TCONS_00000210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000210
Unique NameTCONS_00000210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000210 ID=TCONS_00000210|Name=TCONS_00000210|organism=Clytia hemisphaerica|type=transcript|length=463bp
TGTCATTTGTCTTCGCTAACAACTCAATCTGGACCTATTGATATTGATGA
AGTTCAGGATATTATCCAAGACGACGATGGGCCTGAAGATGATATTGATT
TTGAGGTTGCTGAATCCAAATTCTTAAAAATGCAACAACACGCTCCAACA
TCTTCCACCATTAATCAATCACCAACATCCAAAACTCAAATGACACCGTC
CAAGATTCATGTCAACACCACTGCCAACTCACCTACATCGAAAACTCAAA
TGACACCGTCCAAGATTCATGTCAACACCACTGCCAACTCACAAACATTG
AAAACTAAAACAACTTCCATGATGCCCGTTAAAACCAACACTAAACTGAA
ATCGCCGTTAAAAGACTTGGATTTGCCCACTTGGGGGTGTAAAGCCAACC
ACAATGGAAAAGTAGTGAAATTGACCAATACCTGTCCAGTTGATTGTTGG
ATCAGCATAGTTA
Run BLAST on NCBI

protein sequence of TCONS_00000210-protein

>TCONS_00000210-protein ID=TCONS_00000210-protein|Name=TCONS_00000210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
CHLSSLTTQSGPIDIDEVQDIIQDDDGPEDDIDFEVAESKFLKMQQHAPT
SSTINQSPTSKTQMTPSKIHVNTTANSPTSKTQMTPSKIHVNTTANSQTL
KTKTTSMMPVKTNTKLKSPLKDLDLPTWGCKANHNGKVVKLTNTCPVDCW
ISIV
Run BLAST on NCBI

transcript from alignment at sc0000001:1347930..1349697-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000210 ID=TCONS_00000210|Name=TCONS_00000210|organism=Clytia hemisphaerica|type=transcript|length=1768bp|location=Sequence derived from alignment at sc0000001:1347930..1349697- (Clytia hemisphaerica)
TGTCATTTGTCTTCGCTAACAACTCAATCTGGACCTATTGATATTGATGA
AGTTCAGGATATTATCCAAGACGACGATGGGCCTGAAGATGATATTGATT
TTGAGGTTGCTGAATCCAAATTCTTAAAAATGCAACAACACGCTCCAACA
TCTTCCACCATTAATCAATGTAATTATTTAAATGTTTAGTTGCTTTTGAT
TGAAGTATCATTTCATAAAAAAGCAACTACATTTTTAGTTTATTAAAAAC
CCATCCAATGTTATTAACTAAAAATGTCTTTTCCAGGTTTTGGAATGGAT
AACACTAAAATTAAAGTTAATTTAGCAAAGAATTTTTATGTTTTTGTCTA
CTTGTTGTCCCCTATTGAAAGTTCATAAGACATCAACAGTGCACAGGTCA
ACACCACCACTGGCTGTACTCTTAGGTGCCAAATAAACGCCCCCCCCCCC
GCTTGTTAATTTTTCGAAAATTTTCCCCCCCCCCCCCCCCGTTTATTCGT
TTTTTTCTTTTCTATTTGTAGCACCAACATCCAAAACTCAAATGACACCG
TCCAAGATTCATGTCAACACCACTGCCAACTGTAATTATTTACTTTTGTT
ATCATTGGGGTTTGAATTTAATTCACAATTTTCAACTCGTTGAAAAATTA
TTTTCAACCAATAAAGGTGTGTTTTTTCTTTTCTATTTGTAGCACCAACA
TCGAAAACTCAAAGGACAACTGGGATTCATGTCAACACCACTGTTAACTG
TAATTATTTACTTTTGATATCATTAGGCTTTGAGTTTAACTCACAATTTT
CAACTCATTGAAAAATTATCTTCAATAGTTAAAGGTGTTCGTTAAAGGTG
TTTTTCTTTTCTATTTGTAGCACCAACATCCAAAACTCAAAGGACAGCAG
GGATTCATGTCAACACCACTGCCAACTGTAATTACTTACTTTTTTTATCA
TTGGGGTTTGAATTTAATTCACAATTTTCAACTCGTTGAAAAATTATATT
CAACCGATAAAGGTGTTTTTCTTTTCTATTTGTAGCACCAACATCGAAAA
CTCAAATGACACCCAAGATTCATGTCAACACCACTGTTAACTGTAATTAT
TTACTTTTGATATCATTAGGCTTTGAATATATATATCGCAATTTTCAACT
CATTGAAAAATTATCTTCAACCGATAAAGGTGTTTTTCTTTTTTATTTGT
AGCACCTACATCGAAAACTCAAATGACACCGTCCAAGATTCATGTCAACA
CCACTGCCAACTGTAATTATTTACTTTTGTTTTCATTGGCGTTTAATTTT
ATAACTTTCCATTTTCTAATCAATTTAAAAGTGTTTGTCATTCTGTTATG
TTAATGATTTTGCTTTCTTTTTGTAGCACAAACATTGAAAACTAAAACAA
CTTCCATGATGCCCGTTAAAACCAACACTAAACGTAATTGTTTACTTTCG
TTATCGTTAGGGTTTTGAAAAAATTAAAAGATTATTTTTATTCTGTTTAG
ATTTATTTATTTGTTTTCTATTAGTTTTGCATTATTGAAAGCTCAGTCAT
CGGCAATACATGTCAATGCCAGTACACAATGTAATTGTTTTACCTTTCCT
TTATTGTTATTGTTCATTAGTTGAATTTAACGTTTTATGAATTGCATTTA
GTGAAATCGCCGTTAAAAGACTTGGATTTGCCCACTTGGGGGTGTAAAGC
CAACCACAATGGAAAAGTAGTGAAATTGACCAATACCTGTCCAGTTGATT
GTTGGATCAGCATAGTTA

Coding sequence (CDS) from alignment at sc0000001:1347930..1349697-

>TCONS_00000210 ID=TCONS_00000210|Name=TCONS_00000210|organism=Clytia hemisphaerica|type=CDS|length=2310bp|location=Sequence derived from alignment at sc0000001:1347930..1349697- (Clytia hemisphaerica)
TGAAATCGCCGTTAAAAGACTTGGATTTGCCCACTTGGGGGTGTAAAGCC
AACCACAATGGAAAAGTAGTGAAATTGACCAATACCTGTCCAGTTGATTG
TTGGATCAGCATAGTTCACAAACATTGAAAACTAAAACAACTTCCATGAT
GCCCGTTAAAACCAACACTAAACCACCTACATCGAAAACTCAAATGACAC
CGTCCAAGATTCATGTCAACACCACTGCCAACTCACCAACATCCAAAACT
CAAATGACACCGTCCAAGATTCATGTCAACACCACTGCCAACTTGTCATT
TGTCTTCGCTAACAACTCAATCTGGACCTATTGATATTGATGAAGTTCAG
GATATTATCCAAGACGACGATGGGCCTGAAGATGATATTGATTTTGAGGT
TGCTGAATCCAAATTCTTAAAAATGCAACAACACGCTCCAACATCTTCCA
CCATTAATCAATTGAAATCGCCGTTAAAAGACTTGGATTTGCCCACTTGG
GGGTGTAAAGCCAACCACAATGGAAAAGTAGTGAAATTGACCAATACCTG
TCCAGTTGATTGTTGGATCAGCATAGTTCACAAACATTGAAAACTAAAAC
AACTTCCATGATGCCCGTTAAAACCAACACTAAACCACCTACATCGAAAA
CTCAAATGACACCGTCCAAGATTCATGTCAACACCACTGCCAACTCACCA
ACATCCAAAACTCAAATGACACCGTCCAAGATTCATGTCAACACCACTGC
CAACTTGTCATTTGTCTTCGCTAACAACTCAATCTGGACCTATTGATATT
GATGAAGTTCAGGATATTATCCAAGACGACGATGGGCCTGAAGATGATAT
TGATTTTGAGGTTGCTGAATCCAAATTCTTAAAAATGCAACAACACGCTC
CAACATCTTCCACCATTAATCAATTGAAATCGCCGTTAAAAGACTTGGAT
TTGCCCACTTGGGGGTGTAAAGCCAACCACAATGGAAAAGTAGTGAAATT
GACCAATACCTGTCCAGTTGATTGTTGGATCAGCATAGTTCACAAACATT
GAAAACTAAAACAACTTCCATGATGCCCGTTAAAACCAACACTAAACCAC
CTACATCGAAAACTCAAATGACACCGTCCAAGATTCATGTCAACACCACT
GCCAACTCACCAACATCCAAAACTCAAATGACACCGTCCAAGATTCATGT
CAACACCACTGCCAACTTGTCATTTGTCTTCGCTAACAACTCAATCTGGA
CCTATTGATATTGATGAAGTTCAGGATATTATCCAAGACGACGATGGGCC
TGAAGATGATATTGATTTTGAGGTTGCTGAATCCAAATTCTTAAAAATGC
AACAACACGCTCCAACATCTTCCACCATTAATCAATTGAAATCGCCGTTA
AAAGACTTGGATTTGCCCACTTGGGGGTGTAAAGCCAACCACAATGGAAA
AGTAGTGAAATTGACCAATACCTGTCCAGTTGATTGTTGGATCAGCATAG
TTCACAAACATTGAAAACTAAAACAACTTCCATGATGCCCGTTAAAACCA
ACACTAAACCACCTACATCGAAAACTCAAATGACACCGTCCAAGATTCAT
GTCAACACCACTGCCAACTCACCAACATCCAAAACTCAAATGACACCGTC
CAAGATTCATGTCAACACCACTGCCAACTTGTCATTTGTCTTCGCTAACA
ACTCAATCTGGACCTATTGATATTGATGAAGTTCAGGATATTATCCAAGA
CGACGATGGGCCTGAAGATGATATTGATTTTGAGGTTGCTGAATCCAAAT
TCTTAAAAATGCAACAACACGCTCCAACATCTTCCACCATTAATCAATTG
AAATCGCCGTTAAAAGACTTGGATTTGCCCACTTGGGGGTGTAAAGCCAA
CCACAATGGAAAAGTAGTGAAATTGACCAATACCTGTCCAGTTGATTGTT
GGATCAGCATAGTTCACAAACATTGAAAACTAAAACAACTTCCATGATGC
CCGTTAAAACCAACACTAAACCACCTACATCGAAAACTCAAATGACACCG
TCCAAGATTCATGTCAACACCACTGCCAACTCACCAACATCCAAAACTCA
AATGACACCGTCCAAGATTCATGTCAACACCACTGCCAACTTGTCATTTG
TCTTCGCTAACAACTCAATCTGGACCTATTGATATTGATGAAGTTCAGGA
TATTATCCAAGACGACGATGGGCCTGAAGATGATATTGATTTTGAGGTTG
CTGAATCCAAATTCTTAAAAATGCAACAACACGCTCCAACATCTTCCACC
ATTAATCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000114XLOC_000114Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000210-proteinTCONS_00000210-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000210-exon-sc0000001-1575043694:1349529..1349697TCONS_00000210-exon-sc0000001-1575043694:1349529..1349697Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1575043694:1349117..1349176TCONS_00000210-exon-sc0000001-1575043694:1349117..1349176Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1575043694:1348436..1348495TCONS_00000210-exon-sc0000001-1575043694:1348436..1348495Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1575043694:1348265..1348321TCONS_00000210-exon-sc0000001-1575043694:1348265..1348321Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1575043694:1347930..1348046TCONS_00000210-exon-sc0000001-1575043694:1347930..1348046Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1510915933:1349529..1349697TCONS_00000210-exon-sc0000001-1510915933:1349529..1349697Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1510915933:1349117..1349176TCONS_00000210-exon-sc0000001-1510915933:1349117..1349176Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1510915933:1348436..1348495TCONS_00000210-exon-sc0000001-1510915933:1348436..1348495Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1510915933:1348265..1348321TCONS_00000210-exon-sc0000001-1510915933:1348265..1348321Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1510915933:1347930..1348046TCONS_00000210-exon-sc0000001-1510915933:1347930..1348046Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1491911889:1349529..1349697TCONS_00000210-exon-sc0000001-1491911889:1349529..1349697Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1491911889:1349117..1349176TCONS_00000210-exon-sc0000001-1491911889:1349117..1349176Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1491911889:1348436..1348495TCONS_00000210-exon-sc0000001-1491911889:1348436..1348495Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1491911889:1348265..1348321TCONS_00000210-exon-sc0000001-1491911889:1348265..1348321Clytia hemisphaericaexon
TCONS_00000210-exon-sc0000001-1491911889:1347930..1348046TCONS_00000210-exon-sc0000001-1491911889:1347930..1348046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1347930..1349697 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279352	0	0	0.154724	0	0	0.538727	0.840583	0.117702	0.145793	0.283021	0.0930235	0.278683	0	0.396564	0.680918	0.629126	0.537362	0.148479	0.155372	0.40514	0	0	0	0.149964	0.535358	0.191524	0	0	0.315901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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