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TCONS_00000161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000161
Unique NameTCONS_00000161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000161 ID=TCONS_00000161|Name=TCONS_00000161|organism=Clytia hemisphaerica|type=transcript|length=187bp
aaCACGACAAGCCTAGTTGAAGAAACATTTGACTCAAACATCACAAGAAG
TTGCATCGCTTTTTACGCACAAGATTcagaaaaaatgatgaaattctTGT
TCGTTATTGTTGCCTTAACAGTAATTTACGGATCGGCATTGGCAAAGCCT
ACATACGAAGATGAAACACTGATGAATGGGCTTCCTC
Run BLAST on NCBI

transcript from alignment at sc0000001:462919..464231-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000161 ID=TCONS_00000161|Name=TCONS_00000161|organism=Clytia hemisphaerica|type=transcript|length=1313bp|location=Sequence derived from alignment at sc0000001:462919..464231- (Clytia hemisphaerica)
AACACGACAAGCCTAGTTGAAGAAACATTTGACTCAAACATCACAAGAAG TTGCATCGCTTTTTACGCACAAGATTCAGAAAAAATGATGAAATTCTTGT TCGTTATTGTTGCCTTAACAGTAATTTACGGTAAGGAAAACATTGATATA AATTTTATGCCATATTAAAGGAAACAATCTTGGCGGGATTTTGATTTGTT AGGTCAAAGTTCTTTCAGAGGGAATTTAATTAGGCGGATGGTATAAAAAA ATTGAATTTGGCTGGATTTAAATTTGACGTATGAGATTTCTTTGATTGAA AAAAAAGCTTATTTTGGCGGGTTTTGTTTGGCATATCCACCAAACTTCTA TACCGCCGAAGTATCTTCGTTTTAGATATGTTTTATGAGAGAGTAAATCT CGTACAAACAGAACTGCAAAGATCGGATAAATATTCGCTAGATTCTATTT CGTGAGCCAATTAAATGATATAATTTGATGAATTTATTACAGGCAGCGAT TCGAAAATTTTGGGTTATGGGTTCAATATTCCGAATCAATAAATAGCCAT TTAGTGATGGCCGTAAAAGCATCAATTTTCGTTAAAAATTGCTAATTTCT TATTCCCAAAATCTGATTTTAAAGGTTTCGCGTGGAATTATTTTCGCGAG TCAGCGATCTCAAAAGATTTTTGCGACATTTAAAAATACCGGTTAAAGGT AGTTGAAAACTAAATTTTGGAATACTAGAGGCCTAATGAATATCAGAAAA ATATATATACTCTTCATTTGCTTTGGAATTTCAGGATCGGCATTGGCAAA GCCTACATACGAAGATGGTAAGAATTTTCATAACACATATCTTTTTCATA TGAGAATATAAGAGCACAATTGGCTCTTCCAGAAAATGTCCGTACATGCC TTGTCCGGTAGGTAAATTTTCTCTGTCCAGGGGTAATTTGGGTTGTCCGG GGGGTCAACTGATGCTTGTCGGAGGTAAAACCCGTTGTCCGCGGGGGCAA AAGTCACTTTGTCCGGTTAAATCACTGAAAAATTTTATATCCTCCACCCC CATATTCAATTTTTTTCTGGAAAAGCCCAATGCTTCGGTGTCAAATATTA AAGACCATTTTAGGAACAGTTTAAGGCTTTGCGCGGGCTCTAGAACAGGC AGTTTCTGAAGTTTCTGAGGACAGGATTGTTGTTCTTAGGATTTGATCAA GATTGAGGGCGATGTTCTTTTAAAGAGTGTAATATCTATCGTTTGCATCT TAAATGGTAGAATCTTACTCGGGTTAATTTCGTTTCTAGAAACACTGATG AATGGGCTTCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000093XLOC_000093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000161-exon-sc0000001-1575043694:464102..464231TCONS_00000161-exon-sc0000001-1575043694:464102..464231Clytia hemisphaericaexon
TCONS_00000161-exon-sc0000001-1575043694:463415..463447TCONS_00000161-exon-sc0000001-1575043694:463415..463447Clytia hemisphaericaexon
TCONS_00000161-exon-sc0000001-1575043694:462919..462942TCONS_00000161-exon-sc0000001-1575043694:462919..462942Clytia hemisphaericaexon
TCONS_00000161-exon-sc0000001-1510915933:464102..464231TCONS_00000161-exon-sc0000001-1510915933:464102..464231Clytia hemisphaericaexon
TCONS_00000161-exon-sc0000001-1510915933:463415..463447TCONS_00000161-exon-sc0000001-1510915933:463415..463447Clytia hemisphaericaexon
TCONS_00000161-exon-sc0000001-1510915933:462919..462942TCONS_00000161-exon-sc0000001-1510915933:462919..462942Clytia hemisphaericaexon
TCONS_00000161-exon-sc0000001-1491911889:464102..464231TCONS_00000161-exon-sc0000001-1491911889:464102..464231Clytia hemisphaericaexon
TCONS_00000161-exon-sc0000001-1491911889:463415..463447TCONS_00000161-exon-sc0000001-1491911889:463415..463447Clytia hemisphaericaexon
TCONS_00000161-exon-sc0000001-1491911889:462919..462942TCONS_00000161-exon-sc0000001-1491911889:462919..462942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:462919..464231 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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