TCONS_00000163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000163
Unique NameTCONS_00000163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000163 ID=TCONS_00000163|Name=TCONS_00000163|organism=Clytia hemisphaerica|type=transcript|length=900bp
CAAAGATTTAGTACAGAGAGCGCGAGAGAGAGGAAGATTTTCACCTTCAG
CCACACATCAAGCTGTGTGATTCACATTCAAAAGAAGCATAATTTACTAA
ACTGTTGTGTGGCCTTCAACGAAGAATCAAGGGAGCATGGGCAACATGAA
AATTGTATGTTTGGCATTTTTGGTATTAGCCTTTGTGATGACTAACACAA
tGGAGGATATACATGGACAACATCGAAGCTCAATGACATCAATGGTTCAC
GCTTCTATTAGTGGAGAAGATTTTGAAGACATTGAATTCACAGTTGGCAA
AGCTGACTTTAGAGCTGAGTTCAAGGTGAGACGTCGAAGAAGACAttgaa
agaaataaagaaactaATGGGGACAAGTCTTTGCTATCTAATGGTACGTG
TAGAAGTGGGGGGAGGGACTTATTGAAATGTTATTGTAATATAATTTTTG
CTCCAATACCGTACATGTATATTGTTTATTAAAGATAATCTTACATTATG
AGGAACCTTAAAGatatacttttttataaaaaactgtaaaactctttttt
aattttttatagtTGTATTCGCAACAGAATTTTGTTCTATcactaaagaa
aaataatagtgTTGATAATCTCAATAATTCGAATCTGTAATTCGATAAGA
ATTCATAATCTGTTGGAAATCGAATTTGAGAGACAGTCAATGGTACTATG
GTCGTTTTCGTTATATTATGCTTTGACCGTCGAAATTGGCCAACCGCTGG
GCACGCAGAAAATACGTATAAACCAACTAAAGTTAACATATCCGCGATAG
CAATATTAGTTCATGATAAAATTCCTCGCTTCAAATTAAAGTTGCTTATT
ATCGTGTTTTGATCGAGCgataaaaatgataattgaAATTTCGAAATGGC
Run BLAST on NCBI

transcript from alignment at sc0000001:525189..527033-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000163 ID=TCONS_00000163|Name=TCONS_00000163|organism=Clytia hemisphaerica|type=transcript|length=1845bp|location=Sequence derived from alignment at sc0000001:525189..527033- (Clytia hemisphaerica)
CAAAGATTTAGTACAGAGAGCGCGAGAGAGAGGAAGATTTTCACCTTCAG
CCACACATCAAGCTGTGTGATTCACATTCAAAAGAAGCATAATTTACTAA
ACTGTTGTGTGGCCTTCAACGAAGAATCAAGGGAGCATGGGCAACATGAA
AATTGTATGTTTGGCATTTTTGGTATTAGCCTTTGTGATGACTAACACAA
GTAAGTGCCATCTTTTCTCTAATTAACGGACATTATCGGAAGGGGGCGTC
CGCTAGTCCTGTACTCCCGAATAGACGGGGGAAGATTCAAATAAATAAGA
AAAATCTATTTCAAATAGACGTATAAAATTGGGGGTTAAACCCTATGGTT
TGAGCGATTTCAATCTTGTAAGGTCGATTTTTACACTGCTATGACCAAAT
TGAAACGTCTCAATTTAGCAGGGGGGCTAAAAAATTTGATCCAAAACATA
GTGACACATTAAACTACGTAGCCAATCAAATTTCTTTTCAGTGGAGGATA
TACATGGACAACATCGAAGCTCAATGACATCAATGGTTCACGCTTCTATT
AGTGGAGAAGATTTTGAAGACATTGAATTCACAGGTTAGTGTTAAGAAAC
TTAAAAAAAAAAGTTCAATAATGGTTGAAGCTGCCATGGAGGCAAGAAGT
CCAACCTCAAAAGTCTGAGAAGACAAAGACTTCTTTTACTTTTGTTAATT
TAATTTTTTCAGACACTGATTTAGACCTTTTTCACTTGTAGATAGAATCC
TTGTCCACTACAAGAAAAGGGGTCAATCTTACATTTTTAATTTAGCAAAG
TATTTCAAGTTTTAATTTTTCAGACACTGTATTTTGACCTTGTGCCTCGT
TGTCAGCGATGAGTTTTAATGGGGTTCAGCTCTTTGGCTGTCGAATGAAA
AATTAATTCCGGTTAATTCTAGTTTCTATGCCGGTGAATTCTTAGCAAAC
CCAGTGTATTGATTAGCGTAAGGTGGCTTGAGGTGGCGATCCGAATTTTG
GGACCTAGGTGTAATGTATTTACTTCGTGCCTTAGACGGACGAAATTTGC
CGTTTGCCGGGTCCAACAAATAAGACGCCTGAGTTTTTTTAGTGGTTCTT
TCTTCATTTCAAGAAGCTTACGTTTGAAATGCAATGGCAAATCAACAAAG
GTTGATTGACCAAGTTTTTAATTTCTGGATGAGCATTTAAAACTGTAATA
AAACTTTTAAAACATTCAAAATTTTTATCTTATTTCAGTTGGCAAAGCTG
ACTTTAGAGCTGAGTTCAAGGTGAGACGTCGAAGAAGACATTGAAAGAAA
TAAAGAAACTAATGGGGACAAGTCTTTGCTATCTAATGGTACGTGTAGAA
GTGGGGGGAGGGACTTATTGAAATGTTATTGTAATATAATTTTTGCTCCA
ATACCGTACATGTATATTGTTTATTAAAGATAATCTTACATTATGAGGAA
CCTTAAAGATATACTTTTTTATAAAAAACTGTAAAACTCTTTTTTAATTT
TTTATAGTTGTATTCGCAACAGAATTTTGTTCTATCACTAAAGAAAAATA
ATAGTGTTGATAATCTCAATAATTCGAATCTGTAATTCGATAAGAATTCA
TAATCTGTTGGAAATCGAATTTGAGAGACAGTCAATGGTACTATGGTCGT
TTTCGTTATATTATGCTTTGACCGTCGAAATTGGCCAACCGCTGGGCACG
CAGAAAATACGTATAAACCAACTAAAGTTAACATATCCGCGATAGCAATA
TTAGTTCATGATAAAATTCCTCGCTTCAAATTAAAGTTGCTTATTATCGT
GTTTTGATCGAGCGATAAAAATGATAATTGAAATTTCGAAATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000095XLOC_000095Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000163-exon-sc0000001-1575043694:526834..527033TCONS_00000163-exon-sc0000001-1575043694:526834..527033Clytia hemisphaericaexon
TCONS_00000163-exon-sc0000001-1575043694:526450..526542TCONS_00000163-exon-sc0000001-1575043694:526450..526542Clytia hemisphaericaexon
TCONS_00000163-exon-sc0000001-1575043694:525189..525795TCONS_00000163-exon-sc0000001-1575043694:525189..525795Clytia hemisphaericaexon
TCONS_00000163-exon-sc0000001-1510915933:526834..527033TCONS_00000163-exon-sc0000001-1510915933:526834..527033Clytia hemisphaericaexon
TCONS_00000163-exon-sc0000001-1510915933:526450..526542TCONS_00000163-exon-sc0000001-1510915933:526450..526542Clytia hemisphaericaexon
TCONS_00000163-exon-sc0000001-1510915933:525189..525795TCONS_00000163-exon-sc0000001-1510915933:525189..525795Clytia hemisphaericaexon
TCONS_00000163-exon-sc0000001-1491911889:526834..527033TCONS_00000163-exon-sc0000001-1491911889:526834..527033Clytia hemisphaericaexon
TCONS_00000163-exon-sc0000001-1491911889:526450..526542TCONS_00000163-exon-sc0000001-1491911889:526450..526542Clytia hemisphaericaexon
TCONS_00000163-exon-sc0000001-1491911889:525189..525795TCONS_00000163-exon-sc0000001-1491911889:525189..525795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:525189..527033 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0513426	0.316004	0.523195	0.398117	1.45401	1.23987	28.2747	31.9676	38.8797	33.6709	18.0354	18.5426	12.7686	15.8595	1.90653	1.44656	0.883132	0.922932	4.04417	2.64999	0.0496409	0	0	0	0	0.0491971	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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