|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000161 ID=TCONS_00000161|Name=TCONS_00000161|organism=Clytia hemisphaerica|type=transcript|length=187bp
aaCACGACAAGCCTAGTTGAAGAAACATTTGACTCAAACATCACAAGAAG
TTGCATCGCTTTTTACGCACAAGATTcagaaaaaatgatgaaattctTGT
TCGTTATTGTTGCCTTAACAGTAATTTACGGATCGGCATTGGCAAAGCCT
ACATACGAAGATGAAACACTGATGAATGGGCTTCCTC Run BLAST on NCBI transcript from alignment at sc0000001:462919..464231- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000161 ID=TCONS_00000161|Name=TCONS_00000161|organism=Clytia hemisphaerica|type=transcript|length=1313bp|location=Sequence derived from alignment at sc0000001:462919..464231- (Clytia hemisphaerica)
AACACGACAAGCCTAGTTGAAGAAACATTTGACTCAAACATCACAAGAAG
TTGCATCGCTTTTTACGCACAAGATTCAGAAAAAATGATGAAATTCTTGT
TCGTTATTGTTGCCTTAACAGTAATTTACGGTAAGGAAAACATTGATATA
AATTTTATGCCATATTAAAGGAAACAATCTTGGCGGGATTTTGATTTGTT
AGGTCAAAGTTCTTTCAGAGGGAATTTAATTAGGCGGATGGTATAAAAAA
ATTGAATTTGGCTGGATTTAAATTTGACGTATGAGATTTCTTTGATTGAA
AAAAAAGCTTATTTTGGCGGGTTTTGTTTGGCATATCCACCAAACTTCTA
TACCGCCGAAGTATCTTCGTTTTAGATATGTTTTATGAGAGAGTAAATCT
CGTACAAACAGAACTGCAAAGATCGGATAAATATTCGCTAGATTCTATTT
CGTGAGCCAATTAAATGATATAATTTGATGAATTTATTACAGGCAGCGAT
TCGAAAATTTTGGGTTATGGGTTCAATATTCCGAATCAATAAATAGCCAT
TTAGTGATGGCCGTAAAAGCATCAATTTTCGTTAAAAATTGCTAATTTCT
TATTCCCAAAATCTGATTTTAAAGGTTTCGCGTGGAATTATTTTCGCGAG
TCAGCGATCTCAAAAGATTTTTGCGACATTTAAAAATACCGGTTAAAGGT
AGTTGAAAACTAAATTTTGGAATACTAGAGGCCTAATGAATATCAGAAAA
ATATATATACTCTTCATTTGCTTTGGAATTTCAGGATCGGCATTGGCAAA
GCCTACATACGAAGATGGTAAGAATTTTCATAACACATATCTTTTTCATA
TGAGAATATAAGAGCACAATTGGCTCTTCCAGAAAATGTCCGTACATGCC
TTGTCCGGTAGGTAAATTTTCTCTGTCCAGGGGTAATTTGGGTTGTCCGG
GGGGTCAACTGATGCTTGTCGGAGGTAAAACCCGTTGTCCGCGGGGGCAA
AAGTCACTTTGTCCGGTTAAATCACTGAAAAATTTTATATCCTCCACCCC
CATATTCAATTTTTTTCTGGAAAAGCCCAATGCTTCGGTGTCAAATATTA
AAGACCATTTTAGGAACAGTTTAAGGCTTTGCGCGGGCTCTAGAACAGGC
AGTTTCTGAAGTTTCTGAGGACAGGATTGTTGTTCTTAGGATTTGATCAA
GATTGAGGGCGATGTTCTTTTAAAGAGTGTAATATCTATCGTTTGCATCT
TAAATGGTAGAATCTTACTCGGGTTAATTTCGTTTCTAGAAACACTGATG
AATGGGCTTCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000161-exon-sc0000001-1575043694:464102..464231 | TCONS_00000161-exon-sc0000001-1575043694:464102..464231 | Clytia hemisphaerica | exon |
| TCONS_00000161-exon-sc0000001-1575043694:463415..463447 | TCONS_00000161-exon-sc0000001-1575043694:463415..463447 | Clytia hemisphaerica | exon |
| TCONS_00000161-exon-sc0000001-1575043694:462919..462942 | TCONS_00000161-exon-sc0000001-1575043694:462919..462942 | Clytia hemisphaerica | exon |
| TCONS_00000161-exon-sc0000001-1510915933:464102..464231 | TCONS_00000161-exon-sc0000001-1510915933:464102..464231 | Clytia hemisphaerica | exon |
| TCONS_00000161-exon-sc0000001-1510915933:463415..463447 | TCONS_00000161-exon-sc0000001-1510915933:463415..463447 | Clytia hemisphaerica | exon |
| TCONS_00000161-exon-sc0000001-1510915933:462919..462942 | TCONS_00000161-exon-sc0000001-1510915933:462919..462942 | Clytia hemisphaerica | exon |
| TCONS_00000161-exon-sc0000001-1491911889:464102..464231 | TCONS_00000161-exon-sc0000001-1491911889:464102..464231 | Clytia hemisphaerica | exon |
| TCONS_00000161-exon-sc0000001-1491911889:463415..463447 | TCONS_00000161-exon-sc0000001-1491911889:463415..463447 | Clytia hemisphaerica | exon |
| TCONS_00000161-exon-sc0000001-1491911889:462919..462942 | TCONS_00000161-exon-sc0000001-1491911889:462919..462942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:462919..464231 - |
Blast
The following BLAST results are available for this feature:
|
