TCONS_00000160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000160
Unique NameTCONS_00000160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000160 ID=TCONS_00000160|Name=TCONS_00000160|organism=Clytia hemisphaerica|type=transcript|length=639bp
AAACGACATAAACTTGAGAGACTTTAGAAAAGATTCttcattattgaaaa
agaaCACGACAAGCCTAGTTGAAGAAACATTTGACTCAAACATCACAAGA
AGTTGCATCGCTTTTTACGCACAAGATTcagaaaaaatgatgaaattctT
GTTCGTTATTGTTGCCTTAACAGTAATTTACGGATCGGCATTGGCAAAGC
CTACATACGAAGATGAATATGGTTACATGAATGTTAACACGAACGATATT
AttcgacaacaacaacaaaaagatcCATCATGCGGCGACAAAGCCccaaa
ttttgtttgcaatatGCAGTTCAATATTCATGATTTCTCGTGTCCTCAAG
ATGGTAGTTTCAATTTCGCTGAGAATTGCCGACATTTTTGTCGAAtgtgt
tgatatttttttttcaactgaaatttaaaaatattgaacatACTTTGTAT
TATATAAATGGAACAAAAAATTATTActaatattatttttcaataattaa
taGCATAGCCCTTGATAATTTAAGTTTCAATTTCAACTAAACTTCAAATT
GCGAACTAATATCCAATATTTCTTGAGGACACAACTGTACTTActtcttt
tatctttttatttagaaaatataaaaatatttcaaaaag
Run BLAST on NCBI

protein sequence of TCONS_00000160-protein

>TCONS_00000160-protein ID=TCONS_00000160-protein|Name=TCONS_00000160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
NDINLRDFRKDSSLLKKNTTSLVEETFDSNITRSCIAFYAQDSEKMMKFL
FVIVALTVIYGSALAKPTYEDEYGYMNVNTNDIIRQQQQKDPSCGDKAPN
FVCNMQFNIHDFSCPQDGSFNFAENCRHFCRMC
Run BLAST on NCBI

transcript from alignment at sc0000001:461388..464283-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000160 ID=TCONS_00000160|Name=TCONS_00000160|organism=Clytia hemisphaerica|type=transcript|length=2896bp|location=Sequence derived from alignment at sc0000001:461388..464283- (Clytia hemisphaerica)
AAACGACATAAACTTGAGAGACTTTAGAAAAGATTCTTCATTATTGAAAA
AGAACACGACAAGCCTAGTTGAAGAAACATTTGACTCAAACATCACAAGA
AGTTGCATCGCTTTTTACGCACAAGATTCAGAAAAAATGATGAAATTCTT
GTTCGTTATTGTTGCCTTAACAGTAATTTACGGTAAGGAAAACATTGATA
TAAATTTTATGCCATATTAAAGGAAACAATCTTGGCGGGATTTTGATTTG
TTAGGTCAAAGTTCTTTCAGAGGGAATTTAATTAGGCGGATGGTATAAAA
AAATTGAATTTGGCTGGATTTAAATTTGACGTATGAGATTTCTTTGATTG
AAAAAAAAGCTTATTTTGGCGGGTTTTGTTTGGCATATCCACCAAACTTC
TATACCGCCGAAGTATCTTCGTTTTAGATATGTTTTATGAGAGAGTAAAT
CTCGTACAAACAGAACTGCAAAGATCGGATAAATATTCGCTAGATTCTAT
TTCGTGAGCCAATTAAATGATATAATTTGATGAATTTATTACAGGCAGCG
ATTCGAAAATTTTGGGTTATGGGTTCAATATTCCGAATCAATAAATAGCC
ATTTAGTGATGGCCGTAAAAGCATCAATTTTCGTTAAAAATTGCTAATTT
CTTATTCCCAAAATCTGATTTTAAAGGTTTCGCGTGGAATTATTTTCGCG
AGTCAGCGATCTCAAAAGATTTTTGCGACATTTAAAAATACCGGTTAAAG
GTAGTTGAAAACTAAATTTTGGAATACTAGAGGCCTAATGAATATCAGAA
AAATATATATACTCTTCATTTGCTTTGGAATTTCAGGATCGGCATTGGCA
AAGCCTACATACGAAGATGGTAAGAATTTTCATAACACATATCTTTTTCA
TATGAGAATATAAGAGCACAATTGGCTCTTCCAGAAAATGTCCGTACATG
CCTTGTCCGGTAGGTAAATTTTCTCTGTCCAGGGGTAATTTGGGTTGTCC
GGGGGGTCAACTGATGCTTGTCGGAGGTAAAACCCGTTGTCCGCGGGGGC
AAAAGTCACTTTGTCCGGTTAAATCACTGAAAAATTTTATATCCTCCACC
CCCATATTCAATTTTTTTCTGGAAAAGCCCAATGCTTCGGTGTCAAATAT
TAAAGACCATTTTAGGAACAGTTTAAGGCTTTGCGCGGGCTCTAGAACAG
GCAGTTTCTGAAGTTTCTGAGGACAGGATTGTTGTTCTTAGGATTTGATC
AAGATTGAGGGCGATGTTCTTTTAAAGAGTGTAATATCTATCGTTTGCAT
CTTAAATGGTAGAATCTTACTCGGGTTAATTTCGTTTCTAGAAACACTGA
TGAATGGGCTTCCTCAAGGTAGGACTCAAAAAGTAACATTCGAATATGGT
CAATAACAATACGTTTTCGTTCACTTTCAAATAATCAGCGCCCTACGCTA
TCAAGGGTGCAGCAAAGCAATGGCCCCTCACTTTTTTTTCAAATAAAAAG
TCATTTTCAAAAGTATCACGATTTTATACTTTAAATGACTTCATTTTTGG
GCAAATCATCCTGAAAAGTGGCCGTTTTAATGCAAATTAGGGGGTAACAA
TCAAAATTTATTTTCTCTCGCTGGTGCAAAAAATGGCTGCGCTTCCTTTG
TCACTATAATTTTCAGATTAAGACATGGGCACAAATTTCAGTAAAGCCCG
AAAGACTAGATGGAGTGCTTTGACTGAAGAGTTTGCCGTGGTGACATTAC
AATATAATTTTAGCAGTTGACCAATAAGAAGCTTTGCGGATTTCCGAAAA
CAATAGCAACAATATTTTTTGAGATATTCACTTTTGCTTGTTTGGAAAAG
TTTAAAGTACTCTATTTAGCCATTCGGGCCTTACAGGAACTTGTAGGCAT
AGGCACTGTTAATTATTCTTTTGTTTACTTTCAATCTTATTTACATTATG
ATGAATTATTGAAAATCATTTTTTGATTTATTTTATCAATATTATTGATC
ATTGATACAGCCCGTGTATGGTAATAAAGGTCATATGAACATCATTGATA
CACATTGACTTAACATTCAAATTGAATGCTGTCTGATCTGCTAGTGTAAG
GCGAGACCAATTTGATTAGTTGATATACGGGCCCAACCATCCCTGAAATT
CTAAATATCAAAATAAAAATAAAAATAAAATCGATTTTGTACTACCATTT
CTATTTTCATTGCTTTACAGACTCCCAAATTTTAAAATTTTGGTAGTTTT
TTCAAGGTTTTGAGAATTTTATTTCCAGTTTTTCATTTTATCCATGAATT
CGAAATTTTATTTTCTATTTCGCATTTTTGTCAAGATTTAGTAGGTGAAA
ATCTACTTTTATTTTATCTTTTTCGCCGATCGACCGACCCTCTTTTTTGG
GTAGCTTGACCCCTAAAACAACAAATTAAATTGGCCTCGCCTGATAAAAA
TTTTTTACCTTAATATTTTTAGAATATGGTTACATGAATGTTAACACGAA
CGATATTATTCGACAACAACAACAAAAAGATCCATCATGCGGCGACAAAG
CCCCAAATTTTGTTTGCAATATGCAGTTCAATATTCATGATTTCTCGTGT
CCTCAAGATGGTAGTTTCAATTTCGCTGAGAATTGCCGACATTTTTGTCG
AATGTGTTGATATTTTTTTTTCAACTGAAATTTAAAAATATTGAACATAC
TTTGTATTATATAAATGGAACAAAAAATTATTACTAATATTATTTTTCAA
TAATTAATAGCATAGCCCTTGATAATTTAAGTTTCAATTTCAACTAAACT
TCAAATTGCGAACTAATATCCAATATTTCTTGAGGACACAACTGTACTTA
CTTCTTTTATCTTTTTATTTAGAAAATATAAAAATATTTCAAAAAG

Coding sequence (CDS) from alignment at sc0000001:461388..464283-

>TCONS_00000160 ID=TCONS_00000160|Name=TCONS_00000160|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000001:461388..464283- (Clytia hemisphaerica)
AATATGGTTACATGAATGTTAACACGAACGATATTATTCGACAACAACAA
CAAAAAGATCCATCATGCGGCGACAAAGCCCCAAATTTTGTTTGCAATAT
GCAGTTCAATATTCATGATTTCTCGTGTCCTCAAGATGGTAGTTTCAATT
TCGCTGAGAATTGCCGACATTTTTGTCGAATGTGTTGAGATCGGCATTGG
CAAAGCCTACATACGAAGATGAACGACATAAACTTGAGAGACTTTAGAAA
AGATTCTTCATTATTGAAAAAGAACACGACAAGCCTAGTTGAAGAAACAT
TTGACTCAAACATCACAAGAAGTTGCATCGCTTTTTACGCACAAGATTCA
GAAAAAATGATGAAATTCTTGTTCGTTATTGTTGCCTTAACAGTAATTTA
CGAATATGGTTACATGAATGTTAACACGAACGATATTATTCGACAACAAC
AACAAAAAGATCCATCATGCGGCGACAAAGCCCCAAATTTTGTTTGCAAT
ATGCAGTTCAATATTCATGATTTCTCGTGTCCTCAAGATGGTAGTTTCAA
TTTCGCTGAGAATTGCCGACATTTTTGTCGAATGTGTTGAGATCGGCATT
GGCAAAGCCTACATACGAAGATGAACGACATAAACTTGAGAGACTTTAGA
AAAGATTCTTCATTATTGAAAAAGAACACGACAAGCCTAGTTGAAGAAAC
ATTTGACTCAAACATCACAAGAAGTTGCATCGCTTTTTACGCACAAGATT
CAGAAAAAATGATGAAATTCTTGTTCGTTATTGTTGCCTTAACAGTAATT
TACGAATATGGTTACATGAATGTTAACACGAACGATATTATTCGACAACA
ACAACAAAAAGATCCATCATGCGGCGACAAAGCCCCAAATTTTGTTTGCA
ATATGCAGTTCAATATTCATGATTTCTCGTGTCCTCAAGATGGTAGTTTC
AATTTCGCTGAGAATTGCCGACATTTTTGTCGAATGTGTTGAGATCGGCA
TTGGCAAAGCCTACATACGAAGATGAACGACATAAACTTGAGAGACTTTA
GAAAAGATTCTTCATTATTGAAAAAGAACACGACAAGCCTAGTTGAAGAA
ACATTTGACTCAAACATCACAAGAAGTTGCATCGCTTTTTACGCACAAGA
TTCAGAAAAAATGATGAAATTCTTGTTCGTTATTGTTGCCTTAACAGTAA
TTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000093XLOC_000093Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000160-proteinTCONS_00000160-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000160-exon-sc0000001-1575043694:464102..464283TCONS_00000160-exon-sc0000001-1575043694:464102..464283Clytia hemisphaericaexon
TCONS_00000160-exon-sc0000001-1575043694:463415..463447TCONS_00000160-exon-sc0000001-1575043694:463415..463447Clytia hemisphaericaexon
TCONS_00000160-exon-sc0000001-1575043694:461388..461811TCONS_00000160-exon-sc0000001-1575043694:461388..461811Clytia hemisphaericaexon
TCONS_00000160-exon-sc0000001-1510915933:464102..464283TCONS_00000160-exon-sc0000001-1510915933:464102..464283Clytia hemisphaericaexon
TCONS_00000160-exon-sc0000001-1510915933:463415..463447TCONS_00000160-exon-sc0000001-1510915933:463415..463447Clytia hemisphaericaexon
TCONS_00000160-exon-sc0000001-1510915933:461388..461811TCONS_00000160-exon-sc0000001-1510915933:461388..461811Clytia hemisphaericaexon
TCONS_00000160-exon-sc0000001-1491911889:464102..464283TCONS_00000160-exon-sc0000001-1491911889:464102..464283Clytia hemisphaericaexon
TCONS_00000160-exon-sc0000001-1491911889:463415..463447TCONS_00000160-exon-sc0000001-1491911889:463415..463447Clytia hemisphaericaexon
TCONS_00000160-exon-sc0000001-1491911889:461388..461811TCONS_00000160-exon-sc0000001-1491911889:461388..461811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:461388..464283 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.160913	0.186836	0	0.111264	0	0.21215	0.198612	3.82396	0.430599	5.09899	21.1553	94.0513	84.1106	46.1471	37.9592	16.5992	29.5834	119.894	102.057	8.45582	5.71976	0.662201	1.20407	2.48034	2.52988	0.113133	0	0.0915756	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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