TCONS_00000223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000223
Unique NameTCONS_00000223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000223 ID=TCONS_00000223|Name=TCONS_00000223|organism=Clytia hemisphaerica|type=transcript|length=582bp
tgaagccttatgttcttatagtttcTTCTTATCTGAAACAAAAAGTGTAc
cgacaaaacaaacaaagttAATATAACCATGGATGAATTGAGTGGGTACA
ATCTAGATGCGTTCACATTTCTACTACGGAATATTCTACCAGAGTCGATC
ATCTGGAGAAGCAACCGTCTAAATGTTGGCCCACGGAAGAAAAGAGTCAA
GGAGAAAGCAGACAAATTGATGGGCTCAACGGATAATCCACCAGGCGAAG
AAATCCACGAAATCATAAACACTGGGAGTCAAGCAGAGGTTCTTTCATTT
CCAATGATTCAAAGCAAAGAAAACTCACCATGCAACTTTCAAGTGGACAT
TGATTCAATGATAGTGTTGAAGAATTTCGTGGCAATATCACCAGAAGAGA
GGGATGAGGTCACCATAACATCTCCTTTTGACCAAGCTGAACAACTCATC
ATTGATTATGACCATACACCACCTGGTTATGTAAGACTTCGATCAGATCA
AGGATATTTTGGAGTGGCATTTGATGAAGATTGTTCTGGCAAAGGAAGTA
TCATCAAAGGTGTAGAAAGAAAACCATTCACT
Run BLAST on NCBI

transcript from alignment at sc0000001:1669806..1671668-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000223 ID=TCONS_00000223|Name=TCONS_00000223|organism=Clytia hemisphaerica|type=transcript|length=1863bp|location=Sequence derived from alignment at sc0000001:1669806..1671668- (Clytia hemisphaerica)
TGAAGCCTTATGTTCTTATAGTTTCTTCTTATCTGAAACAAAAAGTGTAC
CGACAAAACAAACAAAGTTAATATAACCATGGATGAATTGAGTGGGTACA
ATCTAGATGCGTTCACATTTCTACTACGGAATATTCTACCAGAGTCGATC
ATCTGGAGAAGCAACCGTCTAAATGTTGGCCCACGGAAGAAAAGAGTCGT
AAGTTATTTATCCATGAGCGTGAGTTGCCGAGGTCATAGGAAACCTAACT
CGATCTTGTTTCTTTACTTCGATTGATCATGCGGGCATTCCAACCCACTT
CGATAGTAAAACATTATACGGGTGACGCTCTACTGTTCGAAACGCTCCAT
TATTCGATGATATTGAAAGTCACCATCAATAAGAAACTCTCGTAATCAAG
GCTCTGCAATTCGCTCCCTTATCAAAATGAAAATCCAACCCCACTTGAAA
ATCGAACTAGAGGACTGCAAACTCTATAAACACTTTTACAAAAAAATTAA
CAGCATGCCAAAGAGCATCTGATTTAAAAATAACGTTATCGAGCAACATC
TAGGTGTTCCCAGCTGGCACATAACGTTTTTTCAGCGTTGGACGCTGTGA
ACGTTAGATAAACGTTGAAACAACGTTGTCTACCAGCTGGGTTATGATTC
GTTTACAGAAGGAGAAAGCAGACAAATTGATGGGCTCAACGGATAATCCA
CCAGGCGAAGAAATCCACGAAATCATAAACACTGGGAGTCAAGCAGAGGT
TCTTTCATTTCCAATGATTCAAAGCAAAGAAAACTCACCATGCAACTGTA
AGAATGTCTCCAAATATCCCAACTGGCACAGAACGTCATAATAAGGTCTA
TCTGTAATCTGATGCCCTTCCATCTTCTTAACTGTAAAGAACAATTTAAG
AAAAATTTCTGTCTTTAAATTGTGGCAAAAATAGTTTCAATATATGGGTT
CAATCCCTGGCCGGGTCATAGCAAAGACTTCGTACGGAGCACAAAAATAG
TACTTGGTACCTCTCCGCTTGATGCTCAGCAATTACGGGAAATATCAAAA
CCTTATGAGTGTAAATATTTTCGCGGGTACTAAATTTTTGCGTGTACTTA
ATTTCCCGAGTTTTAGTACCCGCGAAAATATATACACTTAAAGTATCAAT
TGTAAGCGGATAATAATCAGGGAGTGGCGGATAGTAATCAGGGAGTGGCG
CCCCCTTGCCTTCGGGTAAGATAGCCACCGAATAAAGGGAGCCTTCGGGT
CGCTTCTGACTGCAGTCGCAGCTTACTTTACTTGCTTACTATATCTTTAC
CAAATGGATAGAGTCAAAATGAAGGGTCTTACGGTGATTGGATTCAATTA
AATCTGGTTATATTTGTCTTAGTTCAAGTGGACATTGATTCAATGATAGT
GTTGAAGAATTTCGTGGCAATATCACCAGAAGAGAGGGATGAGGTCACCA
TAACATCTCCTTTTGACCAAGCTGAACAACTCATCATTGATTATGACCAT
ACACCACCTGGTTATGTAAGGTAGGGCTAGAATTTGGCACGCTTGTCATA
AAGAAACTATTAGAAAAAGATTATAGAATTCCTGGCTAATGGAGATCAGG
TACATTTTTTCCACAGTCGAAAGTTATAGTTAGTGTGCCAGAAAAAGAAC
ATCTTTTAAACATTTCCTTATGAGTAGACGAAATGATGAAAAGGGGTTTG
AAAATCATTGCAAATATGAAAAGCGCAAAATACCCAGTCAAGGTAAAAGC
TACTTATCCTTAATAGACTTCGATCAGATCAAGGATATTTTGGAGTGGCA
TTTGATGAAGATTGTTCTGGCAAAGGAAGTATCATCAAAGGTGTAGAAAG
AAAACCATTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000123XLOC_000123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000223-exon-sc0000001-1575043694:1671471..1671668TCONS_00000223-exon-sc0000001-1575043694:1671471..1671668Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1575043694:1670872..1671010TCONS_00000223-exon-sc0000001-1575043694:1670872..1671010Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1575043694:1670149..1670296TCONS_00000223-exon-sc0000001-1575043694:1670149..1670296Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1575043694:1669806..1669902TCONS_00000223-exon-sc0000001-1575043694:1669806..1669902Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1510915933:1671471..1671668TCONS_00000223-exon-sc0000001-1510915933:1671471..1671668Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1510915933:1670872..1671010TCONS_00000223-exon-sc0000001-1510915933:1670872..1671010Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1510915933:1670149..1670296TCONS_00000223-exon-sc0000001-1510915933:1670149..1670296Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1510915933:1669806..1669902TCONS_00000223-exon-sc0000001-1510915933:1669806..1669902Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1491911889:1671471..1671668TCONS_00000223-exon-sc0000001-1491911889:1671471..1671668Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1491911889:1670872..1671010TCONS_00000223-exon-sc0000001-1491911889:1670872..1671010Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1491911889:1670149..1670296TCONS_00000223-exon-sc0000001-1491911889:1670149..1670296Clytia hemisphaericaexon
TCONS_00000223-exon-sc0000001-1491911889:1669806..1669902TCONS_00000223-exon-sc0000001-1491911889:1669806..1669902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1669806..1671668 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.145159	3.12587	1.41849	0.78957	1.4667	0.165518	0	0.654386	0.0469504	0	0.623983	0	0.202694	0	0.248855	0	0	0	0	0.0868354	0	0	0.805128	0.0772433	0	0.132185	0.844532
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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