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TCONS_00000224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000224
Unique NameTCONS_00000224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000224 ID=TCONS_00000224|Name=TCONS_00000224|organism=Clytia hemisphaerica|type=transcript|length=536bp
AGGGTGGAGTCGGCCGCGTTGCTCAAGCTCCCGTATGGGTATTTGGACTA
GCTGATACGAGGTTCGTCCCTGCTAGGGGTTACATGGAGATTGTTCAAAG
GAGAAACCGCGTAACCTTAACAGGAGTAATTAACCGCGTACTTAGTCAAA
ATAGTGTGATCCACAGTGACGAATGGCGTGCGTATATCAACCTGCCACAG
TTCGTACCGAACTGTATAGCACATGACACCGTAAATCACACATATAATTT
TGTCGATCCTCAAACAGGAGCCCACACACAGCACATTGAATCCTACTGGA
ATAGATTCAAGCTCAAGATTAAAGCAATGAAAGGAATAATGCGTGCTGAC
CTTCAAAGCTATATGGATGAATTTATGTGGAGAGACTGGTATGGACTTGA
TCATCCATTCGACAATATTATTGCACGCATCAATTTCGACTACCCCCAAG
GCTGAGAAAACGATATGAAAGTGGTTTCACCAATTgttgtgttttttgtt
ttagtttttattttgtatttgaaaaAGGAGAAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00000224-protein

>TCONS_00000224-protein ID=TCONS_00000224-protein|Name=TCONS_00000224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
GGVGRVAQAPVWVFGLADTRFVPARGYMEIVQRRNRVTLTGVINRVLSQN
SVIHSDEWRAYINLPQFVPNCIAHDTVNHTYNFVDPQTGAHTQHIESYWN
RFKLKIKAMKGIMRADLQSYMDEFMWRDWYGLDHPFDNIIARINFDYPQG
Run BLAST on NCBI

transcript from alignment at sc0000001:1761919..1763072-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000224 ID=TCONS_00000224|Name=TCONS_00000224|organism=Clytia hemisphaerica|type=transcript|length=1154bp|location=Sequence derived from alignment at sc0000001:1761919..1763072- (Clytia hemisphaerica)
AGGGTGGAGTCGGCCGCGTTGCTCAAGCTCCCGTATGGGTATTTGGACTA GCTGATACGAGGTTCGTCCCTGCTAGGGGTTACATGGAGATTGTTCAAAG GAGAAACCGCGTAACCTTAACAGGAGTAATTAACCGCGTACTTAGTCAAA ATAGTGTGATCCACAGTGACGAATGGCGTGCGTATATCAACCTGCCACAG TTCGTACCGAACTGTATAGCACATGACACCGTAAATCACACATATAATTT TGTCGATCCTCAAACAGGAGCCCACACACAGGTGTTTAGATGTTTTAATT ATCTTTTTGTTCATTAAAATTAATCCATGTGATGAATTAGCAGATTTCGA ATGAATATTTTTATCTTTTAATTGAGAAGAAATTATACATGGAGTAAGAC TTCCTCATTAAATTCCATGCCGGCTAGTAGATAAAAGAAGGATTTCTCTA CTTTTTAGCACATTGAATCCTACTGGAATAGATTCAAGCTCAAGATTAAA GCAATGAAAGGAATAATGCGTGCTGACCTTCAAAGCTATATGGATGAATT TATGTGGAGGTATAATATTTTCCACTTACAGACTTTAACTGCCTCCTCGG TAGCTCGAAATTCTCATTTCTCTCGTGAGTTTTAAGAAGGGTATACGATC GGGTCAAAAATTGCTCTTTTATTATATTAAAGCCATTGACCTTTTACATA GTTATATAATGTATGTTGATTCAGCAGATTGAAATAAATAGAATCTTTTG TAATGAATAAAGAAAAATGTGGAGCAAGATTTTTTTCTTCCTTTTATTTA CAAATTTGAAAGGACTCTTTAATTAAATTTTTTCTGACATCAGTTTCAGA CGAGTCGGGTGTATATAACGCCGTATAATTCCTTTAAACTCAATAAAGGT CCTCTTTAAGGAATTTTTTGATAAACTTTGTAGCTAAATATTTAGAATAT AATAAAGAAATGACTTGTCCTTAGAAACTTTTTCTTTTGTTTAATTTCAG AGACTGGTATGGACTTGATCATCCATTCGACAATATTATTGCACGCATCA ATTTCGACTACCCCCAAGGCTGAGAAAACGATATGAAAGTGGTTTCACCA ATTGTTGTGTTTTTTGTTTTAGTTTTTATTTTGTATTTGAAAAAGGAGAA AGAG

Coding sequence (CDS) from alignment at sc0000001:1761919..1763072-

>TCONS_00000224 ID=TCONS_00000224|Name=TCONS_00000224|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0000001:1761919..1763072- (Clytia hemisphaerica)
AGACTGGTATGGACTTGATCATCCATTCGACAATATTATTGCACGCATCA
ATTTCGACTACCCCCAAGGCTGACACATTGAATCCTACTGGAATAGATTC
AAGCTCAAGATTAAAGCAATGAAAGGAATAATGCGTGCTGACCTTCAAAG
CTATATGGATGAATTTATGTGGAGGGTGGAGTCGGCCGCGTTGCTCAAGC
TCCCGTATGGGTATTTGGACTAGCTGATACGAGGTTCGTCCCTGCTAGGG
GTTACATGGAGATTGTTCAAAGGAGAAACCGCGTAACCTTAACAGGAGTA
ATTAACCGCGTACTTAGTCAAAATAGTGTGATCCACAGTGACGAATGGCG
TGCGTATATCAACCTGCCACAGTTCGTACCGAACTGTATAGCACATGACA
CCGTAAATCACACATATAATTTTGTCGATCCTCAAACAGGAGCCCACACA
CAGAGACTGGTATGGACTTGATCATCCATTCGACAATATTATTGCACGCA
TCAATTTCGACTACCCCCAAGGCTGACACATTGAATCCTACTGGAATAGA
TTCAAGCTCAAGATTAAAGCAATGAAAGGAATAATGCGTGCTGACCTTCA
AAGCTATATGGATGAATTTATGTGGAGGGTGGAGTCGGCCGCGTTGCTCA
AGCTCCCGTATGGGTATTTGGACTAGCTGATACGAGGTTCGTCCCTGCTA
GGGGTTACATGGAGATTGTTCAAAGGAGAAACCGCGTAACCTTAACAGGA
GTAATTAACCGCGTACTTAGTCAAAATAGTGTGATCCACAGTGACGAATG
GCGTGCGTATATCAACCTGCCACAGTTCGTACCGAACTGTATAGCACATG
ACACCGTAAATCACACATATAATTTTGTCGATCCTCAAACAGGAGCCCAC
ACACAGAGACTGGTATGGACTTGATCATCCATTCGACAATATTATTGCAC
GCATCAATTTCGACTACCCCCAAGGCTGACACATTGAATCCTACTGGAAT
AGATTCAAGCTCAAGATTAAAGCAATGAAAGGAATAATGCGTGCTGACCT
TCAAAGCTATATGGATGAATTTATGTGGAGGGTGGAGTCGGCCGCGTTGC
TCAAGCTCCCGTATGGGTATTTGGACTAGCTGATACGAGGTTCGTCCCTG
CTAGGGGTTACATGGAGATTGTTCAAAGGAGAAACCGCGTAACCTTAACA
GGAGTAATTAACCGCGTACTTAGTCAAAATAGTGTGATCCACAGTGACGA
ATGGCGTGCGTATATCAACCTGCCACAGTTCGTACCGAACTGTATAGCAC
ATGACACCGTAAATCACACATATAATTTTGTCGATCCTCAAACAGGAGCC
CACACACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000124XLOC_000124Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000224-proteinTCONS_00000224-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000224-exon-sc0000001-1575043694:1762792..1763072TCONS_00000224-exon-sc0000001-1575043694:1762792..1763072Clytia hemisphaericaexon
TCONS_00000224-exon-sc0000001-1575043694:1762514..1762614TCONS_00000224-exon-sc0000001-1575043694:1762514..1762614Clytia hemisphaericaexon
TCONS_00000224-exon-sc0000001-1575043694:1761919..1762072TCONS_00000224-exon-sc0000001-1575043694:1761919..1762072Clytia hemisphaericaexon
TCONS_00000224-exon-sc0000001-1510915933:1762792..1763072TCONS_00000224-exon-sc0000001-1510915933:1762792..1763072Clytia hemisphaericaexon
TCONS_00000224-exon-sc0000001-1510915933:1762514..1762614TCONS_00000224-exon-sc0000001-1510915933:1762514..1762614Clytia hemisphaericaexon
TCONS_00000224-exon-sc0000001-1510915933:1761919..1762072TCONS_00000224-exon-sc0000001-1510915933:1761919..1762072Clytia hemisphaericaexon
TCONS_00000224-exon-sc0000001-1491911889:1762792..1763072TCONS_00000224-exon-sc0000001-1491911889:1762792..1763072Clytia hemisphaericaexon
TCONS_00000224-exon-sc0000001-1491911889:1762514..1762614TCONS_00000224-exon-sc0000001-1491911889:1762514..1762614Clytia hemisphaericaexon
TCONS_00000224-exon-sc0000001-1491911889:1761919..1762072TCONS_00000224-exon-sc0000001-1491911889:1761919..1762072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1761919..1763072 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108495 0 0.122843 0.120183 0 0 0 0 0.274279 0 0.439678 0 0.0721564 0.374675 0.0616068 0 0 0 0 0 0.209798 0 0 0 0 0.207922 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024445Tnp_ISXO2-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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