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TCONS_00000218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000218
Unique NameTCONS_00000218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000218 ID=TCONS_00000218|Name=TCONS_00000218|organism=Clytia hemisphaerica|type=transcript|length=1849bp
CTTCATTGTCTCTTAATCTAAAGGTACAAGTTTGCAGAATTTCATAAATA
GGCGATAGAATGTTCAGAAAAACCAGTCAATACAACCAAAAGACTTCTAC
TTGTTCTGTCaagtaaaagaaaaagatgTATTCGACAAAATTATTTGTAA
CTTTCATCGTCTTCTTCGGATGCGTGTACTTGGCTCAAGgagATGGGATC
GATGGGATCGCAGCTTTAGAACCTTTCATTAAATCTGGTCTTGGAATAGC
TTTGAAAGCCAGCAATGGCAAATACGTGCGCCTTAGATGGAGAAGAATTG
AAACTCAAGATTATGACGAATATGTCATGGAAGCAAGATCGAcatcaaaa
agtgaaaattccAAGATTTTGGTCGAAAAAATTTCCGGAGGCTACGTCAA
ACTGAAGAATCCTGTATATAACAAATACCTCTGTGCTTTTAAAAGATGGA
GCCAAGATTGGAACAAATATATTTACCCTTTAGGTTGGAGTAGCGATCCT
AAATTCCCAAAGGATTGCCAGTTCAAAGTGTATCAAGTTAAAGCAAATAC
AGTGGCATTTTATAGTGAAAAATGGAAAGATTTTTTGGGAAGAAAATACC
GATGGGAAGCAATGATGGGCGATCAGGATTCCCGCCAAAATATTGAAGCG
GTTTGGAGCGGAATTGAAAGCGAGGCTGTATTTACAGTGTCAACAGGGTC
GGTTACTCCAGTAAAGGAAGAAATCGTGTCCATAAAATGGGGTGATTATG
TTGGTCCTTCGTCCGTTTCTCCAACTATTGTCAGtacaaaaatcagaaga
aaTGGTGGAAGTAAAGACCTTACTGATGAATTCGGGTTTGAAGATACCAT
TGTAAAAACACAAGAAACCAACTGGGAGCACGCTTGGGGGATAACTGCTG
GTATTAGCTACACATCTAGTGCTTCGGTGAATGTCGGTATTGTTGAAGCA
TCTGCATCACTAACTGTCAGTGCTGAAGTCAACTATAACGGTAAGAAAGG
CGGAAATCATGGGAAAACGACAAGCTTTAAAATACACGACAAAACCACAG
TCACCATTCCAGCTGGAAAATACGTCACCATAAATTACAAAGTAACGAAA
ATCAACGACGCCAAAATCCCATTTGTAGCGACAATCAAGAGGAGCTCAGA
AAAAGGAATACAAATGATCACACAAAAGGGTACGTGGAAGGGCGTGATGG
TTGTTGATTCCTACATTGAGGTCGAAGAAAGACCACTCTCAAATCCACTA
AAggtacaataaaaacaaacttcttatTCATTACCGTTAAATTGATGTTT
AGCTTACAGTaagaaattttgggaaaataaattttaatggATCTTACAGA
TTTGCTCAAAATATTGATCAGTTTCTGCCATCCACCAATTATTAAACTTC
CaccaaaattgatgtttttgaaaacaaaatgttACGCAATATAACAATAA
aggtcttttttgatggtttcgGAGCATTGAAAATCCCCgtcattgaaaat
aaaattctgaaaacaatttttcggcCATTCGCTACCACAGTTAAGCTTTT
GTCACAATTTCTTACTTAAATGTACCTagttttatttagatttgataGTA
AGGTTGTAGGTGtttggtttttctttttgatgtttGCTTCATGTTTTTAC
TGGTTGTAGGGAATTTTCCTTTTAGACACAagtgatatatatttttttta
attggatAAGAACAAGAAATTCTTCGTCAATTTGCATCCCACCATATCAG
GAGATGACTGTAGCCTAGGTTGGCTGAGTTTTAAGCAACATTCTTTGACT
ACACTTCTGGTATTCCGATTGCATTTTGCACTGCCTATAAGATATACAA
Run BLAST on NCBI

protein sequence of TCONS_00000218-protein

>TCONS_00000218-protein ID=TCONS_00000218-protein|Name=TCONS_00000218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MYSTKLFVTFIVFFGCVYLAQGDGIDGIAALEPFIKSGLGIALKASNGKY
VRLRWRRIETQDYDEYVMEARSTSKSENSKILVEKISGGYVKLKNPVYNK
YLCAFKRWSQDWNKYIYPLGWSSDPKFPKDCQFKVYQVKANTVAFYSEKW
KDFLGRKYRWEAMMGDQDSRQNIEAVWSGIESEAVFTVSTGSVTPVKEEI
VSIKWGDYVGPSSVSPTIVSTKIRRNGGSKDLTDEFGFEDTIVKTQETNW
EHAWGITAGISYTSSASVNVGIVEASASLTVSAEVNYNGKKGGNHGKTTS
FKIHDKTTVTIPAGKYVTINYKVTKINDAKIPFVATIKRSSEKGIQMITQ
KGTWKGVMVVDSYIEVEERPLSNPLKVQ
Run BLAST on NCBI

transcript from alignment at sc0000001:1580959..1584823-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000218 ID=TCONS_00000218|Name=TCONS_00000218|organism=Clytia hemisphaerica|type=transcript|length=3865bp|location=Sequence derived from alignment at sc0000001:1580959..1584823- (Clytia hemisphaerica)
CTTCATTGTCTCTTAATCTAAAGGTACAAGTTTGCAGAATTTCATAAATA GGCGATAGAATGTTCAGAAAAACCAGTCAATACAACCAAAAGACTTCTAC TTGTTCTGTCAAGTAAAAGAAAAAGATGTATTCGACAAAATTATTTGTAA CTTTCATCGTCTTCTTCGGATGCGTGTACTTGGCTCAAGGTAAGAGTTTA CACCTTTCCCGAATTGTTTTTTTTTTTTCGAAGGTCTTCAAACCATATTN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNGTTTAGTTTTGCAACATACAATTTTATG AAACTAAATAGAAACATTCAAACATTAAAACAAAAAAGTCAAAAAGCCTA AATAACAATTCGGGAAAGGTGTAACAATGATATTAATTACTAATTTCATT TTTAGGAGATGGGATCGATGGGATCGCAGCTTTAGAACCTTTCATTAAAT CTGGTCTTGGAATAGCTTTGAAAGCCAGCAATGGCAAATACGTGCGCCTT AGATGGAGAAGAATTGAAACTCAAGATTATGACGAATATGTCATGGAAGC AAGATCGACATCAAAAAGTGAAAATTCCAAGATTTTGGTCGAAAAAATTT CCGGAGGCTACGTCAAACTGAAGAATCCTGTATATAACAAATACCTCTGT GCTTTTAAAAGATGGAGCCAAGATTGGAACAAATATATTTACCCTTTAGG TTGGAGTAGCGATCCTAAATTCCCAAAGGATTGCCAGTTCAAAGTGTATC AAGTTAAAGCAAATACAGTGGCATTTTATAGTGAAAAATGGAAAGATTTT TTGGGAAGAAAATACCGATGGGAAGCAATGATGGGCGATCAGGATTCCCG CCAAAATATTGAAGCGGTTTGGAGCGGAATTGAAAGCGAGGCTGTATTTA CAGTGTCAACAGGGTCGGTTACTCCAGTAAAGGAAGAAATCGTGTCCATA AAATGGGGTGATTATGTTGGTCCTTCGTCCGTTTCTCCAACTATTGTCAG TACAAAAATCAGAAGAAATGGTGGAAGTAAAGACCTTACTGATGAATTCG GGTTTGAAGATACCATTGTAAAAACACAAGAAACCAACTGGGAGCACGCT TGGGGGATAACTGCTGGTATTAGCTACACATCTAGTGCTTCGGTGAATGT CGGTATTGTTGAAGCATCTGCATCACTAACTGTCAGTGCTGAAGTCAACT ATAACGGTAAGAAAGGCGGAAATCATGGGAAAACGACAAGCTTTAAAATA CACGACAAAACCACAGTCACCATTCCAGCTGGAAAATACGTCACCATAAA TTACAAAGTAACGAAAATCAACGACGCCAAAATCCCATTTGTAGCGACAA TCAAGAGGAGCTCAGAAAAAGGAATACAAATGATCACACAAAAGGGTACG TGGAAGGGCGTGATGGTTGTTGATTCCTACATTGAGGTCGAAGAAAGACC ACTCTCAAATCCACTAAAGGTACAATAAAAACAAACTTCTTATTCATTAC CGTTAAATTGATGTTTAGCTTACAGTAAGAAATTTTGGGAAAATAAATTT TAATGGATCTTACAGATTTGCTCAAAATATTGATCAGTTTCTGCCATCCA CCAATTATTAAACTTCCACCAAAATTGATGTTTTTGAAAACAAAATGTTA CGCAATATAACAATAAAGGTCTTTTTTGATGGTTTCGGAGCATTGAAAAT CCCCGTCATTGAAAATAAAATTCTGAAAACAATTTTTCGGCCATTCGCTA CCACAGTTAAGCTTTTGTCACAATTTCTTACTTAAATGTACCTAGTTTTA TTTAGATTTGATAGTAAGGTTGTAGGTGTTTGGTTTTTCTTTTTGATGTT TGCTTCATGTTTTTACTGGTTGTAGGGAATTTTCCTTTTAGACACAAGTG ATATATATTTTTTTTAATTGGATAAGAACAAGAAATTCTTCGTCAATTTG CATCCCACCATATCAGGAGATGACTGTAGCCTAGGTTGGCTGAGTTTTAA GCAACATTCTTTGACTACACTTCTGGTATTCCGATTGCATTTTGCACTGC CTATAAGATATACAA

Coding sequence (CDS) from alignment at sc0000001:1580959..1584823-

>TCONS_00000218 ID=TCONS_00000218|Name=TCONS_00000218|organism=Clytia hemisphaerica|type=CDS|length=2274bp|location=Sequence derived from alignment at sc0000001:1580959..1584823- (Clytia hemisphaerica)
GAGATGGGATCGATGGGATCGCAGCTTTAGAACCTTTCATTAAATCTGGT
CTTGGAATAGCTTTGAAAGCCAGCAATGGCAAATACGTGCGCCTTAGATG
GAGAAGAATTGAAACTCAAGATTATGACGAATATGTCATGGAAGCAAGAT
CGACATCAAAAAGTGAAAATTCCAAGATTTTGGTCGAAAAAATTTCCGGA
GGCTACGTCAAACTGAAGAATCCTGTATATAACAAATACCTCTGTGCTTT
TAAAAGATGGAGCCAAGATTGGAACAAATATATTTACCCTTTAGGTTGGA
GTAGCGATCCTAAATTCCCAAAGGATTGCCAGTTCAAAGTGTATCAAGTT
AAAGCAAATACAGTGGCATTTTATAGTGAAAAATGGAAAGATTTTTTGGG
AAGAAAATACCGATGGGAAGCAATGATGGGCGATCAGGATTCCCGCCAAA
ATATTGAAGCGGTTTGGAGCGGAATTGAAAGCGAGGCTGTATTTACAGTG
TCAACAGGGTCGGTTACTCCAGTAAAGGAAGAAATCGTGTCCATAAAATG
GGGTGATTATGTTGGTCCTTCGTCCGTTTCTCCAACTATTGTCAGTACAA
AAATCAGAAGAAATGGTGGAAGTAAAGACCTTACTGATGAATTCGGGTTT
GAAGATACCATTGTAAAAACACAAGAAACCAACTGGGAGCACGCTTGGGG
GATAACTGCTGGTATTAGCTACACATCTAGTGCTTCGGTGAATGTCGGTA
TTGTTGAAGCATCTGCATCACTAACTGTCAGTGCTGAAGTCAACTATAAC
GGTAAGAAAGGCGGAAATCATGGGAAAACGACAAGCTTTAAAATACACGA
CAAAACCACAGTCACCATTCCAGCTGGAAAATACGTCACCATAAATTACA
AAGTAACGAAAATCAACGACGCCAAAATCCCATTTGTAGCGACAATCAAG
AGGAGCTCAGAAAAAGGAATACAAATGATCACACAAAAGGGTACGTGGAA
GGGCGTGATGGTTGTTGATTCCTACATTGAGGTCGAAGAAAGACCACTCT
CAAATCCACTAAAGGTACAATAAATGTATTCGACAAAATTATTTGTAACT
TTCATCGTCTTCTTCGGATGCGTGTACTTGGCTCAAGGAGATGGGATCGA
TGGGATCGCAGCTTTAGAACCTTTCATTAAATCTGGTCTTGGAATAGCTT
TGAAAGCCAGCAATGGCAAATACGTGCGCCTTAGATGGAGAAGAATTGAA
ACTCAAGATTATGACGAATATGTCATGGAAGCAAGATCGACATCAAAAAG
TGAAAATTCCAAGATTTTGGTCGAAAAAATTTCCGGAGGCTACGTCAAAC
TGAAGAATCCTGTATATAACAAATACCTCTGTGCTTTTAAAAGATGGAGC
CAAGATTGGAACAAATATATTTACCCTTTAGGTTGGAGTAGCGATCCTAA
ATTCCCAAAGGATTGCCAGTTCAAAGTGTATCAAGTTAAAGCAAATACAG
TGGCATTTTATAGTGAAAAATGGAAAGATTTTTTGGGAAGAAAATACCGA
TGGGAAGCAATGATGGGCGATCAGGATTCCCGCCAAAATATTGAAGCGGT
TTGGAGCGGAATTGAAAGCGAGGCTGTATTTACAGTGTCAACAGGGTCGG
TTACTCCAGTAAAGGAAGAAATCGTGTCCATAAAATGGGGTGATTATGTT
GGTCCTTCGTCCGTTTCTCCAACTATTGTCAGTACAAAAATCAGAAGAAA
TGGTGGAAGTAAAGACCTTACTGATGAATTCGGGTTTGAAGATACCATTG
TAAAAACACAAGAAACCAACTGGGAGCACGCTTGGGGGATAACTGCTGGT
ATTAGCTACACATCTAGTGCTTCGGTGAATGTCGGTATTGTTGAAGCATC
TGCATCACTAACTGTCAGTGCTGAAGTCAACTATAACGGTAAGAAAGGCG
GAAATCATGGGAAAACGACAAGCTTTAAAATACACGACAAAACCACAGTC
ACCATTCCAGCTGGAAAATACGTCACCATAAATTACAAAGTAACGAAAAT
CAACGACGCCAAAATCCCATTTGTAGCGACAATCAAGAGGAGCTCAGAAA
AAGGAATACAAATGATCACACAAAAGGGTACGTGGAAGGGCGTGATGGTT
GTTGATTCCTACATTGAGGTCGAAGAAAGACCACTCTCAAATCCACTAAA
GGTACAATAAATGTATTCGACAAAATTATTTGTAACTTTCATCGTCTTCT
TCGGATGCGTGTACTTGGCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000121XLOC_000121Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000218-proteinTCONS_00000218-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000218-exon-sc0000001-1575043694:1584635..1584823TCONS_00000218-exon-sc0000001-1575043694:1584635..1584823Clytia hemisphaericaexon
TCONS_00000218-exon-sc0000001-1575043694:1580959..1582618TCONS_00000218-exon-sc0000001-1575043694:1580959..1582618Clytia hemisphaericaexon
TCONS_00000218-exon-sc0000001-1510915933:1584635..1584823TCONS_00000218-exon-sc0000001-1510915933:1584635..1584823Clytia hemisphaericaexon
TCONS_00000218-exon-sc0000001-1510915933:1580959..1582618TCONS_00000218-exon-sc0000001-1510915933:1580959..1582618Clytia hemisphaericaexon
TCONS_00000218-exon-sc0000001-1491911889:1584635..1584823TCONS_00000218-exon-sc0000001-1491911889:1584635..1584823Clytia hemisphaericaexon
TCONS_00000218-exon-sc0000001-1491911889:1580959..1582618TCONS_00000218-exon-sc0000001-1491911889:1580959..1582618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1580959..1584823 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0648983 0.0632861 0.056741 0.0568229 0 0.0230529 3.27544 3.17362 31.5194 16.4929 8.0435 13.4376 0.489167 0.866597 5.57932 3.77596 0.227355 0.257857 0.735876 0.69785 1.19979 1.37306 3.13779 3.42219 0.627106 0.186559 0.563594 0.176561 0.0557883 0.0542889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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