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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000157 ID=TCONS_00000157|Name=TCONS_00000157|organism=Clytia hemisphaerica|type=transcript|length=1894bp
TTCTTTCTTTATTATTTCAGTAATACAAAAAGTATAAAAGATAACAAAAC
TAGAATAAAAATGGTTAAGATTATAAATGGTGAAATTGTTCCAGATGACG
ATCCAAGAGCTCAGCGTTTCACACAGCAACAACAACGAAATAATCAGCCT
TTCCCAAACGCTTGGCAACGTGCCGGTAACCAAGGCAACCAGGCACAACC
TAAccgtcaacaacaacaacaacaacaacaacaaccctCTCCGCTCACAG
AAATAAATAACAGGCTGAGGGGGTTTGGAATTAATGATGTCAATATACAA
GGGAACGTTATAGAACCTATTTTCTTAGTTGCAGCTGTTTTAGCACTTGT
TTTCTATGGTTTTCCTGGTCTTTTAATTGTAGCAGTTGTTTGGTTTCTGA
CGACAAGGCAAAGATGAAGCACTGGTTTTGTTGGAAGTCATGATAGCACT
GTTTTCTATACACTTGCTTCAATTAGTCTTTTTATAACACCCGCCTGTCT
GACAGCCCTGGTGTAAATTCTACCCACAGTGGGGATACAATttttatcga
aatcccaatggggatagaaattatattgtctCAAGTTAAAAAATCGAGTG
Taggtggttttggagtgcaattttttggatgaaatcaaagtcaattttca
agtggggctgaaaatatggtatattttttccaccggagcCAAGTGGGgta
gcgggtctgtgacacgggtgTTTTATAGATAgggttttatttatttcatt
agATAGATAATTTTAAATCTTTGAATGCGGTTTTTGcaattatttttaca
tattCGTCTACCAATGTTTTGTAATATGACGCTATACTGCACcactcgct
tattcgaacttcattattcgaatcttcctataattcgaacttaccTGTCA
AAGAGAAACCCACTCGAAATACTTTCTATATTTCGAATGTTTCTCTCTAA
TTAGAACAAATAAGATTGTccgggacgagatggagtttttacaagctctt
atttgatttggttggtcgttaagcagtagcagtaataaaacaattttgtt
actttttctaaagaatgcgtcatttttatcacttcaaatgaccaattatt
aaagtatcttataaaaactccatctcatctggaagttcgaattagcaaga
GTCAACTGTAAAACCATTTTTGGAATTTCGTTAATCTTTTTAATGCCAAC
ATAATTGTCTTTCTTTGACGTCAAAGCGATAActtttttcaacccttttt
cAAGCAACGATTTAAAATTGCCAACTTTCAATTCATTTTTCTCCGCCTTT
CACATCAGACGGAGGCAAAGCATAAAACTGTAAGACATATGTCTGAGCTA
GGTTTAACAGCATAGAACTGTAAAAATTAGGCAAAATTAGGTTACATTTG
TTAAAACGGCGCGTTTTTACGAGAATCCCTGACATCGATAATTGAGTAAA
ATATATTGGACGGAGGATCGAGGCAAAAATTTATTCAGCATCTATGCATT
GTTATTGTTCATTCTTCTAATTGCTAATAATTAGgtgtaatttattttct
tttataattttatgattttagatATAAAATAATCCCTTGCTCTCAGTAAa
ggaaatattgaaaattgaaggATTTAAtgttatttgatatttttatgggT
CAAATGCgataaaatgccatttttttcaAGACAATGTTTTCTTGCTTATC
GATACTCTTGAAGCGTATCCCTTAGAGTCAACATACCTTCTTGTCGGTAG
AAAGTGTCGGAATTTTCATCGACGAATTTTTATAGTCGACGATTACTTTT
TACctgtaattaaatttttgctgaggaatgtttttttaagaaatgagTTT
TAATTACTCTCAACATTAATTTGTTTAAAAACTTTAGCACTAAA Run BLAST on NCBI protein sequence of TCONS_00000157-protein >TCONS_00000157-protein ID=TCONS_00000157-protein|Name=TCONS_00000157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
FFLYYFSNTKSIKDNKTRIKMVKIINGEIVPDDDPRAQRFTQQQQRNNQP
FPNAWQRAGNQGNQAQPNRQQQQQQQQQPSPLTEINNRLRGFGINDVNIQ
GNVIEPIFLVAAVLALVFYGFPGLLIVAVVWFLTTRQR Run BLAST on NCBI transcript from alignment at sc0000001:442654..444769- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000157 ID=TCONS_00000157|Name=TCONS_00000157|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at sc0000001:442654..444769- (Clytia hemisphaerica)
TTCTTTCTTTATTATTTCAGTAATACAAAAAGTATAAAAGATAACAAAAC
TAGAATAAAAATGGTTAAGATTATAAATGGTGAAATTGTTCCAGATGACG
ATCCAAGAGCTCAGCGTTTCACACAGCAACAACAACGAAATAATCAGCCT
TTCCCAAACGCTTGGCAACGTGCCGGTAACCAAGGCAACCAGGCACAACC
TAACCGTCAACAACAACAACAACAACAACAACAACCCTCTCCGCTCACAG
AAATAAATAACAGGCTGAGGGGGTTTGGAATTAATGATGTCAATATACAA
GGGAACGTTATAGAACCTATTTTCTTAGTTGCAGCTGTTTTAGCACTTGT
TTTCTATGGTTTTCCTGGTCTTTTAATTGTAGCAGTTGTTTGGTTTCTGA
CGACAAGGCAAAGATGAAGTAATGGTTTTGTTGGAAGTCATAGTAGCACT
GTTTTCTATACACTTTCTTCAATTAGTCTTTTTATAACACCCGCCTGTCT
GACAGCCCTGGTGTAAATTCTACCCACAGTGGGGATGCAATTTTTATCGA
AATCCCAATGGGGATAGAAATTCTATTGTCTCAAGTTAAAAAATCGAGTG
AGGATGGTTTTGGAGTGCAATTTTTNTAGGCAAAGATGAAGCACTGGTTT
TGTTGGAAGTCATGATAGCACTGTTTTCTATACACTTGCTTCAATTAGTC
TTTTTATAACACCCGCCTGTCTGACAGCCCTGGTGTAAATTCTACCCACA
GTGGGGATACAATTTTTATCGAAATCCCAATGGGGATAGAAATTATATTG
TCTCAAGTTAAAAAATCGAGTGTAGGTGGTTTTGGAGTGCAATTTTTTGG
ATGAAATCAAAGTCAATTTTCAAGTGGGGCTGAAAATATGGTATATTTTT
TCCACCGGAGCCAAGTGGGGTAGCGGGTCTGTGACACGGGTGTTTTATAG
ATAGGGTTTTATTTATTTCATTAGATAGATAATTTTAAATCTTTGAATGC
GGTTTTTGCAATTATTTTTACATATTCGTCTACCAATGTTTTGTAATATG
ACGCTATACTGCACCACTCGCTTATTCGAACTTCATTATTCGAATCTTCC
TATAATTCGAACTTACCTGTCAAAGAGAAACCCACTCGAAATACTTTCTA
TATTTCGAATGTTTCTCTCTAATTAGAACAAATAAGATTGTCCGGGACGA
GATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTAAGCAGTA
GCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAATGCGTCATTTTTA
TCACTTCAAATGACCAATTATTAAAGTATCTTATAAAAACTCCATCTCAT
CTGGAAGTTCGAATTAGCAAGAGTCAACTGTAAAACCATTTTTGGAATTT
CGTTAATCTTTTTAATGCCAACATAATTGTCTTTCTTTGACGTCAAAGCG
ATAACTTTTTTCAACCCTTTTTCAAGCAACGATTTAAAATTGCCAACTTT
CAATTCATTTTTCTCCGCCTTTCACATCAGACGGAGGCAAAGCATAAAAC
TGTAAGACATATGTCTGAGCTAGGTTTAACAGCATAGAACTGTAAAAATT
AGGCAAAATTAGGTTACATTTGTTAAAACGGCGCGTTTTTACGAGAATCC
CTGACATCGATAATTGAGTAAAATATATTGGACGGAGGATCGAGGCAAAA
ATTTATTCAGCATCTATGCATTGTTATTGTTCATTCTTCTAATTGCTAAT
AATTAGGTGTAATTTATTTTCTTTTATAATTTTATGATTTTAGATATAAA
ATAATCCCTTGCTCTCAGTAAAGGAAATATTGAAAATTGAAGGATTTAAT
GTTATTTGATATTTTTATGGGTCAAATGCGATAAAATGCCATTTTTTTCA
AGACAATGTTTTCTTGCTTATCGATACTCTTGAAGCGTATCCCTTAGAGT
CAACATACCTTCTTGTCGGTAGAAAGTGTCGGAATTTTCATCGACGAATT
TTTATAGTCGACGATTACTTTTTACCTGTAATTAAATTTTTGCTGAGGAA
TGTTTTTTTAAGAAATGAGTTTTAATTACTCTCAACATTAATTTGTTTAA
AAACTTTAGCACTAAA Coding sequence (CDS) from alignment at sc0000001:442654..444769- >TCONS_00000157 ID=TCONS_00000157|Name=TCONS_00000157|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0000001:442654..444769- (Clytia hemisphaerica)
GCAAAGATGATTCTTTCTTTATTATTTCAGTAATACAAAAAGTATAAAAG
ATAACAAAACTAGAATAAAAATGGTTAAGATTATAAATGGTGAAATTGTT
CCAGATGACGATCCAAGAGCTCAGCGTTTCACACAGCAACAACAACGAAA
TAATCAGCCTTTCCCAAACGCTTGGCAACGTGCCGGTAACCAAGGCAACC
AGGCACAACCTAACCGTCAACAACAACAACAACAACAACAACAACCCTCT
CCGCTCACAGAAATAAATAACAGGCTGAGGGGGTTTGGAATTAATGATGT
CAATATACAAGGGAACGTTATAGAACCTATTTTCTTAGTTGCAGCTGTTT
TAGCACTTGTTTTCTATGGTTTTCCTGGTCTTTTAATTGTAGCAGTTGTT
TGGTTTCTGACGACAAGGCAAAGATGATTCTTTCTTTATTATTTCAGTAA
TACAAAAAGTATAAAAGATAACAAAACTAGAATAAAAATGGTTAAGATTA
TAAATGGTGAAATTGTTCCAGATGACGATCCAAGAGCTCAGCGTTTCACA
CAGCAACAACAACGAAATAATCAGCCTTTCCCAAACGCTTGGCAACGTGC
CGGTAACCAAGGCAACCAGGCACAACCTAACCGTCAACAACAACAACAAC
AACAACAACAACCCTCTCCGCTCACAGAAATAAATAACAGGCTGAGGGGG
TTTGGAATTAATGATGTCAATATACAAGGGAACGTTATAGAACCTATTTT
CTTAGTTGCAGCTGTTTTAGCACTTGTTTTCTATGGTTTTCCTGGTCTTT
TAATTGTAGCAGTTGTTTGGTTTCTGACGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000157-exon-sc0000001-1575043694:444363..444769 | TCONS_00000157-exon-sc0000001-1575043694:444363..444769 | Clytia hemisphaerica | exon |
| TCONS_00000157-exon-sc0000001-1575043694:442654..444140 | TCONS_00000157-exon-sc0000001-1575043694:442654..444140 | Clytia hemisphaerica | exon |
| TCONS_00000157-exon-sc0000001-1510915933:444363..444769 | TCONS_00000157-exon-sc0000001-1510915933:444363..444769 | Clytia hemisphaerica | exon |
| TCONS_00000157-exon-sc0000001-1510915933:442654..444140 | TCONS_00000157-exon-sc0000001-1510915933:442654..444140 | Clytia hemisphaerica | exon |
| TCONS_00000157-exon-sc0000001-1491911889:444363..444769 | TCONS_00000157-exon-sc0000001-1491911889:444363..444769 | Clytia hemisphaerica | exon |
| TCONS_00000157-exon-sc0000001-1491911889:442654..444140 | TCONS_00000157-exon-sc0000001-1491911889:442654..444140 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:442654..444769 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027953 | DUF4605 |
Blast
The following BLAST results are available for this feature:
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