS C G +T + C + D T+ VD C + KP+ + S CN W E CS +C G +C V +N +++SKC + T + C CP+ WK+ +SEC VTCG G K + +C D+ N+ +CDP KP TS + C +C SW +CSVTCG+G + + KC+ T + VDD+ C +P + + + PP TYS WR + + + RDE+G +ES C +P KE C WK ++ C TCG G + + CV + HV + +C IP+ D+ C+M PC
Sbjct: 884 HGPWQACSKPCQG-ERKRKLVCTRESD---QLTVSDQRCDRLPQPGHITEPCGTDCDL-RWHVASRSECSAQCGLGYRTLDIYCAKYSRLDGKTEKVDDGFCSSHPKPSNREKCSGECNTGGWRYSAWTE----CSKSCDGGTQRRRAIC---VNTRNDVLDDSKCT--HQEKVTIQRCSEFPCPQ---WKSGDWSECLVTCGKGHKHRQVWCQFGEDRL--NDRMCDPETKP-TSMQTCQQPECA---SWQAGPWGQCSVTCGQGYQLRAVKCIIGTYMSVVDDNDCNAATRPTDTQDCELPSCHPPPAAPETRRSTYSAPRTQWRFGSWTPCSATCGKGTRMRYVSCRDENGSVADESACATLPRPVA------KEECSVTPCGQWKALDWSSCSVTCGQGRATRQVMCVN-YSDHVIDRSECDQDYIPETDQDCSMSPC 1295 HSP 4 Score: 113.62 bits (283), Expect = 1.640e-25 Identity = 132/494 (26.72%), Postives = 197/494 (39.88%), Query Frame = 3
Query: 45 WYVTEWTKCSKLCGSGTKTRKLYCSRIDGTGQRITVDDSEC-TGEKPEDVEFTSTCNVIACPAYYVYGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNADIPCPE----------------------------------WKI-VYSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKPTVTDADSKACNEELCDPYVWREQDGVCSVTCGKGLLPITQVCFGRVEKKNVEESKCPSPKPKDPTPKECDAGACPETYSWKTK-FSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKYSWNT-EMSECSVTCGEGVKTASYKCVRSTDNAQVDDSKCEGIAKPNIANEKCVEAACPPTYSWRKHNXXXXXXXXXXXXTQSGHCHRDEDGERMEESFCNVSQKPTTQTFSCHKEACKAPFYW-KGNFGRCMATCGSGHKLKVLSCVERATG 1409
W WT CS CG GT+ R + C +G+ D+S C T +P E C+V C + +W+ CS +C G+ +R +C + S+ I+ C P + C+ PCP+ W+ + CS TC GG Q VVC D + T A+ C KP + +AC C + + G C+ CG G+ VC R + + C K P ++C+ ACP +W T +S CSV+CG G K YC+ D S C KP +C G CP W S+CSV+CG GV+ C T +++C +P + C CP Y+WR D++ + + C+VS++P + SC + C+ + W G + C TCG G+K +++SC E TG
Sbjct: 1186 WRFGSWTPCSATCGKGTRMRYVSCRDENGS----VADESACATLPRPVAKE---ECSVTPCGQWKAL-DWSSCSVTCGQGRATRQVMCVNYSDH----VIDRSECDQDYIPETDQDCSMS-PCPQRTPDSGLAQHPFQNEDYRPRSASPSRTHVLGGNQWRTGPWGACSSTCAGGSQRRVVVCQDENGYT---ANDCVERIKPD----EQRACESGPCPQWAYGNW-GECTKLCGGGIRTRLVVC-QRSNGERFPDLSC-EILDKPPDREQCNTHACPHDAAWSTGPWSSCSVSCGRGHKQRNVYCMA-KDGSHLESDYCKHLAKP-HGHRKCRGGRCP---KWKAGAWSQCSVSCGRGVQQRHVGCQIGTHKI-ARETECNPYTRPE-SERDCQGPRCP-LYTWRAEEWQECTKTCGEGSRYRKVVCVDDNKNEVHGARCDVSKRPVDRE-SCSLQPCE--YVWITGEWSECSVTCGKGYKQRLVSCSEIYTG 1645 HSP 5 Score: 107.457 bits (267), Expect = 1.288e-23 Identity = 134/509 (26.33%), Postives = 200/509 (39.29%), Query Frame = 3
Query: 3 VTQQSCNANVCPALWYVTEWTKCSKLCGSGTKTRKLYCSRIDGTGQRITVDDSECTGEKPEDVEFTSTCNVIACPAY---------------------------------YVYGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNADIPCPEWKI-VYSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKPTVTDADSKACNEELCDPYVWREQDG---VCSVTCGKGLLPITQVCFGRVEKKNVEESKCPSPKPKDPTPKECDAGACPETYSWKT-KFSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKYSWNT-EMSECSVTCGEGVKTASYKCVRSTDNAQVDDSKCEGIAKPNIANEKCVEAACPPTYSWRKHNXXXXXXXXXXXXTQSG-HCHRDEDG-ERMEESFCNVSQKPTTQ---TFSCHKEACKAPFYWK-GNFGRCMATCGSGHKLKVLSCV 1394
V ++ C+ C W +W+ CS CG G TR++ C +D SEC ++ E C++ CP + G W CS++C GG + R +C+ E G C+ P C + PCP+W + EC+K C GGI+T VVC + G + +C+ KP D + CN C P+ G CSV+CG+G C + + ++E C K ++C G CP+ WK +S+CSV+CG G + C + + E C+P +P S C CP+ Y+W E EC+ TCGEG + CV N +V ++C+ ++K + E C C Y W S Q C G E E S+ P TQ C+ C W+ GN+G C +CG G + + C+
Sbjct: 1229 VAKEECSVTPC-GQWKALDWSSCSVTCGQGRATRQVMCVNYSDH----VIDRSEC--DQDYIPETDQDCSMSPCPQRTPDSGLAQHPFQNEDYRPRSASPSRTHVLGGNQWRTGPWGACSSTCAGGSQRRVVVCQ--DENG----YTANDCVERIKPDEQRACESG-PCPQWAYGNWGECTKLCGGGIRTRLVVCQRSN-GERFPDLSCEILDKP----PDREQCNTHAC-PHDAAWSTGPWSSCSVSCGRGHKQRNVYCMAK-DGSHLESDYCKH-LAKPHGHRKCRGGRCPK---WKAGAWSQCSVSCGRGVQQRHVGC-QIGTHKIARETECNPYTRP-ESERDCQGPRCPL-YTWRAEEWQECTKTCGEGSRYRKVVCVDDNKN-EVHGARCD-VSKRPVDRESCSLQPC--EYVWITGEWSECSVTCGKGYKQRLVSCSEIYTGKENYEYSYQTTINCPGTQPPSVHPCYLRDCPVSATWRVGNWGSCSVSCGVGVMQRSVQCL 1705 HSP 6 Score: 103.99 bits (258), Expect = 1.362e-22 Identity = 138/534 (25.84%), Postives = 210/534 (39.33%), Query Frame = 3
Query: 9 QQSCNANVCPALWYVTEWTKCSKLCGSGTKTRKLYCSRIDGTGQRITVDDSECTGEKPEDVEFTSTCNVIACPAYYVYGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNADIPCPEWKI-VYSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKPTVT-DADSKACNEELCDPYVWREQDGV------------CSVTCGKGLLPITQVCFGRVEKKNVEESKCPSPKPKDPTPKECDAGACPETYSWKT-KFSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKPGTSTEQCALGDCPIKY-------------------------------SWNT-EMSECSVTCGEGVKTASYKCVRSTDNAQVDDSKCEGIAKPNIANEKCVEAACPPTYSWRKHNXXX-XXXXXXXXXTQSGHCHRDEDGERMEESFCNVSQKPTTQTFSCHKEACKAPFYWK-GNFGRCMATCGSGHKLKVLSCVERATGHVTENEKCKDAAIPDDEQ 1463
++ C+ W + WT+CSK C GT+ R+ C + +DDS+CT ++ ++ C+ CP + G+W++C +C G + R C+ + +N + C P +TC C W+ + +CS TC G Q +V C + VD + C+A+ +PT T D + +C+ P R CS TCGKG C R E +V + + P+ +EC C + WK +S CSVTCG G T + CV SD + CD P T + C++ CP + W T CS TC G + + V D + C KP+ C CP W N + CG GI T+ C R +GER + C + KP + C+ AC W G + C +CG GHK + + C+ + H+ E++ CK A P +
Sbjct: 989 REKCSGECNTGGWRYSAWTECSKSCDGGTQRRRAICVNT----RNDVLDDSKCTHQEKVTIQ---RCSEFPCPQWKS-GDWSECLVTCGKGHKHRQVWCQFGED-----RLNDRMCDPETKPTSMQTCQQP-ECASWQAGPWGQCSVTCGQGYQLRAVKCIIGTYMSVVDDNDCNAATRPTDTQDCELPSCHPPPAAPETRRSTYSAPRTQWRFGSWTPCSATCGKGTRMRYVSC--RDENGSVADESACATLPRPVAKEECSVTPCGQ---WKALDWSSCSVTCGQGRATRQVMCVNYSDHVI-DRSECDQDYIPETD-QDCSMSPCPQRTPDSGLAQHPFQNEDYRPRSASPSRTHVLGGNQWRTGPWGACSSTCAGG---SQRRVVVCQDENGYTANDCVERIKPD-EQRACESGPCP---QWAYGNWGECTKLCGGGIRTRLVVCQR-SNGERFPDLSCEILDKPPDRE-QCNTHACPHDAAWSTGPWSSCSVSCGRGHKQRNVYCMAKDGSHL-ESDYCKHLAKPHGHR 1491 HSP 7 Score: 103.605 bits (257), Expect = 2.110e-22 Identity = 98/317 (30.91%), Postives = 140/317 (44.16%), Query Frame = 3
Query: 9 QQSCNANVCP--ALWYVTEWTKCSKLCGSGTKTRKLYCSRIDGTGQRITVDDSECTG-EKPEDVEFTSTCNVIACPAYYVYGEWTQCSASCNGGKRSRSSICKHISEVGKLVTINVQACLYLGDPLVSETCNA-DIPCPEWKIV-YSECSKTCDGGIQTASVVCTDPDSGTQVDASTCDASKKPTVTDADSKACNEELCDPYVWREQD-GVCSVTCGKG----LLPITQVCFGRVEKKNVEES-----KCPSPKPKDPTPKECDAGACPETYSWKT-KFSECSVTCGTGTKTLEPYCVKDSDQSTSNEVLCDPAKKP 911
++ CN + CP A W W+ CS CG G K R +YC DG+ ++ C KP C CP + G W+QCS SC G + R C ++G C P C P W+ + EC+KTC G + VVC D D+ +V + CD SK+P D ++C+ + C+ YVW + CSVTCGKG L+ +++ G K+N E S CP +P P+ C CP + +W+ + CSV+CG G C+ + DQ + LC KP
Sbjct: 1431 REQCNTHACPHDAAWSTGPWSSCSVSCGRGHKQRNVYCMAKDGS----HLESDYCKHLAKPHG---HRKCRGGRCPKWKA-GAWSQCSVSCGRGVQQRHVGC----QIGTHKIARETECNPYTRPESERDCQGPRCPLYTWRAEEWQECTKTCGEGSRYRKVVCVD-DNKNEVHGARCDVSKRP----VDRESCSLQPCE-YVWITGEWSECSVTCGKGYKQRLVSCSEIYTG---KENYEYSYQTTINCPGTQP--PSVHPCYLRDCPVSATWRVGNWGSCSVSCGVGVMQRSVQCLTNEDQPSH---LCHTDLKP 1721 The following BLAST results are available for this feature:
BLAST of TCONS_00000233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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