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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000231 ID=TCONS_00000231|Name=TCONS_00000231|organism=Clytia hemisphaerica|type=transcript|length=2658bp
GGCTTATACTTTTCTGTGTTATTGTTGTAATGCTCGAGTTTTCATCCCCC
ATGCCTTATTTtataaagaattattttatgatattttttttttgtagatg
AATCCTCAAACAAATACTAACTCTAACAACACACCCAGCAGCATTCTCTA
TGAGCTGgctaaaagtaacaaaatgACCACCAACTATCAGGTGGTCAGTG
AAACTGGACCAGCACATCAAAAAACGTACAAGGTTCACCTACATGTTGGC
CATGCTGGACCATTCGAAGGAGTTGGAAGTAGTTTGAAGATGGCTCGCAA
TGCCGCTGCTTCTAGGGCATTATCTGATAGTTTCCCTGGATTTCACATCA
ACCCTACTGTTGAGTTGAATATTTTATCTATGAAGAGTCGTGAAGTTGCT
GTCTATCGGGAATTGGAGAGTATGTCTTTGCCAGGTTCAACTACCTCACG
ACATGATCAATATGATAGCTTATTTCTGTCACAACAATACCACAGTGGGC
TGATGCACCGTGGTGGACCCCGAATGAACCACCATAAACAACGCCGTCTA
TGGAGAATGTCTGTAACAATCTGTGGCCGAACCTATATTGGTGAAGGCCA
CACAAAATCAGAAGCACGGTTTAATGCTGCAGCCCATGCTTTGAGGGAAC
TGAAACAGATTTTGTTAGAAAAAGCCAAACTGGTTGAACTTGAGATGTCA
AAACAAAAGCAGGCAGCTGCTCAGAATGGAACTGAAGGCAACCCTGAAAA
GCCAAAAGCACCATGTTTCGTTTCTAAACTTCATGAACTGGCCAACAAAC
ATCATATggaaatcgattttaaactgaTGAATGAGTCAGGACCACCTCAT
GTTCGCGTCTTTCACATCAATTGTAAAGTGGGCGATCACCAAATAATagg
GCAAGGTATTGGCAAGAAGTCGGCAAAGAATGATGCTGCACAAAAAAtgt
tacaaattttgaaagaacttCCCGAACCTGAAAAGAAGAAACCTGGTAAA
GATTTCTTGAACTTCTTTATTTCGTCTAATAATCTGCACTTTCTGTTTTT
ACTGTAATAATGTAATAATGTACAGAAAAGATattaagaaaatttacaaa
CTGTCTAGAAAATAAAGCATTTCAATCTGTGCAGTTGTCAGCCAATCAAA
CAGTTTGtttattagattaaaagatATCTCTGCTACAAATCACACCAGAG
AATATCTGTgtatttaaaagttttcttgACTGTTCAAATCTTATGGAACG
CACGGTATAGGGATCTACgttaaaaatggatttttggAATCATAAACTGA
TTACCCCTTCAAAATGTGCCAAAACATgtataatttcagaaaaagtaGAA
CAATTTCGGTAGAAACCTTTTTTGACTTCCCTACCGGGGCCTTTAAGGCC
ACGCCCACCTCGGAATNCCCCAATATCACAAGTCATTGGACTTTACTGCT
CCCCAATATCACAAGTTTTTTGACTGTACTGTTTCATACTCTTGACCTTG
TAAAGGAGAGTTGAGTTCCAGTGTTAGTGATTTACTATCATCCCTCTTAC
CCCCAATTCCATGTATAACATTTCTAAGATCTCCAATAGTTGTCTAAGAG
CAACAACGTCAATACTGAGGTAAGAGCTCAAGTTTTCAACATACTCTTCT
NTaagaattctcaaaaacctatcaagttacccctcatttgaaaggtaatT
TAATGTAGattgagaaaaacatcatgacTATGCATCAAAAATGAAGTGAT
AGGTTGTAGAGTACATTACATTGCTCTTGAAAGAGGCTTTTTTAGTGTAA
TCGTGTAATGTCTtaaaaaattcatacttttGCAATTAATTCNCATGTAA
TTTTGGCATATTTCACTTCATTATACATTCTTTTGTTCTTAAGTTTATCA
TCCAAGTTTGTTTCTACATACTTCTTAAGTAATTTCTTCTTCTGAGTTAT
ATGGGCCTGAGATAAGTCTCCAATAATNgttcattatattttttggaaga
CCCACATGAAATAAACATAAGTGCTTATTTTCTACTGATATCATACATTT
TGAATCTACAggatcattttaaaaatttaaaaactataaAACCAANTGAC
TCTTCACTCAAACTTGCCATTTCTTTTTCAGTAAAGGCTTCAGTTTTCTG
CTCCTTGACTTTATCAGCCTATTCAAGTTTAATTACCGTGATTTCCAGTG
ATTTCTTTGGAGggttttataaactttttaaagttatttgGATTTGTTTG
CTCAAGAATGTCATGTTTTTATTGAGTACCATTTTCTTCATACATGTACT
TANAGAAGACCAAAGACTCTGGTATTGATCCCAGTTTGAATGCAGTATCA
TACCTCCAGTGTATGATGAACATGAGAAAAGAGTCACCACCTGTTTACAC
ACTCAAAGCTGATGCTGGACCAACACAAAAAGGCTTGATGAGATTCCAAA
TCGAGGCTTCATTGGAGGATTTCAAAGCCATTGGATATGGTCAAACAAAG
AAAGCAGCCAAAACAAATTCAGCAACTAACCTATTGAAATGTCTTGGTAT
TGATTTAATCGAGTTGAGAAAAGAAAAGGGTGTAGCCAAGGTATGGTTTT
GAATTCTATTATTCTAGTCTGGTTGTTTtaattagactagagtctacttc
tgattGAA Run BLAST on NCBI transcript from alignment at sc0000001:2015469..2021564- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000231 ID=TCONS_00000231|Name=TCONS_00000231|organism=Clytia hemisphaerica|type=transcript|length=6096bp|location=Sequence derived from alignment at sc0000001:2015469..2021564- (Clytia hemisphaerica)
GGCTTATACTTTTCTGTGTTATTGTTGTAATGCTCGAGTTTTCATCCCCC
ATGCCTTATTTTATAAAGAATTATTTTATGATATTTTTTTTTTGTAGATG
AATCCTCAAACAAATACTAACTCTAACAACACACCCAGCAGCATTCTCTA
TGAGCTGGCTAAAAGTAACAAAATGACCACCAACTATCAGGTGGTCAGTG
AAACTGGACCAGCACATCAAAAAACGTACAAGGTTCACCTACATGTTGGC
CATGCTGGACCATTCGAAGGAGTTGGAAGTAGTTTGAAGATGGCTCGCAA
TGCCGCTGCTTCTAGGGCATTATCTGATAGTTTCCCTGGATTTCACATCA
ACCCTACTGTTGAGTTGAATATTTTATCTATGAAGAGTCGTGAAGTTGCT
GTCTATCGGGAATTGGAGAGTATGTCTTTGCCAGGTTCAACTACCTCACG
ACATGATCAATATGATAGCTTATTTCTGTCACAACAATACCACAGTGGGC
TGATGCACCGTGGTGGACCCCGAATGAACCACCATAAACAACGCCGTCTA
TGGAGAATGTCTGTAACAATCTGTGGCCGAACCTATATTGGTGAAGGCCA
CACAAAATCAGAAGCACGGTTTAATGCTGCAGCCCATGCTTTGAGGGAAC
TGAAACAGATTTTGTTAGAAAAAGCCAAACTGGTTGAACTTGAGATGTCA
AAACAAAAGCAGGCAGCTGCTCAGAATGGAACTGAAGGCAACCCTGAAAA
GCCAAAAGCACCATGTTTCGTTTCTAAACTTCATGAACTGGCCAACAAAC
ATCATATGGAAATCGATTTTAAACTGATGAATGAGTCAGGACCACCTCAT
GTTCGCGTCTTTCACATCAATTGTAAAGTGGGCGATCACCAAATAATAGG
TTTGTTCTTAAAAAATTTATATACAGGTTGCCTATATGTAATCGAATCGA
ACTGATGTAAAGTTTATTTCAATCGAAGGCAAAAGCTTTTAACAATGAAG
GGTGATAAATAATAAATAATAATTCTACAACCACCCATTGCTGGGTATGG
TTGGACATAGAGCCATAACTCTCGTCTGTGAGGCCTACTCACTTCTGAGA
GCCATGACTCTATGTCGAGCTATCAAAATTTTAGAAATTAAGTTTTCTTG
CTTAAGGCAAGAGTGAAGTTGCTAAACTGTTGCTAAATTTTTGTTGTTGT
CGAATGATGCAGAAGTTTTCCTGTACAACTCCCTGTATAAAAGAAAGAGA
TTAGCCTAATTTGGTACATATTGTTATTCTTTCTCAAGATTAGATTATAG
CTGTATTATCTTTGCCTTGAAGTCTTAAAACACTTACTGTAGTAATTTTG
AACTTTTAAAGTCTTGAATCTTCCAAATTGTTTACTTCCAGGATGACTTT
AATTCACCTTAAAAAATATCTTTATATATTTAACATTAGACTACTTTGAT
ATTTTTTCAGGGCAAGGTATTGGCAAGAAGTCGGCAAAGAATGATGCTGC
ACAAAAAATGTTACAAATTTTGAAAGAACTTCCCGAACCTGAAAAGAAGA
AACCTGGTAAAGATTTCTTGAACTTCTTTATTTCGTCTAATAATCTGCAC
TTTCTGTTTTTACTGTAATAATGTAATAATGTACAGAAAAGATATTAAGA
AAATTTACAAACTGTCTAGAAAATAAAGCATTTCAATCTGTGCAGTTGTC
AGCCAATCAAACAGTTTGTTTATTAGATTAAAAGATATCTCTGCTACAAA
TCACACCAGAGAATATCTGTGTATTTAAAAGTTTTCTTGACTGTTCAAAT
CTTATGGAACGCACGGTATAGGGATCTACGTTAAAAATGGATTTTTGGAA
TCATAAACTGATTACCCCTTCAAAATGTGCCAAAACATGTATAATTTCAG
AAAAAGTAGAACAATTTCGGTAGAAACCTTTTTTGACTTCCCTACCGGGG
CCTTTAAGGCCACGCCCACCTCGGAATNCCCCAATATCACAAGTCATTGG
ACTTTACTGCTCCCCAATATCACAAGTTTTTTGACTGTACTGTTTCATAC
TCTTGACCTTGTAAAGGAGAGTTGAGTTCCAGTGTTAGTGATTTACTATC
ATCCCTCTTACCCCCAATTCCATGTATAACATTTCTAAGATCTCCAATAG
TTGTCTAAGAGCAACAACGTCAATACTGAGGTAAGAGCTCAAGTTTTCAA
CATACTCTTCTNTAAGAATTCTCAAAAACCTATCAAGTTACCCCTCATTT
GAAAGGTAATTTAATGTAGATTGAGAAAAACATCATGACTATGCATCAAA
AATGAAGTGATAGGTTGTAGAGTACATTACATTGCTCTTGAAAGAGGCTT
TTTTAGTGTAATCGTGTAATGTCTTAAAAAATTCATACTTTTGCAATTAA
TTCNCATGTAATTTTGGCATATTTCACTTCATTATACATTCTTTTGTTCT
TAAGTTTATCATCCAAGTTTGTTTCTACATACTTCTTAAGTAATTTCTTC
TTCTGAGTTATATGGGCCTGAGATAAGTCTCCAATAATNGTTCATTATAT
TTTTTGGAAGACCCACATGAAATAAACATAAGTGCTTATTTTCTACTGAT
ATCATACATTTTGAATCTACAGGATCATTTTAAAAATTTAAAAACTATAA
AACCAANTGACTCTTCACTCAAACTTGCCATTTCTTTTTCAGTAAAGGCT
TCAGTTTTCTGCTCCTTGACTTTATCAGCCTATTCAAGTTTAATTACCGT
GATTTCCAGTGATTTCTTTGGAGGGTTTTATAAACTTTTTAAAGTTATTT
GGATTTGTTTGCTCAAGAATGTCATGTTTTTATTGAGTACCATTTTCTTC
ATACATGTACTTANAGAAGACCAAAGACTCTGGTATTGATCCCAGTTTGA
ATGCAGTATCATACCTCCAGTGTATGATGAACATGAGAAAAGAGTCACCA
CCTGTTTACACACTCAAAGCTGATGCTGGACCAACACAAAAAGGCTTGAT
GAGATTCCAAATCGAGGTACCATTCCCTTTGTTATAGCTTTCTTTGGTCC
TGTCCTTTATAGATTTATAGGTTTGTGTATACGTTTGTTGATTAAGAATC
ACTCATCCTTTAATATTGTTGTATACTACTTTAGGACATATTTTATCCTC
GAAAAAGTTTTGGCTTCTTATTTTATTGACGTAACGTCCGAAATTGTTAA
AGGGATAATATAATGATATTTTACCTGTAAATTCCGTTCAAGGTCCTGAG
CAAAATCTCTGAATCGTTCTGCCTTTGTTTGACTTTTAGCAGGAAACAAA
TATAATTCTAACGTAAAAACCGTGTGAAAACCCATCTTTATAATTTCACA
TAGTTGTTTCTCGACTTTGGAAAGGAGTTAAGCAAAAAGATTTGAAGGTT
ATACTCAGGGCCATGTGAGATATCTACAGGCCAAATATCTCAAACCATCT
GATCATCCCTTTAAAAGGCATTATCAATTGTAATTCACGTGTTAAATTTT
TTAATACATGACACTCATGACATAGGGGTTCCGCATGGTTGCAAAGAAGA
GCGCTTAGTCGACGCTCTTTAATTCGATTTCCAAGGGGAAATTGGATTTT
CATCGAATAAGAGAGCGTGTCGAATAGTAGAGCGTTGTGTTTATCAGTGT
TTCTTATTGATGGTAGCCTTCAATGTTATCGAAGGGAGTGTCAACTGCGA
ATGGACTTTAAAATCTCCTTTAATTTCATGTACAGGCTTCATTGGAGGAT
TTCAAAGCCATTGGATATGGTCAAACAAAGAAAGCAGCCAAAACAAATTC
AGCAACTAACCTATTGAAATGTCTTGGTATTGATTTAATCGAGTTGAGAA
AAGAAAAGGGTGTAGCCAAGGTATGGTTTTGAATTCTATTATTCTAGTCT
GGTTGTTTTAATTAGACTAGAGTCTACTTCTGATTGAACTTTGCTTGCTG
ATTTTTTTGATGACGCTGAGTCCAGTGATCAAGTTATATGAAAGTCATAA
GTGGCCCTGGGTTAACCTATTCCTTATTCATACCAGTGCTTTTCGAAAGA
TTTCTCGCCGTTCATGCTATTCATTATTATCAACTTTATCATCCCTTCCG
TGGTATCTAGAACAATGCTATGAAGCGTTTGGGTGTATTAAAAGTAAAAG
CTTTCGTACTAAAGATGCCTAGCTTGCTTAATTTTGTGAAATTAGAAATT
GTTTCGAGTTATTTTTATGTTGAAGATGACGATTTACAGGTCAATATTGC
CTTTTGTACTAAAAATAAATTTCGTTTATTAACAGGTGGAAAGTGACGAT
GAAGATGAGAGTGAAATTATAAATATTGCACTCGATGCCCTCATGACGGA
AACCGCCAACTTGAACCGGGCACCCGGAACTCCGGTCAAGCACAAAATCC
AACTTAGCAAAAGCAAACCAAGTGAGGTGGACCAATCTTTTCCGGCTGCG
TCTGCCAAACAAAAAGTTGAATACATTGCTCGCAAGGAAGGATTTCAAGT
TTTGTACAATGATTTCGTCAATGGGGTTTGTATATTCGATTTAATACTAC
AGTTGAGTCTCTTTAATTCGAAAGTCTCCTTAACTCGAACAAATTTGTGT
TCCCCGTGCGTGTTCAAGTTATGGAGAGTCCATTGTATTTTCCAAAACTC
ATACTGATATACGTCTATGTAGGTCCATGTCTTTTGGGATCCTAAAGATC
TAACTGCCCTAAATTATCAGATAGTAATTATGCCTGGGCTAGCACTAAAC
TTTAGTTCATGCCATGTGATAAATTCTGATAATGCCAGATGCCAAAACCT
AAGAGTGGAAAAAGTAAGAGTAGATTAAGAACGACTAGGAACTCGGATTT
CTCTTCACGTTTATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGC
GATGCATTGTGGGATTGTTTCGGGGTATTACAATAGAAATCTCTTAGGAA
TTTCTCGAGGGAATTCTTTTGTAATACCCCCGAAACAATCCCACATTGCA
TCGATGTTTCAAAAAAATAAAAAGACTCCGATAAGGTCTATACTACTCAA
TCTTCTCTTCCTCCCAGGGTAAACCGGGTCAAAGCGACAACAATGAGTTT
TCATCTTCACTGGCCGTTTTCACGTCACCGCCGGAAGTTTTCCACGGAGC
CGGTCAAACTGTAGAAGCGTCGAGAGAAGAGGCCGCGCGGAAGGCCTTCA
ATTCTATGCAAGCTGTTCCAGGCGCCAACGATTCGGCCGCTTCACCTAAT
AGTAAATAAGAAACGGTACATTTCTATTTCGTTCTCTCTCCTTGTTATAT
TTTTTTCTCTCCATTCATTTTTCCCTTTTTTTCCTTTCCTTCAACAAGAT
CACTTTTTTAGTTTANTATATTTTTTTCTCTCCTTTCATTTTTCCCTTTT
TTTCCTTTCCTTCAACAAGATCACTTTTTTAGTTTAATCTGCAGAATCAT
GATGGGGTACTCGGTTCCTTTCAAGATTAATGTCAGCCTTTTGGACCTCG
ATTCATCAAATGCCAACATCTTCTAATGACTTCTTATAGAAAACCTTTGG
TTTTGTAGATCTTTTTTCGGCACATATCATCAAATTAAGATGTTATTTTA
ACTTCATGCTTTTCTTTTAATCTTCTTTCGTTCAGAATTGGATCTTGAAA
GTACTTGAAATCGAAGAATCATGACATATGCAAAAAAGTATTAGGATCAG
TCGGGTAACTTTTTGTCATTTGTTATTTTTGTTTGTTTTTTTCTGCTCTG
TACTACAGCTTGTTTCAAAGTTGATTTTTGAAACAGTGACTGATNCGTTT
ATCAGTGTTTCTTATTGATGGTAGCCTTCAATGTTATCGAAGGGAGTGTC
AACTGCGAATGGACTTTAAAATCTCCTTTAATTTCATGTACAGGCTTCAT
TGGAGGATTTCAAAGCCATTGGATATGGTCAAACAAAGAAAGCAGCCAAA
ACAAATTCAGCAACTAACCTATTGAAATGTCTTGGTATTGATTTAATCGA
GTTGAGAAAAGAAAAGGGTGTAGCCAAGGTATGGTTTTGAATTCTATTAT
TCTAGTCTGGTTGTTTTAATTAGACTAGAGTCTACTTCTGATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00000231-exon-sc0000001-1575043694:2020666..2021564 | TCONS_00000231-exon-sc0000001-1575043694:2020666..2021564 | Clytia hemisphaerica | exon |
| TCONS_00000231-exon-sc0000001-1575043694:2018549..2020104 | TCONS_00000231-exon-sc0000001-1575043694:2018549..2020104 | Clytia hemisphaerica | exon |
| TCONS_00000231-exon-sc0000001-1575043694:2015469..2015671 | TCONS_00000231-exon-sc0000001-1575043694:2015469..2015671 | Clytia hemisphaerica | exon |
| TCONS_00000231-exon-sc0000001-1510915933:2020666..2021564 | TCONS_00000231-exon-sc0000001-1510915933:2020666..2021564 | Clytia hemisphaerica | exon |
| TCONS_00000231-exon-sc0000001-1510915933:2018549..2020104 | TCONS_00000231-exon-sc0000001-1510915933:2018549..2020104 | Clytia hemisphaerica | exon |
| TCONS_00000231-exon-sc0000001-1510915933:2015469..2015671 | TCONS_00000231-exon-sc0000001-1510915933:2015469..2015671 | Clytia hemisphaerica | exon |
| TCONS_00000231-exon-sc0000001-1491911889:2020666..2021564 | TCONS_00000231-exon-sc0000001-1491911889:2020666..2021564 | Clytia hemisphaerica | exon |
| TCONS_00000231-exon-sc0000001-1491911889:2018549..2020104 | TCONS_00000231-exon-sc0000001-1491911889:2018549..2020104 | Clytia hemisphaerica | exon |
| TCONS_00000231-exon-sc0000001-1491911889:2015469..2015671 | TCONS_00000231-exon-sc0000001-1491911889:2015469..2015671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000001 | supercontig | sc0000001:2015469..2021564 - |
Blast
BLAST of TCONS_00000231 vs. Swiss-Prot (Human)
Match: STAU2 (Double-stranded RNA-binding protein Staufen homolog 2 OS=Homo sapiens GN=STAU2 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 8.430e-29 Identity = 88/287 (30.66%), Postives = 147/287 (51.22%), Query Frame = 2
Query: 143 ILYELAKSNKMTTNYQVVSETGPAHQKTYKVHLHVGHAGPFEGVGSSLKMARNAAASRALSDSF----------------PGFHINPTVELNILSMKSREVAVYRELESMSLPGSTTSRHDQYDSLFLSQQYHSGLMHRGGPRMNHHKQRRLWRMSVTICGRTYIGEGHTKSEARFNAAAHALRELKQILLEKAKLVELEMSKQKQAAAQNGTEGNPEKPKAPCFVSKLHELANKHHMEIDFKLMNESGPPHVRVFHINCKVGDHQIIGQGIGKKSAKNDAAQKMLQ 955
++ ELA+ N++ Y++++E GPAH K + V L +G +E GSS+K A+ A A++AL++S PG I PTVELN L+MK E A+YR L+ P + + + ++ +Q+YH + +++ + +T+ + GEG T+ AR NAA AL+ L+ + E S Q ++G + + +K +S + E+A K +M + F+++ ESGPPH++ F VG+ G+G KK +K AA +LQ
Sbjct: 12 LVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQT-WESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG-SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYN--FRGMY-NQRYHCPV-------------PKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIP-------ERSPQN---GESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQ 270
The following BLAST results are available for this feature:
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