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TCONS_00000205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000205
Unique NameTCONS_00000205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000205 ID=TCONS_00000205|Name=TCONS_00000205|organism=Clytia hemisphaerica|type=transcript|length=1143bp
GTCAGATACAGTATGCCTGCTATGACATGGAAGTATACAAGTCGTAAGAA
GAAACGACGGACGATTCGGATCAATAGTTTGATTAAGAAATATGTAGTTC
CTGATCATATACGATTGAAAGTTCAAGCTATGAAATTTACTGATGAACAG
ATTGAAGAGGTCAAAGAAGCATTTGCAATTTTCGATAAAAATGGTGATGG
CACAATCACGACGAAAGATTTNCATTTGCAATTTTCGATAAAAATGGTGA
CGGTACAATCACGACGAAAGATTTGATTACGGTCATGAGGTCGTTAGGGA
AAAACCCAACAGAAGATGAAATTGACGACATGATTAATGAAGTGGATACT
GATGGTAATGGAGTGATTGACTTCATTGAGTTTCTGGAGATGATGGCCAA
GATGTCAACAGATGTTGATGAGACAATCAAAGAAGCTTTCTACATCTTTG
ACAGTGATGGTTCAGGTGCCATTAGTTCAGAGGAGTTTCGTAAAGTGATG
ATGACGTTAGGTGCTCAAATGACTGACGAAGAAGTGACAGAAATTATTGA
AGAGGTTGATGTGGATGGTGATGGTCAAATTAATTTAGAAGAATTCGTTA
ACATGTTGAAAGGTGGAATCTAAAGAAAACACTATAACACAACCACTACA
ACAAATTATAAATGAATTTGCAACAATcaacaaaaacgaaattaaTAATT
CCGACCCCGACATTGTGCAGTGAATAAAGGCGGCGAAAAAATGTGAGCAG
AAAAACATAACTTGCAACAGCTTTCGAGTCTTTGAATACGATTGTTTTCC
GACATGATCCGTTATTGTTATTTGAGCTGGCGCATGACGTCTATTTGACG
TTGTTTGGGATGTTATGGACGCAAGATGAATGTTACTTTGACTTTGTGTA
CCCGCTTGAATGCGAGTTGTTGGCGGAATTGGAGGAAAACAGAACAAAAT
GGAAATCTGATGATCGTATGCAAGATTGAGAAATGAATGAATCCATTCAC
AGAAAAAAACGTTGAATATTAtgaacaattttaaaatataagacaaaaat
atttttaatacatAATATCTCTTACGTGCGTATTTCAGGAACTGAGCAGA
ATTTCTATGTCTTTCAATGTGCCTTTGGCGAAAGAAGAAATAC
Run BLAST on NCBI

transcript from alignment at sc0000001:1202685..1207172-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000205 ID=TCONS_00000205|Name=TCONS_00000205|organism=Clytia hemisphaerica|type=transcript|length=4488bp|location=Sequence derived from alignment at sc0000001:1202685..1207172- (Clytia hemisphaerica)
GTCAGATACAGTATGCCTGCTATGACATGGAAGTATACAAGTCGTAAGAA GAAACGACGGACGATTCGGATCAATAGTTTGATTAAGAAATATGTAGTTC CTGATCATATACGATTGAAAGTTCAAGTAATTAGTGATTTTCTTCTATTT TTACTTACATACCAACTTTCCAAGCCGACATCAGGCATCGTTTTAAAGTA CCCTTTATGAACTTTAGATGAACGAGCGTTATGGTGCTTTATACCTAGCG GGATAGGCAGGTAATAGAATATTTTGTTGACTTCACTTTGTTGACATAAT GCCAGCCTTTCCATAAAATACTGTATAGTGATTGAATCTCAGGTTTGATA TGATGTATTAATATTTTCCCACCATAGTCTAAGGTATTATTAATGACTAC AAAAAAAATCCCTAAGATTCGAACTAATATCTTAAGAAACTAAGTGATCA ATTACAAAATCATAAGTTTTGAAAAAGCAGGATTAGGGTATCCGTCCCAC ACTTTATAAAAAAGAGTGGAGTCTTTTATAAAGAAGGCGGGGATATAAAC AGCCTTAATCCTCCAACGTAAACAAAGCAAGGAATAGAGGCTATGAGCTC CTTTAGTGGGGAAGGATAGATGGATCAGATGGTAAAAGGGGGAGGCGCAA AATATCATGAGAATCAATAGGTGCTTGAAAAACGTATAGTTGAAAAAAAT CAAATTAAAAACAACAAGAGCTTTATCGTTAAATACGGTATAGCTAGAAG AAGGGTTTTAGCTTTTGAACGAACCGGGAGCATACCTAGATAGCACTTTT TACGTTAGGGTGAAAGCTTTGAGGAAGTTCATAGCGAATCAAGAAAACGC GGCGCGACTTAAAAGAACATGTTGTATAAATTAAGAAACCTTTGCACGAT AAAAGAGAAATCAAGAAAATTAAGTAGTGATTATCGAACCGCGATGGCAG CTTTGGGATTAGAAGATCGTCATTACTTGCAGACCCTTGTAGAAGACACT TTGGCAGATAATTTTTTACCACGAGCGCCGGAAAAAAGGCGTCAGTCGAT ATGGGAGAAAGGCTCTAAAATGATTCAAGAGTCTTTTACATCAATGAAGC AAACTTATGACGAATTAAAGTTTAGATCACCAAGAAATTTGCCTGAAAAT AGTTTGGTATTAATAATATTTGTATAATTTATACAAAATTTTCATTAAGT GAGAATTAACTGTTTTCTTCATGTTTGCACTGAACTTGTTAGTATCAAAT AAACTTTTGTTAAATGATCAATTAGGTCCATAAAATCACAACATCGAGTT TCAAGAAATATATTTGGCCATTTGGCTGTCCCTTTACTTTTCCTGATGCT TGAAAATGAAAGTGAAAATAAGGGGCTCAAATATGGCTTAAGTAAAAGAT TGTTCTTATGCAAACAAATCTTTGCTCCTGTTTTGAAATTTGGTAACGCT CTGGTTACGGTAAGTTGAGGGTAAGTTATATTTTTTCAAGAATTGAATAC AGTAACTTAATGACTTTTTCCTTTGCATTTTTAGGCTATGAAATTTACTG ATGAACAGATTGAAGGTAAGCTTCGAGCACTTTTTCGTTTTGCTGTTCTA CTTATGTCTGTTACAAGGATTTTCGTGGCGCATTTTTCAATCTAGATGAT TTCTTAGCAAATGTAGTGGAAGACAAATAAAATTTTTAGATCGGTGGAAC AAATCCTATTTTTAAAAACGCTCGGTTTATGGTAGGGAGATTGCTGACAA AATCGTTAATCGTTAAGGTGGTCGTTAACAAACTTTTTGAAAATGTCAAA AAATATTAAAATTGAAATATCTCAAAATGTATAAATGATATATTGTTGAA ATTTTGTATCATGATACTTCATTATTATCAATATCTAAAAATAGAAAAAA ATGTAAGAAATTTTAAAGACGGGGGTCATGACGTCATTTCTAAAAATAGA TATCAAAATCTTGTGGCAGAAGAATCTCAACAACCAGATGGAGTTAGATT TTGATATTTGGCAGTTATGTTACAATATTGACCTACTGTGTTTTGAGTGA AAAAAATTTTTAAAAAAATCAAAAACCGGGGGTAAAAACGCAAAAAAATG TTTTTTTAAATTTTGAAATCAACAAGACATTTTTTGAAAAATCTGTTTCA CTCAAAACACCCCTTGCACTAAGAGAAAGCTGTGTACAAAATTCCAATTA AATCGGACCAGCCAATCCTGAGATTCTTCCGCCACAAGATTGAAAACCCC CGGTTTTGCTGTTTTGCGTAAACTGGCCTTAAAATTAATATTCCTTTCGG GTAGGCGAAATATTTCGTTCTCTGGGCCAAAACATGGCCCTTGAATGTTA CAGTCTAGGAAAATGCGTAGATCTTTATCTTACAAAGAATGATTTCTTCT TTATAGAGGTCAAAGAAGCATTTGCAATTTTCGATAAAAATGGTGATGGC ACAATCACGACGAAAGATTTNCATTTGCAATTTTCGATAAAAATGGTGAC GGTACAATCACGACGAAAGATTTGATTACGGTCATGAGGTCGTTAGGGAA AAACCCAACAGAAGATGAAATTGACGACATGATTAATGAAGTGGATACTG ATGGTGAGACAAGATTTTGCATTGTTTCGCTATGCTTTTAATGCAATTTT GATTGCTCTAGTTCTACCCAAATACATACTTTTCCAAATTGGCTATTCCA ATAATTCTACCAAGTCACTACGGTAATCCGCTTTGGAAGGTCAATCCAAC ATTCATAATTGCGCTGCTTTAGCCTAAAAACCATAGACCTATAGTTCCAA TTTAATTTTTTTGTTTTCACTATAGGTAATGGAGTGATTGACTTCATTGA GTTTCTGGAGATGATGGCCAAGATGTCAACAGATGTTGATGAGACAATCA AAGAAGCTTTCTACATCTTTGACAGTGATGGTTCAGGTGAGAAATCAATT TTTAGGGGTTATCTCCTCCATTGGGGCTTTTCCAGAACTATACTGTAAAC CCCCTGTTGAGGAGGTCCATTTCCGTTCCAATGGGGTATGGTTTGATATG TGGTGGTGTTCAATAAAAATAACTGGAATTACATCGACTTTGTTTCAACC ATCAAATTAATCCTAGAAAAATTCAGAATCTTAGAGGATGTTAAACCTAA ATTTTCCATTTTTCTGGAAAAGCCAATTGTCGCTAAGTTTAACTGGACAG AGATATATACAGCGCCTTGTAAATTTAAATGCAACTCACTTAGTTCTTAT TGTCTGGTTATTTGAGTTCTCGTGTAAAATCTTCCCGTTCTTAAGTCCTA TTTTGAACCCCTTTTGAAAACAAATAAGAACTAAATTTTCAAAATTTCCT CTAATAATTTTTAGAGCAATTAAAACTTCAAGTCAACGTTCACATGAGTT TTTTATGGGTATTTCGGTGGGGTATAGGATGGAAATATTTTTCAAGCGGG ATAGCAGTATAACACGGTCTAATCGTCTTATTATTTATCAGGTGCCATTA GTTCAGAGGAGTTTCGTAAAGTGATGATGACGTTAGGTGCTCAAATGACT GACGAAGAAGTGACAGAAATTATTGAAGAGGTTGATGTGGATGGTGATGG TCAAATTAATTTAGAAGGTGCGTTTAGTACACTTTCTCTTTTCTTAAGCA GCCATGTGCAAAGGTAGAGCATCCAGCTACGGTGCACAAGGTCGTGGGTT TAATCCCTGATTGAGTATATCTTTGTACTTAGTGCTACAATGGTGCTTGA TATATCACTCAGCTTGCTGCTCAGCACTTAAGAGAAGGATCAAGGGTAAG TGGAGCAATCCAGGGAGAAAAAGTGACGCCTTCCTCTACCTTCAGGTAGA TAGCTATCGAAAGAGGAGCCTTCGGGTCGTCTGCAACTGCGGCCACAGAT TTGATTATTTACTACTTAGCAATTCTTACTTTTTAGAATTCGTTAACATG TTGAAAGGTGGAATCTAAAGAAAACACTATAACACAACCACTACAACAAA TTATAAATGAATTTGCAACAATCAACAAAAACGAAATTAATAATTCCGAC CCCGACATTGTGCAGTGAATAAAGGCGGCGAAAAAATGTGAGCAGAAAAA CATAACTTGCAACAGCTTTCGAGTCTTTGAATACGATTGTTTTCCGACAT GATCCGTTATTGTTATTTGAGCTGGCGCATGACGTCTATTTGACGTTGTT TGGGATGTTATGGACGCAAGATGAATGTTACTTTGACTTTGTGTACCCGC TTGAATGCGAGTTGTTGGCGGAATTGGAGGAAAACAGAACAAAATGGAAA TCTGATGATCGTATGCAAGATTGAGAAATGAATGAATCCATTCACAGAAA AAAACGTTGAATATTATGAACAATTTTAAAATATAAGACAAAAATATTTT TAATACATAATATCTCTTACGTGCGTATTTCAGGAACTGAGCAGAATTTC TATGTCTTTCAATGTGCCTTTGGCGAAAGAAGAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000112XLOC_000112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000205-exon-sc0000001-1575043694:1207047..1207172TCONS_00000205-exon-sc0000001-1575043694:1207047..1207172Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1205608..1205638TCONS_00000205-exon-sc0000001-1575043694:1205608..1205638Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1204570..1204766TCONS_00000205-exon-sc0000001-1575043694:1204570..1204766Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1204237..1204347TCONS_00000205-exon-sc0000001-1575043694:1204237..1204347Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1203556..1203681TCONS_00000205-exon-sc0000001-1575043694:1203556..1203681Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1575043694:1202685..1203236TCONS_00000205-exon-sc0000001-1575043694:1202685..1203236Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1207047..1207172TCONS_00000205-exon-sc0000001-1510915933:1207047..1207172Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1205608..1205638TCONS_00000205-exon-sc0000001-1510915933:1205608..1205638Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1204570..1204766TCONS_00000205-exon-sc0000001-1510915933:1204570..1204766Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1204237..1204347TCONS_00000205-exon-sc0000001-1510915933:1204237..1204347Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1203556..1203681TCONS_00000205-exon-sc0000001-1510915933:1203556..1203681Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1510915933:1202685..1203236TCONS_00000205-exon-sc0000001-1510915933:1202685..1203236Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1207047..1207172TCONS_00000205-exon-sc0000001-1491911889:1207047..1207172Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1205608..1205638TCONS_00000205-exon-sc0000001-1491911889:1205608..1205638Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1204570..1204766TCONS_00000205-exon-sc0000001-1491911889:1204570..1204766Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1204237..1204347TCONS_00000205-exon-sc0000001-1491911889:1204237..1204347Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1203556..1203681TCONS_00000205-exon-sc0000001-1491911889:1203556..1203681Clytia hemisphaericaexon
TCONS_00000205-exon-sc0000001-1491911889:1202685..1203236TCONS_00000205-exon-sc0000001-1491911889:1202685..1203236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1202685..1207172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.265893 0 0 0 0.231658 0.00595304 0.337118 0.638681 0 0 0.000657008 1.3969e-05 11.6422 9.35395 26.0078 35.5345 12.4887 8.3705 0 0 82.5838 75.8759 26.4148 51.3956 0.244238 0.0106088 7.60349 5.89168 45.4072 37.3381
Blast
BLAST of TCONS_00000205 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.331e-38
Identity = 85/130 (65.38%), Postives = 103/130 (79.23%), Query Frame = 3
Query:  225 FAIFDKNGDGTITTKDLITVMRSLGKNPTEDEIDDMINEVDTDGNGVIDFIEFLEMMAK--MSTDVDETIKEAFYIFDSDGSGAISSEEFRKVMMTLGAQMXXXXXXXXXXXXXXXXXXQINLEEFVNML 608
            F++FDK+GDGTITTK+L TVMRSLG+NPTE E+ DMINEVD DGNG IDF EFL MMA+    TD +E I+EAF +FD DG+G IS+ E R VM  LG ++TDEEV E+I E D+DGDGQ+N EEFV M+
Sbjct:   17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
The following BLAST results are available for this feature:
BLAST of TCONS_00000205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.331e-3865.38Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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