Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000229
Unique NameTCONS_00000229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000229 ID=TCONS_00000229|Name=TCONS_00000229|organism=Clytia hemisphaerica|type=transcript|length=4312bp
GGCTTATACTTTTCTGTGTTATTGTTGTAATGCTCGAGTTTTCATCCCCC
ATGCCTTATTTtataaagaattattttatgatattttttttttgtagatg
AATCCTCAAACAAATACTAACTCTAACAACACACCCAGCAGCATTCTCTA
TGAGCTGgctaaaagtaacaaaatgACCACCAACTATCAGGTGGTCAGTG
AAACTGGACCAGCACATCAAAAAACGTACAAGGTTCACCTACATGTTGGC
CATGCTGGACCATTCGAAGGAGTTGGAAGTAGTTTGAAGATGGCTCGCAA
TGCCGCTGCTTCTAGGGCATTATCTGATAGTTTCCCTGGATTTCACATCA
ACCCTACTGTTGAGTTGAATATTTTATCTATGAAGAGTCGTGAAGTTGCT
GTCTATCGGGAATTGGAGAGTATGTCTTTGCCAGGTTCAACTACCTCACG
ACATGATCAATATGATAGCTTATTTCTGTCACAACAATACCACAGTGGGC
TGATGCACCGTGGTGGACCCCGAATGAACCACCATAAACAACGCCGTCTA
TGGAGAATGTCTGTAACAATCTGTGGCCGAACCTATATTGGTGAAGGCCA
CACAAAATCAGAAGCACGGTTTAATGCTGCAGCCCATGCTTTGAGGGAAC
TGAAACAGATTTTGTTAGAAAAAGCCAAACTGGTTGAACTTGAGATGTCA
AAACAAAAGCAGGCAGCTGCTCAGAATGGAACTGAAGGCAACCCTGAAAA
GCCAAAAGCACCATGTTTCGTTTCTAAACTTCATGAACTGGCCAACAAAC
ATCATATggaaatcgattttaaactgaTGAATGAGTCAGGACCACCTCAT
GTTCGCGTCTTTCACATCAATTGTAAAGTGGGCGATCACCAAATAATagg
GCAAGGTATTGGCAAGAAGTCGGCAAAGAATGATGCTGCACAAAAAAtgt
tacaaattttgaaagaacttCCCGAACCTGAAAAGAAGAAACCTGGTAAA
GATTTCTTGAACTTCTTTATTTCGTCTAATAATCTGCACTTTCTGTTTTT
ACTGTAATAATGTAATAATGTACAGAAAAGATattaagaaaatttacaaa
CTGTCTAGAAAATAAAGCATTTCAATCTGTGCAGTTGTCAGCCAATCAAA
CAGTTTGtttattagattaaaagatATCTCTGCTACAAATCACACCAGAG
AATATCTGTgtatttaaaagttttcttgACTGTTCAAATCTTATGGAACG
CACGGTATAGGGATCTACgttaaaaatggatttttggAATCATAAACTGA
TTACCCCTTCAAAATGTGCCAAAACATgtataatttcagaaaaagtaGAA
CAATTTCGGTAGAAACCTTTTTTGACTTCCCTACCGGGGCCTTTAAGGCC
ACGCCCACCTCGGAATNCCCCAATATCACAAGTCATTGGACTTTACTGCT
CCCCAATATCACAAGTTTTTTGACTGTACTGTTTCATACTCTTGACCTTG
TAAAGGAGAGTTGAGTTCCAGTGTTAGTGATTTACTATCATCCCTCTTAC
CCCCAATTCCATGTATAACATTTCTAAGATCTCCAATAGTTGTCTAAGAG
CAACAACGTCAATACTGAGGTAAGAGCTCAAGTTTTCAACATACTCTTCT
NTaagaattctcaaaaacctatcaagttacccctcatttgaaaggtaatT
TAATGTAGattgagaaaaacatcatgacTATGCATCAAAAATGAAGTGAT
AGGTTGTAGAGTACATTACATTGCTCTTGAAAGAGGCTTTTTTAGTGTAA
TCGTGTAATGTCTtaaaaaattcatacttttGCAATTAATTCNCATGTAA
TTTTGGCATATTTCACTTCATTATACATTCTTTTGTTCTTAAGTTTATCA
TCCAAGTTTGTTTCTACATACTTCTTAAGTAATTTCTTCTTCTGAGTTAT
ATGGGCCTGAGATAAGTCTCCAATAATNgttcattatattttttggaaga
CCCACATGAAATAAACATAAGTGCTTATTTTCTACTGATATCATACATTT
TGAATCTACAggatcattttaaaaatttaaaaactataaAACCAANTGAC
TCTTCACTCAAACTTGCCATTTCTTTTTCAGTAAAGGCTTCAGTTTTCTG
CTCCTTGACTTTATCAGCCTATTCAAGTTTAATTACCGTGATTTCCAGTG
ATTTCTTTGGAGggttttataaactttttaaagttatttgGATTTGTTTG
CTCAAGAATGTCATGTTTTTATTGAGTACCATTTTCTTCATACATGTACT
TANAGAAGACCAAAGACTCTGGTATTGATCCCAGTTTGAATGCAGTATCA
TACCTCCAGTGTATGATGAACATGAGAAAAGAGTCACCACCTGTTTACAC
ACTCAAAGCTGATGCTGGACCAACACAAAAAGGCTTGATGAGATTCCAAA
TCGAGGCTTCATTGGAGGATTTCAAAGCCATTGGATATGGTCAAACAAAG
AAAGCAGCCAAAACAAATTCAGCAACTAACCTATTGAAATGTCTTGGTAT
TGATTTAATCGAGTTGAGAAAAGAAAAGGGTGTAGCCAAGGTGGAAAGTG
ACGATGAAGATGAGAGTGAAATTATAAATATTGCACTCGATGCCCTCATG
ACGGAAACCGCCAACTTGAACCGGGCACCCGGAACTCCGGTCAAGCACAA
AATCCAACTTAGCAAAAGCAAACCAAGTGAGGTGGACCAATCTTTTCCGG
CTGCGTCTGCcaaacaaaaagttgaatacattGCTCGCAAGGAAGGATTT
CAAGTTTTGTACAATGATTTCGTCAATGGGGGTAAACCGGGTCAAAGCGA
CAACAATGAGTTTTCATCTTCACTGGCCGTTTTCACGTCACCGCCGGAAG
TTTTCCACGGAGCCGGTCAAACTGTAGAAGCGTCGAGAGAAGAGGCCGCG
CGGAAGGCCTTCAATTCTATGCAAGCTGTTCCAGGCGCCAACGATTCGGC
CGCTTCACCTAATAGTAAATAAGAAACGAATTGGATCTTGAAAGTACTTG
AAATCGAAGAATCATGACATATGCAAAAAAGTATTAGGATCAGTCGGGTA
ACTTTTTGtcatttgttatttttgtttgtttttttctgctcTGTACTACA
GCTTGTTTCAAAGTTGATTTTTGAAACAGTGACTGATGAACATTAAAACA
TTGTTCAAAGGTCTCTGTATTTTTATTCTGTCGTTCAACTCGAGAGTTGG
GTTGAACTAGTTTGCTTACACTTAACCTCGTCCCCAGGGTATTATCAGCT
CACTATCACAAACGTGGGAAGAgaattctctggcgtccatcaatAACACA
AATGggtaaagcctgggatacacggggacgaggttggttAAAATGTGGAC
ATTTATTTATAACGTAAACCATGCGCGACTGCCTCGATTTATTTATTACA
ATGAATTTGATAAGGTGAAAAGAGAAGCTTAAACTGTTAAAGTAATCCTG
TGTTTTGGAAATTCATTATTCTTATTGACCTATTTCTTGTCTGGCCAGTG
CAATGGCTACGTTATATCTGTCCTTGCTGCAAGAAATTTTGACAAGAACT
GGACTTAACCAGTTCTGCCAAAGTTTCTTCCTGCCGAATTTTCTAATATG
AAGTTAGGCTTGTGTGTTTTTGACACAAGTTTGACTATTTGGTTTTATTT
GTGCTTGTTTGTAATATTTTGGTATAgtaagataatattttttcgttttt
gttaTGTTGTGTTATTTTGAAATGAAGGGTCTAGATGAAGCACCTGGCCA
AAGAGAGAATCTTCGATGAGAATGATCGATGTGCAATTTCTTACAATATA
CATTTACCTTTCATTATGAAATGAAACTCAGAaacagcaaaagaaaaaaa
atgataaaaaagacCCGAGTCTAAACAAAAATATACATGTTCTTATTCAA
GGACATGGTGTAATTATGTGAAAGTTTGAAGTCAATAATCTTCGTTTCTC
AATCCCCTATTCCATATGGAAAATGTTCTTTCATGGTCAGGAATCCCATC
TACACTATtgtcattttcttaaaaagattCAACAGTCAactctccttaat
tcgaacttTCTGTAATTCCTTCGAAAAATATTATCCTCTTTGGCTAGAAA
GTCCTCCAAAATAATACTCTCagtaattcaaatctttctgtaattcgaag
agATCCCTTTAAAATCGAATTAAAGGGTGTCGACTGGttcattaaatttt
attaatttacaTATTTTGCAAATTGTATTATTTTTCTCCTGAAACAGCTT
TTTTACTATGCG
Run BLAST on NCBI

transcript from alignment at sc0000001:2012904..2021564-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000229 ID=TCONS_00000229|Name=TCONS_00000229|organism=Clytia hemisphaerica|type=transcript|length=8661bp|location=Sequence derived from alignment at sc0000001:2012904..2021564- (Clytia hemisphaerica)
GGCTTATACTTTTCTGTGTTATTGTTGTAATGCTCGAGTTTTCATCCCCC ATGCCTTATTTTATAAAGAATTATTTTATGATATTTTTTTTTTGTAGATG AATCCTCAAACAAATACTAACTCTAACAACACACCCAGCAGCATTCTCTA TGAGCTGGCTAAAAGTAACAAAATGACCACCAACTATCAGGTGGTCAGTG AAACTGGACCAGCACATCAAAAAACGTACAAGGTTCACCTACATGTTGGC CATGCTGGACCATTCGAAGGAGTTGGAAGTAGTTTGAAGATGGCTCGCAA TGCCGCTGCTTCTAGGGCATTATCTGATAGTTTCCCTGGATTTCACATCA ACCCTACTGTTGAGTTGAATATTTTATCTATGAAGAGTCGTGAAGTTGCT GTCTATCGGGAATTGGAGAGTATGTCTTTGCCAGGTTCAACTACCTCACG ACATGATCAATATGATAGCTTATTTCTGTCACAACAATACCACAGTGGGC TGATGCACCGTGGTGGACCCCGAATGAACCACCATAAACAACGCCGTCTA TGGAGAATGTCTGTAACAATCTGTGGCCGAACCTATATTGGTGAAGGCCA CACAAAATCAGAAGCACGGTTTAATGCTGCAGCCCATGCTTTGAGGGAAC TGAAACAGATTTTGTTAGAAAAAGCCAAACTGGTTGAACTTGAGATGTCA AAACAAAAGCAGGCAGCTGCTCAGAATGGAACTGAAGGCAACCCTGAAAA GCCAAAAGCACCATGTTTCGTTTCTAAACTTCATGAACTGGCCAACAAAC ATCATATGGAAATCGATTTTAAACTGATGAATGAGTCAGGACCACCTCAT GTTCGCGTCTTTCACATCAATTGTAAAGTGGGCGATCACCAAATAATAGG TTTGTTCTTAAAAAATTTATATACAGGTTGCCTATATGTAATCGAATCGA ACTGATGTAAAGTTTATTTCAATCGAAGGCAAAAGCTTTTAACAATGAAG GGTGATAAATAATAAATAATAATTCTACAACCACCCATTGCTGGGTATGG TTGGACATAGAGCCATAACTCTCGTCTGTGAGGCCTACTCACTTCTGAGA GCCATGACTCTATGTCGAGCTATCAAAATTTTAGAAATTAAGTTTTCTTG CTTAAGGCAAGAGTGAAGTTGCTAAACTGTTGCTAAATTTTTGTTGTTGT CGAATGATGCAGAAGTTTTCCTGTACAACTCCCTGTATAAAAGAAAGAGA TTAGCCTAATTTGGTACATATTGTTATTCTTTCTCAAGATTAGATTATAG CTGTATTATCTTTGCCTTGAAGTCTTAAAACACTTACTGTAGTAATTTTG AACTTTTAAAGTCTTGAATCTTCCAAATTGTTTACTTCCAGGATGACTTT AATTCACCTTAAAAAATATCTTTATATATTTAACATTAGACTACTTTGAT ATTTTTTCAGGGCAAGGTATTGGCAAGAAGTCGGCAAAGAATGATGCTGC ACAAAAAATGTTACAAATTTTGAAAGAACTTCCCGAACCTGAAAAGAAGA AACCTGGTAAAGATTTCTTGAACTTCTTTATTTCGTCTAATAATCTGCAC TTTCTGTTTTTACTGTAATAATGTAATAATGTACAGAAAAGATATTAAGA AAATTTACAAACTGTCTAGAAAATAAAGCATTTCAATCTGTGCAGTTGTC AGCCAATCAAACAGTTTGTTTATTAGATTAAAAGATATCTCTGCTACAAA TCACACCAGAGAATATCTGTGTATTTAAAAGTTTTCTTGACTGTTCAAAT CTTATGGAACGCACGGTATAGGGATCTACGTTAAAAATGGATTTTTGGAA TCATAAACTGATTACCCCTTCAAAATGTGCCAAAACATGTATAATTTCAG AAAAAGTAGAACAATTTCGGTAGAAACCTTTTTTGACTTCCCTACCGGGG CCTTTAAGGCCACGCCCACCTCGGAATNCCCCAATATCACAAGTCATTGG ACTTTACTGCTCCCCAATATCACAAGTTTTTTGACTGTACTGTTTCATAC TCTTGACCTTGTAAAGGAGAGTTGAGTTCCAGTGTTAGTGATTTACTATC ATCCCTCTTACCCCCAATTCCATGTATAACATTTCTAAGATCTCCAATAG TTGTCTAAGAGCAACAACGTCAATACTGAGGTAAGAGCTCAAGTTTTCAA CATACTCTTCTNTAAGAATTCTCAAAAACCTATCAAGTTACCCCTCATTT GAAAGGTAATTTAATGTAGATTGAGAAAAACATCATGACTATGCATCAAA AATGAAGTGATAGGTTGTAGAGTACATTACATTGCTCTTGAAAGAGGCTT TTTTAGTGTAATCGTGTAATGTCTTAAAAAATTCATACTTTTGCAATTAA TTCNCATGTAATTTTGGCATATTTCACTTCATTATACATTCTTTTGTTCT TAAGTTTATCATCCAAGTTTGTTTCTACATACTTCTTAAGTAATTTCTTC TTCTGAGTTATATGGGCCTGAGATAAGTCTCCAATAATNGTTCATTATAT TTTTTGGAAGACCCACATGAAATAAACATAAGTGCTTATTTTCTACTGAT ATCATACATTTTGAATCTACAGGATCATTTTAAAAATTTAAAAACTATAA AACCAANTGACTCTTCACTCAAACTTGCCATTTCTTTTTCAGTAAAGGCT TCAGTTTTCTGCTCCTTGACTTTATCAGCCTATTCAAGTTTAATTACCGT GATTTCCAGTGATTTCTTTGGAGGGTTTTATAAACTTTTTAAAGTTATTT GGATTTGTTTGCTCAAGAATGTCATGTTTTTATTGAGTACCATTTTCTTC ATACATGTACTTANAGAAGACCAAAGACTCTGGTATTGATCCCAGTTTGA ATGCAGTATCATACCTCCAGTGTATGATGAACATGAGAAAAGAGTCACCA CCTGTTTACACACTCAAAGCTGATGCTGGACCAACACAAAAAGGCTTGAT GAGATTCCAAATCGAGGTACCATTCCCTTTGTTATAGCTTTCTTTGGTCC TGTCCTTTATAGATTTATAGGTTTGTGTATACGTTTGTTGATTAAGAATC ACTCATCCTTTAATATTGTTGTATACTACTTTAGGACATATTTTATCCTC GAAAAAGTTTTGGCTTCTTATTTTATTGACGTAACGTCCGAAATTGTTAA AGGGATAATATAATGATATTTTACCTGTAAATTCCGTTCAAGGTCCTGAG CAAAATCTCTGAATCGTTCTGCCTTTGTTTGACTTTTAGCAGGAAACAAA TATAATTCTAACGTAAAAACCGTGTGAAAACCCATCTTTATAATTTCACA TAGTTGTTTCTCGACTTTGGAAAGGAGTTAAGCAAAAAGATTTGAAGGTT ATACTCAGGGCCATGTGAGATATCTACAGGCCAAATATCTCAAACCATCT GATCATCCCTTTAAAAGGCATTATCAATTGTAATTCACGTGTTAAATTTT TTAATACATGACACTCATGACATAGGGGTTCCGCATGGTTGCAAAGAAGA GCGCTTAGTCGACGCTCTTTAATTCGATTTCCAAGGGGAAATTGGATTTT CATCGAATAAGAGAGCGTGTCGAATAGTAGAGCGTTGTGTTTATCAGTGT TTCTTATTGATGGTAGCCTTCAATGTTATCGAAGGGAGTGTCAACTGCGA ATGGACTTTAAAATCTCCTTTAATTTCATGTACAGGCTTCATTGGAGGAT TTCAAAGCCATTGGATATGGTCAAACAAAGAAAGCAGCCAAAACAAATTC AGCAACTAACCTATTGAAATGTCTTGGTATTGATTTAATCGAGTTGAGAA AAGAAAAGGGTGTAGCCAAGGTATGGTTTTGAATTCTATTATTCTAGTCT GGTTGTTTTAATTAGACTAGAGTCTACTTCTGATTGAACTTTGCTTGCTG ATTTTTTTGATGACGCTGAGTCCAGTGATCAAGTTATATGAAAGTCATAA GTGGCCCTGGGTTAACCTATTCCTTATTCATACCAGTGCTTTTCGAAAGA TTTCTCGCCGTTCATGCTATTCATTATTATCAACTTTATCATCCCTTCCG TGGTATCTAGAACAATGCTATGAAGCGTTTGGGTGTATTAAAAGTAAAAG CTTTCGTACTAAAGATGCCTAGCTTGCTTAATTTTGTGAAATTAGAAATT GTTTCGAGTTATTTTTATGTTGAAGATGACGATTTACAGGTCAATATTGC CTTTTGTACTAAAAATAAATTTCGTTTATTAACAGGTGGAAAGTGACGAT GAAGATGAGAGTGAAATTATAAATATTGCACTCGATGCCCTCATGACGGA AACCGCCAACTTGAACCGGGCACCCGGAACTCCGGTCAAGCACAAAATCC AACTTAGCAAAAGCAAACCAAGTGAGGTGGACCAATCTTTTCCGGCTGCG TCTGCCAAACAAAAAGTTGAATACATTGCTCGCAAGGAAGGATTTCAAGT TTTGTACAATGATTTCGTCAATGGGGTTTGTATATTCGATTTAATACTAC AGTTGAGTCTCTTTAATTCGAAAGTCTCCTTAACTCGAACAAATTTGTGT TCCCCGTGCGTGTTCAAGTTATGGAGAGTCCATTGTATTTTCCAAAACTC ATACTGATATACGTCTATGTAGGTCCATGTCTTTTGGGATCCTAAAGATC TAACTGCCCTAAATTATCAGATAGTAATTATGCCTGGGCTAGCACTAAAC TTTAGTTCATGCCATGTGATAAATTCTGATAATGCCAGATGCCAAAACCT AAGAGTGGAAAAAGTAAGAGTAGATTAAGAACGACTAGGAACTCGGATTT CTCTTCACGTTTATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGC GATGCATTGTGGGATTGTTTCGGGGTATTACAATAGAAATCTCTTAGGAA TTTCTCGAGGGAATTCTTTTGTAATACCCCCGAAACAATCCCACATTGCA TCGATGTTTCAAAAAAATAAAAAGACTCCGATAAGGTCTATACTACTCAA TCTTCTCTTCCTCCCAGGGTAAACCGGGTCAAAGCGACAACAATGAGTTT TCATCTTCACTGGCCGTTTTCACGTCACCGCCGGAAGTTTTCCACGGAGC CGGTCAAACTGTAGAAGCGTCGAGAGAAGAGGCCGCGCGGAAGGCCTTCA ATTCTATGCAAGCTGTTCCAGGCGCCAACGATTCGGCCGCTTCACCTAAT AGTAAATAAGAAACGGTACATTTCTATTTCGTTCTCTCTCCTTGTTATAT TTTTTTCTCTCCATTCATTTTTCCCTTTTTTTCCTTTCCTTCAACAAGAT CACTTTTTTAGTTTANTATATTTTTTTCTCTCCTTTCATTTTTCCCTTTT TTTCCTTTCCTTCAACAAGATCACTTTTTTAGTTTAATCTGCAGAATCAT GATGGGGTACTCGGTTCCTTTCAAGATTAATGTCAGCCTTTTGGACCTCG ATTCATCAAATGCCAACATCTTCTAATGACTTCTTATAGAAAACCTTTGG TTTTGTAGATCTTTTTTCGGCACATATCATCAAATTAAGATGTTATTTTA ACTTCATGCTTTTCTTTTAATCTTCTTTCGTTCAGAATTGGATCTTGAAA GTACTTGAAATCGAAGAATCATGACATATGCAAAAAAGTATTAGGATCAG TCGGGTAACTTTTTGTCATTTGTTATTTTTGTTTGTTTTTTTCTGCTCTG TACTACAGCTTGTTTCAAAGTTGATTTTTGAAACAGTGACTGATNCGTTT ATCAGTGTTTCTTATTGATGGTAGCCTTCAATGTTATCGAAGGGAGTGTC AACTGCGAATGGACTTTAAAATCTCCTTTAATTTCATGTACAGGCTTCAT TGGAGGATTTCAAAGCCATTGGATATGGTCAAACAAAGAAAGCAGCCAAA ACAAATTCAGCAACTAACCTATTGAAATGTCTTGGTATTGATTTAATCGA GTTGAGAAAAGAAAAGGGTGTAGCCAAGGTATGGTTTTGAATTCTATTAT TCTAGTCTGGTTGTTTTAATTAGACTAGAGTCTACTTCTGATTGAACTTT GCTTGCTGATTTTTTTGATGACGCTGAGTCCAGTGATCAAGTTATATGAA AGTCATAAGTGGCCCTGGGTTAACCTATTCCTTATTCATACCAGTGCTTT TCGAAAGATTTCTCGCCGTTCATGCTATTCATTATTATCAACTTTATCAT CCCTTCCGTGGTATCTAGAACAATGCTATGAAGCGTTTGNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNTGCATCGATGTTTCAGAAAAATAAAAAAACTCCGATAAGGT CTATACTACTCAATCTTCTCTTCCTCCCAGGGTAAACCGGGTCAAAGCGA CAACAATGAGTTTTCATCTTCACTGGCCGTTTTCACGTCACCGCCGGAAG TTTTCCACGGAGCCGGTCAAACTGTAGAAGCGTCGAGAGAAGAGGCCGCG CGGAAGGCCTTCAATTCTATGCAAGCTGTTCCAGGCGCCAACGATTCGGC CGCTTCACCTAATAGTAAATAAGAAACGGTACATTTCTATTTCGTTCTCT CTCCTTGTTATATTTTTTTCTCTCCTTTCATTTTTCCCTTTTTTTCCTTT CCTTCAACAAGATCACTTTTTTAGTTTAATCTGCAGAATCATGATGGGGT ACTCGGTTCCTTTCAAGATTAATGTCAGCCTTTTGGACCTCGATTCATCA AATGCCAACATCTTCTAATGACTTCTTATAGAAAACCTTTGGTTTTGTAG ATCTTTTTTCGGCACATATCATCAAATTAAGATGTTATTTTAACTTCATG CTTTTCTTTTAATCTTCTTTCGTTCAGAATTGGATCTTGAAAGTACTTGA AATCGAAGAATCATGACATATGCAAAAAAGTATTAGGATCAGTCGGGTAA CTTTTTGTCATTTGTTATTTTTGTTTGTTTTTTTCTGCTCTGTACTACAG CTTGTTTCAAAGTTGATTTTTGAAACAGTGACTGATGAACATTAAAACAT TGTTCAAAGGTCTCTGTATTTTTATTCTGTCGTTCAACTCGAGAGTTGGG TTGAACTAGTTTGCTTACACTTAACCTCGTCCCCAGGGTATTATCAGCTC ACTATCACAAACGTGGGAAGAGAATTCTCTGGCGTCCATCAATAACACAA ATGGGTAAAGCCTGGGATACACGGGGACGAGGTTGGTTAAAATGTGGACA TTTATTTATAACGTAAACCATGCGCGACTGCCTCGATTTATTTATTACAA TGAATTTGATAAGGTGAAAAGAGAAGCTTAAACTGTTAAAGTAATCCTGT GTTTTGGAAATTCATTATTCTTATTGACCTATTTCTTGTCTGGCCAGTGC AATGGCTACGTTATATCTGTCCTTGCTGCAAGAAATTTTGACAAGAACTG GACTTAACCAGTTCTGCCAAAGTTTCTTCCTGCCGAATTTTCTAATATGA AGTTAGGCTTGTGTGTTTTTGACACAAGTTTGACTATTTGGTTTTATTTG TGCTTGTTTGTAATATTTTGGTATAGTAAGATAATATTTTTTCGTTTTTG TTATGTTGTGTTATTTTGAAATGAAGGGTCTAGATGAAGCACCTGGCCAA AGAGAGAATCTTCGATGAGAATGATCGATGTGCAATTTCTTACAATATAC ATTTACCTTTCATTATGAAATGAAACTCAGAAACAGCAAAAGAAAAAAAA TGATAAAAAAGACCCGAGTCTAAACAAAAATATACATGTTCTTATTCAAG GACATGGTGTAATTATGTGAAAGTTTGAAGTCAATAATCTTCGTTTCTCA ATCCCCTATTCCATATGGAAAATGTTCTTTCATGGTCAGGAATCCCATCT ACACTATTGTCATTTTCTTAAAAAGATTCAACAGTCAACTCTCCTTAATT CGAACTTTCTGTAATTCCTTCGAAAAATATTATCCTCTTTGGCTAGAAAG TCCTCCAAAATAATACTCTCAGTAATTCAAATCTTTCTGTAATTCGAAGA GATCCCTTTAAAATCGAATTAAAGGGTGTCGACTGGTTCATTAAATTTTA TTAATTTACATATTTTGCAAATTGTATTATTTTTCTCCTGAAACAGCTTT TTTACTATGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000128XLOC_000128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000229-exon-sc0000001-1575043694:2020666..2021564TCONS_00000229-exon-sc0000001-1575043694:2020666..2021564Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1575043694:2018549..2020104TCONS_00000229-exon-sc0000001-1575043694:2018549..2020104Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1575043694:2017695..2017829TCONS_00000229-exon-sc0000001-1575043694:2017695..2017829Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1575043694:2017040..2017279TCONS_00000229-exon-sc0000001-1575043694:2017040..2017279Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1575043694:2014487..2014684TCONS_00000229-exon-sc0000001-1575043694:2014487..2014684Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1575043694:2012904..2014187TCONS_00000229-exon-sc0000001-1575043694:2012904..2014187Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1510915933:2020666..2021564TCONS_00000229-exon-sc0000001-1510915933:2020666..2021564Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1510915933:2018549..2020104TCONS_00000229-exon-sc0000001-1510915933:2018549..2020104Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1510915933:2017695..2017829TCONS_00000229-exon-sc0000001-1510915933:2017695..2017829Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1510915933:2017040..2017279TCONS_00000229-exon-sc0000001-1510915933:2017040..2017279Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1510915933:2014487..2014684TCONS_00000229-exon-sc0000001-1510915933:2014487..2014684Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1510915933:2012904..2014187TCONS_00000229-exon-sc0000001-1510915933:2012904..2014187Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1491911889:2020666..2021564TCONS_00000229-exon-sc0000001-1491911889:2020666..2021564Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1491911889:2018549..2020104TCONS_00000229-exon-sc0000001-1491911889:2018549..2020104Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1491911889:2017695..2017829TCONS_00000229-exon-sc0000001-1491911889:2017695..2017829Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1491911889:2017040..2017279TCONS_00000229-exon-sc0000001-1491911889:2017040..2017279Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1491911889:2014487..2014684TCONS_00000229-exon-sc0000001-1491911889:2014487..2014684Clytia hemisphaericaexon
TCONS_00000229-exon-sc0000001-1491911889:2012904..2014187TCONS_00000229-exon-sc0000001-1491911889:2012904..2014187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2012904..2021564 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.866759 0.681377 1.26255 1.6511 4.52874 3.47507 2.68648 2.58654 3.08753 3.20209 1.43731 1.15838 1.25085 1.0156 2.87032 3.01069 0.219632 1.83371 1.03186 2.23907 4.05436 4.3622 2.07875 4.68712 0.613242 2.05144 2.12382 3.25434 2.07292 4.24718
Blast
BLAST of TCONS_00000229 vs. Swiss-Prot (Human)
Match: STAU2 (Double-stranded RNA-binding protein Staufen homolog 2 OS=Homo sapiens GN=STAU2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.836e-28
Identity = 88/287 (30.66%), Postives = 147/287 (51.22%), Query Frame = 2
Query:  143 ILYELAKSNKMTTNYQVVSETGPAHQKTYKVHLHVGHAGPFEGVGSSLKMARNAAASRALSDSF----------------PGFHINPTVELNILSMKSREVAVYRELESMSLPGSTTSRHDQYDSLFLSQQYHSGLMHRGGPRMNHHKQRRLWRMSVTICGRTYIGEGHTKSEARFNAAAHALRELKQILLEKAKLVELEMSKQKQAAAQNGTEGNPEKPKAPCFVSKLHELANKHHMEIDFKLMNESGPPHVRVFHINCKVGDHQIIGQGIGKKSAKNDAAQKMLQ 955
            ++ ELA+ N++   Y++++E GPAH K + V L +G    +E  GSS+K A+ A A++AL++S                 PG  I PTVELN L+MK  E A+YR L+    P    + +  +  ++ +Q+YH  +              +++ + +T+    + GEG T+  AR NAA  AL+ L+   +        E S Q     ++G + + +K      +S + E+A K +M + F+++ ESGPPH++ F     VG+    G+G  KK +K  AA  +LQ
Sbjct:   12 LVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQT-WESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG-SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYN--FRGMY-NQRYHCPV-------------PKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIP-------ERSPQN---GESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQ 270          
The following BLAST results are available for this feature:
BLAST of TCONS_00000229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STAU21.836e-2830.66Double-stranded RNA-binding protein Staufen homolo... [more]
back to top