TCONS_00000205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000205
Unique NameTCONS_00000205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000205 ID=TCONS_00000205|Name=TCONS_00000205|organism=Clytia hemisphaerica|type=transcript|length=1143bp
GTCAGATACAGTATGCCTGCTATGACATGGAAGTATACAAGTCGTAAGAA
GAAACGACGGACGATTCGGATCAATAGTTTGATTAAGAAATATGTAGTTC
CTGATCATATACGATTGAAAGTTCAAGCTATGAAATTTACTGATGAACAG
ATTGAAGAGGTCAAAGAAGCATTTGCAATTTTCGATAAAAATGGTGATGG
CACAATCACGACGAAAGATTTNCATTTGCAATTTTCGATAAAAATGGTGA
CGGTACAATCACGACGAAAGATTTGATTACGGTCATGAGGTCGTTAGGGA
AAAACCCAACAGAAGATGAAATTGACGACATGATTAATGAAGTGGATACT
GATGGTAATGGAGTGATTGACTTCATTGAGTTTCTGGAGATGATGGCCAA
GATGTCAACAGATGTTGATGAGACAATCAAAGAAGCTTTCTACATCTTTG
ACAGTGATGGTTCAGGTGCCATTAGTTCAGAGGAGTTTCGTAAAGTGATG
ATGACGTTAGGTGCTCAAATGACTGACGAAGAAGTGACAGAAATTATTGA
AGAGGTTGATGTGGATGGTGATGGTCAAATTAATTTAGAAGAATTCGTTA
ACATGTTGAAAGGTGGAATCTAAAGAAAACACTATAACACAACCACTACA
ACAAATTATAAATGAATTTGCAACAATcaacaaaaacgaaattaaTAATT
CCGACCCCGACATTGTGCAGTGAATAAAGGCGGCGAAAAAATGTGAGCAG
AAAAACATAACTTGCAACAGCTTTCGAGTCTTTGAATACGATTGTTTTCC
GACATGATCCGTTATTGTTATTTGAGCTGGCGCATGACGTCTATTTGACG
TTGTTTGGGATGTTATGGACGCAAGATGAATGTTACTTTGACTTTGTGTA
CCCGCTTGAATGCGAGTTGTTGGCGGAATTGGAGGAAAACAGAACAAAAT
GGAAATCTGATGATCGTATGCAAGATTGAGAAATGAATGAATCCATTCAC
AGAAAAAAACGTTGAATATTAtgaacaattttaaaatataagacaaaaat
atttttaatacatAATATCTCTTACGTGCGTATTTCAGGAACTGAGCAGA
ATTTCTATGTCTTTCAATGTGCCTTTGGCGAAAGAAGAAATAC
Run BLAST on NCBI

transcript from alignment at sc0000001:1202685..1207172-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000205 ID=TCONS_00000205|Name=TCONS_00000205|organism=Clytia hemisphaerica|type=transcript|length=4488bp|location=Sequence derived from alignment at sc0000001:1202685..1207172- (Clytia hemisphaerica)
GTCAGATACAGTATGCCTGCTATGACATGGAAGTATACAAGTCGTAAGAA
GAAACGACGGACGATTCGGATCAATAGTTTGATTAAGAAATATGTAGTTC
CTGATCATATACGATTGAAAGTTCAAGTAATTAGTGATTTTCTTCTATTT
TTACTTACATACCAACTTTCCAAGCCGACATCAGGCATCGTTTTAAAGTA
CCCTTTATGAACTTTAGATGAACGAGCGTTATGGTGCTTTATACCTAGCG
GGATAGGCAGGTAATAGAATATTTTGTTGACTTCACTTTGTTGACATAAT
GCCAGCCTTTCCATAAAATACTGTATAGTGATTGAATCTCAGGTTTGATA
TGATGTATTAATATTTTCCCACCATAGTCTAAGGTATTATTAATGACTAC
AAAAAAAATCCCTAAGATTCGAACTAATATCTTAAGAAACTAAGTGATCA
ATTACAAAATCATAAGTTTTGAAAAAGCAGGATTAGGGTATCCGTCCCAC
ACTTTATAAAAAAGAGTGGAGTCTTTTATAAAGAAGGCGGGGATATAAAC
AGCCTTAATCCTCCAACGTAAACAAAGCAAGGAATAGAGGCTATGAGCTC
CTTTAGTGGGGAAGGATAGATGGATCAGATGGTAAAAGGGGGAGGCGCAA
AATATCATGAGAATCAATAGGTGCTTGAAAAACGTATAGTTGAAAAAAAT
CAAATTAAAAACAACAAGAGCTTTATCGTTAAATACGGTATAGCTAGAAG
AAGGGTTTTAGCTTTTGAACGAACCGGGAGCATACCTAGATAGCACTTTT
TACGTTAGGGTGAAAGCTTTGAGGAAGTTCATAGCGAATCAAGAAAACGC
GGCGCGACTTAAAAGAACATGTTGTATAAATTAAGAAACCTTTGCACGAT
AAAAGAGAAATCAAGAAAATTAAGTAGTGATTATCGAACCGCGATGGCAG
CTTTGGGATTAGAAGATCGTCATTACTTGCAGACCCTTGTAGAAGACACT
TTGGCAGATAATTTTTTACCACGAGCGCCGGAAAAAAGGCGTCAGTCGAT
ATGGGAGAAAGGCTCTAAAATGATTCAAGAGTCTTTTACATCAATGAAGC
AAACTTATGACGAATTAAAGTTTAGATCACCAAGAAATTTGCCTGAAAAT
AGTTTGGTATTAATAATATTTGTATAATTTATACAAAATTTTCATTAAGT
GAGAATTAACTGTTTTCTTCATGTTTGCACTGAACTTGTTAGTATCAAAT
AAACTTTTGTTAAATGATCAATTAGGTCCATAAAATCACAACATCGAGTT
TCAAGAAATATATTTGGCCATTTGGCTGTCCCTTTACTTTTCCTGATGCT
TGAAAATGAAAGTGAAAATAAGGGGCTCAAATATGGCTTAAGTAAAAGAT
TGTTCTTATGCAAACAAATCTTTGCTCCTGTTTTGAAATTTGGTAACGCT
CTGGTTACGGTAAGTTGAGGGTAAGTTATATTTTTTCAAGAATTGAATAC
AGTAACTTAATGACTTTTTCCTTTGCATTTTTAGGCTATGAAATTTACTG
ATGAACAGATTGAAGGTAAGCTTCGAGCACTTTTTCGTTTTGCTGTTCTA
CTTATGTCTGTTACAAGGATTTTCGTGGCGCATTTTTCAATCTAGATGAT
TTCTTAGCAAATGTAGTGGAAGACAAATAAAATTTTTAGATCGGTGGAAC
AAATCCTATTTTTAAAAACGCTCGGTTTATGGTAGGGAGATTGCTGACAA
AATCGTTAATCGTTAAGGTGGTCGTTAACAAACTTTTTGAAAATGTCAAA
AAATATTAAAATTGAAATATCTCAAAATGTATAAATGATATATTGTTGAA
ATTTTGTATCATGATACTTCATTATTATCAATATCTAAAAATAGAAAAAA
ATGTAAGAAATTTTAAAGACGGGGGTCATGACGTCATTTCTAAAAATAGA
TATCAAAATCTTGTGGCAGAAGAATCTCAACAACCAGATGGAGTTAGATT
TTGATATTTGGCAGTTATGTTACAATATTGACCTACTGTGTTTTGAGTGA
AAAAAATTTTTAAAAAAATCAAAAACCGGGGGTAAAAACGCAAAAAAATG
TTTTTTTAAATTTTGAAATCAACAAGACATTTTTTGAAAAATCTGTTTCA
CTCAAAACACCCCTTGCACTAAGAGAAAGCTGTGTACAAAATTCCAATTA
AATCGGACCAGCCAATCCTGAGATTCTTCCGCCACAAGATTGAAAACCCC
CGGTTTTGCTGTTTTGCGTAAACTGGCCTTAAAATTAATATTCCTTTCGG
GTAGGCGAAATATTTCGTTCTCTGGGCCAAAACATGGCCCTTGAATGTTA
CAGTCTAGGAAAATGCGTAGATCTTTATCTTACAAAGAATGATTTCTTCT
TTATAGAGGTCAAAGAAGCATTTGCAATTTTCGATAAAAATGGTGATGGC
ACAATCACGACGAAAGATTTNCATTTGCAATTTTCGATAAAAATGGTGAC
GGTACAATCACGACGAAAGATTTGATTACGGTCATGAGGTCGTTAGGGAA
AAACCCAACAGAAGATGAAATTGACGACATGATTAATGAAGTGGATACTG
ATGGTGAGACAAGATTTTGCATTGTTTCGCTATGCTTTTAATGCAATTTT
GATTGCTCTAGTTCTACCCAAATACATACTTTTCCAAATTGGCTATTCCA
ATAATTCTACCAAGTCACTACGGTAATCCGCTTTGGAAGGTCAATCCAAC
ATTCATAATTGCGCTGCTTTAGCCTAAAAACCATAGACCTATAGTTCCAA
TTTAATTTTTTTGTTTTCACTATAGGTAATGGAGTGATTGACTTCATTGA
GTTTCTGGAGATGATGGCCAAGATGTCAACAGATGTTGATGAGACAATCA
AAGAAGCTTTCTACATCTTTGACAGTGATGGTTCAGGTGAGAAATCAATT
TTTAGGGGTTATCTCCTCCATTGGGGCTTTTCCAGAACTATACTGTAAAC
CCCCTGTTGAGGAGGTCCATTTCCGTTCCAATGGGGTATGGTTTGATATG
TGGTGGTGTTCAATAAAAATAACTGGAATTACATCGACTTTGTTTCAACC
ATCAAATTAATCCTAGAAAAATTCAGAATCTTAGAGGATGTTAAACCTAA
ATTTTCCATTTTTCTGGAAAAGCCAATTGTCGCTAAGTTTAACTGGACAG
AGATATATACAGCGCCTTGTAAATTTAAATGCAACTCACTTAGTTCTTAT
TGTCTGGTTATTTGAGTTCTCGTGTAAAATCTTCCCGTTCTTAAGTCCTA
TTTTGAACCCCTTTTGAAAACAAATAAGAACTAAATTTTCAAAATTTCCT
CTAATAATTTTTAGAGCAATTAAAACTTCAAGTCAACGTTCACATGAGTT
TTTTATGGGTATTTCGGTGGGGTATAGGATGGAAATATTTTTCAAGCGGG
ATAGCAGTATAACACGGTCTAATCGTCTTATTATTTATCAGGTGCCATTA
GTTCAGAGGAGTTTCGTAAAGTGATGATGACGTTAGGTGCTCAAATGACT
GACGAAGAAGTGACAGAAATTATTGAAGAGGTTGATGTGGATGGTGATGG
TCAAATTAATTTAGAAGGTGCGTTTAGTACACTTTCTCTTTTCTTAAGCA
GCCATGTGCAAAGGTAGAGCATCCAGCTACGGTGCACAAGGTCGTGGGTT
TAATCCCTGATTGAGTATATCTTTGTACTTAGTGCTACAATGGTGCTTGA
TATATCACTCAGCTTGCTGCTCAGCACTTAAGAGAAGGATCAAGGGTAAG
TGGAGCAATCCAGGGAGAAAAAGTGACGCCTTCCTCTACCTTCAGGTAGA
TAGCTATCGAAAGAGGAGCCTTCGGGTCGTCTGCAACTGCGGCCACAGAT
TTGATTATTTACTACTTAGCAATTCTTACTTTTTAGAATTCGTTAACATG
TTGAAAGGTGGAATCTAAAGAAAACACTATAACACAACCACTACAACAAA
TTATAAATGAATTTGCAACAATCAACAAAAACGAAATTAATAATTCCGAC
CCCGACATTGTGCAGTGAATAAAGGCGGCGAAAAAATGTGAGCAGAAAAA
CATAACTTGCAACAGCTTTCGAGTCTTTGAATACGATTGTTTTCCGACAT
GATCCGTTATTGTTATTTGAGCTGGCGCATGACGTCTATTTGACGTTGTT
TGGGATGTTATGGACGCAAGATGAATGTTACTTTGACTTTGTGTACCCGC
TTGAATGCGAGTTGTTGGCGGAATTGGAGGAAAACAGAACAAAATGGAAA
TCTGATGATCGTATGCAAGATTGAGAAATGAATGAATCCATTCACAGAAA
AAAACGTTGAATATTATGAACAATTTTAAAATATAAGACAAAAATATTTT
TAATACATAATATCTCTTACGTGCGTATTTCAGGAACTGAGCAGAATTTC
TATGTCTTTCAATGTGCCTTTGGCGAAAGAAGAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000112XLOC_000112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000205-exon-sc0000001-1575043694:1207047..1207172TCONS_00000205-exon-sc0000001-1575043694:1207047..1207172Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1205608..1205638TCONS_00000205-exon-sc0000001-1575043694:1205608..1205638Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1204570..1204766TCONS_00000205-exon-sc0000001-1575043694:1204570..1204766Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1204237..1204347TCONS_00000205-exon-sc0000001-1575043694:1204237..1204347Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1203556..1203681TCONS_00000205-exon-sc0000001-1575043694:1203556..1203681Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1202685..1203236TCONS_00000205-exon-sc0000001-1575043694:1202685..1203236Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1207047..1207172TCONS_00000205-exon-sc0000001-1510915933:1207047..1207172Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1205608..1205638TCONS_00000205-exon-sc0000001-1510915933:1205608..1205638Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1204570..1204766TCONS_00000205-exon-sc0000001-1510915933:1204570..1204766Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1204237..1204347TCONS_00000205-exon-sc0000001-1510915933:1204237..1204347Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1203556..1203681TCONS_00000205-exon-sc0000001-1510915933:1203556..1203681Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1202685..1203236TCONS_00000205-exon-sc0000001-1510915933:1202685..1203236Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1207047..1207172TCONS_00000205-exon-sc0000001-1491911889:1207047..1207172Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1205608..1205638TCONS_00000205-exon-sc0000001-1491911889:1205608..1205638Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1204570..1204766TCONS_00000205-exon-sc0000001-1491911889:1204570..1204766Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1204237..1204347TCONS_00000205-exon-sc0000001-1491911889:1204237..1204347Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1203556..1203681TCONS_00000205-exon-sc0000001-1491911889:1203556..1203681Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1202685..1203236TCONS_00000205-exon-sc0000001-1491911889:1202685..1203236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1202685..1207172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.265893	0	0	0	0.231658	0.00595304	0.337118	0.638681	0	0	0.000657008	1.3969e-05	11.6422	9.35395	26.0078	35.5345	12.4887	8.3705	0	0	82.5838	75.8759	26.4148	51.3956	0.244238	0.0106088	7.60349	5.89168	45.4072	37.3381
Blast
[Close]
BLAST of TCONS_00000205 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.331e-38
Identity = 85/130 (65.38%), Postives = 103/130 (79.23%), Query Frame = 3 
Query:  225 FAIFDKNGDGTITTKDLITVMRSLGKNPTEDEIDDMINEVDTDGNGVIDFIEFLEMMAK--MSTDVDETIKEAFYIFDSDGSGAISSEEFRKVMMTLGAQMXXXXXXXXXXXXXXXXXXQINLEEFVNML 608
            F++FDK+GDGTITTK+L TVMRSLG+NPTE E+ DMINEVD DGNG IDF EFL MMA+    TD +E I+EAF +FD DG+G IS+ E R VM  LG ++TDEEV E+I E D+DGDGQ+N EEFV M+
Sbjct:   17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
BLAST of TCONS_00000205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.331e-3865.38Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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