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TCONS_00000157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000157
Unique NameTCONS_00000157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000157 ID=TCONS_00000157|Name=TCONS_00000157|organism=Clytia hemisphaerica|type=transcript|length=1894bp
TTCTTTCTTTATTATTTCAGTAATACAAAAAGTATAAAAGATAACAAAAC
TAGAATAAAAATGGTTAAGATTATAAATGGTGAAATTGTTCCAGATGACG
ATCCAAGAGCTCAGCGTTTCACACAGCAACAACAACGAAATAATCAGCCT
TTCCCAAACGCTTGGCAACGTGCCGGTAACCAAGGCAACCAGGCACAACC
TAAccgtcaacaacaacaacaacaacaacaacaaccctCTCCGCTCACAG
AAATAAATAACAGGCTGAGGGGGTTTGGAATTAATGATGTCAATATACAA
GGGAACGTTATAGAACCTATTTTCTTAGTTGCAGCTGTTTTAGCACTTGT
TTTCTATGGTTTTCCTGGTCTTTTAATTGTAGCAGTTGTTTGGTTTCTGA
CGACAAGGCAAAGATGAAGCACTGGTTTTGTTGGAAGTCATGATAGCACT
GTTTTCTATACACTTGCTTCAATTAGTCTTTTTATAACACCCGCCTGTCT
GACAGCCCTGGTGTAAATTCTACCCACAGTGGGGATACAATttttatcga
aatcccaatggggatagaaattatattgtctCAAGTTAAAAAATCGAGTG
Taggtggttttggagtgcaattttttggatgaaatcaaagtcaattttca
agtggggctgaaaatatggtatattttttccaccggagcCAAGTGGGgta
gcgggtctgtgacacgggtgTTTTATAGATAgggttttatttatttcatt
agATAGATAATTTTAAATCTTTGAATGCGGTTTTTGcaattatttttaca
tattCGTCTACCAATGTTTTGTAATATGACGCTATACTGCACcactcgct
tattcgaacttcattattcgaatcttcctataattcgaacttaccTGTCA
AAGAGAAACCCACTCGAAATACTTTCTATATTTCGAATGTTTCTCTCTAA
TTAGAACAAATAAGATTGTccgggacgagatggagtttttacaagctctt
atttgatttggttggtcgttaagcagtagcagtaataaaacaattttgtt
actttttctaaagaatgcgtcatttttatcacttcaaatgaccaattatt
aaagtatcttataaaaactccatctcatctggaagttcgaattagcaaga
GTCAACTGTAAAACCATTTTTGGAATTTCGTTAATCTTTTTAATGCCAAC
ATAATTGTCTTTCTTTGACGTCAAAGCGATAActtttttcaacccttttt
cAAGCAACGATTTAAAATTGCCAACTTTCAATTCATTTTTCTCCGCCTTT
CACATCAGACGGAGGCAAAGCATAAAACTGTAAGACATATGTCTGAGCTA
GGTTTAACAGCATAGAACTGTAAAAATTAGGCAAAATTAGGTTACATTTG
TTAAAACGGCGCGTTTTTACGAGAATCCCTGACATCGATAATTGAGTAAA
ATATATTGGACGGAGGATCGAGGCAAAAATTTATTCAGCATCTATGCATT
GTTATTGTTCATTCTTCTAATTGCTAATAATTAGgtgtaatttattttct
tttataattttatgattttagatATAAAATAATCCCTTGCTCTCAGTAAa
ggaaatattgaaaattgaaggATTTAAtgttatttgatatttttatgggT
CAAATGCgataaaatgccatttttttcaAGACAATGTTTTCTTGCTTATC
GATACTCTTGAAGCGTATCCCTTAGAGTCAACATACCTTCTTGTCGGTAG
AAAGTGTCGGAATTTTCATCGACGAATTTTTATAGTCGACGATTACTTTT
TACctgtaattaaatttttgctgaggaatgtttttttaagaaatgagTTT
TAATTACTCTCAACATTAATTTGTTTAAAAACTTTAGCACTAAA
Run BLAST on NCBI

protein sequence of TCONS_00000157-protein

>TCONS_00000157-protein ID=TCONS_00000157-protein|Name=TCONS_00000157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
FFLYYFSNTKSIKDNKTRIKMVKIINGEIVPDDDPRAQRFTQQQQRNNQP
FPNAWQRAGNQGNQAQPNRQQQQQQQQQPSPLTEINNRLRGFGINDVNIQ
GNVIEPIFLVAAVLALVFYGFPGLLIVAVVWFLTTRQR
Run BLAST on NCBI

transcript from alignment at sc0000001:442654..444769-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000157 ID=TCONS_00000157|Name=TCONS_00000157|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at sc0000001:442654..444769- (Clytia hemisphaerica)
TTCTTTCTTTATTATTTCAGTAATACAAAAAGTATAAAAGATAACAAAAC TAGAATAAAAATGGTTAAGATTATAAATGGTGAAATTGTTCCAGATGACG ATCCAAGAGCTCAGCGTTTCACACAGCAACAACAACGAAATAATCAGCCT TTCCCAAACGCTTGGCAACGTGCCGGTAACCAAGGCAACCAGGCACAACC TAACCGTCAACAACAACAACAACAACAACAACAACCCTCTCCGCTCACAG AAATAAATAACAGGCTGAGGGGGTTTGGAATTAATGATGTCAATATACAA GGGAACGTTATAGAACCTATTTTCTTAGTTGCAGCTGTTTTAGCACTTGT TTTCTATGGTTTTCCTGGTCTTTTAATTGTAGCAGTTGTTTGGTTTCTGA CGACAAGGCAAAGATGAAGTAATGGTTTTGTTGGAAGTCATAGTAGCACT GTTTTCTATACACTTTCTTCAATTAGTCTTTTTATAACACCCGCCTGTCT GACAGCCCTGGTGTAAATTCTACCCACAGTGGGGATGCAATTTTTATCGA AATCCCAATGGGGATAGAAATTCTATTGTCTCAAGTTAAAAAATCGAGTG AGGATGGTTTTGGAGTGCAATTTTTNTAGGCAAAGATGAAGCACTGGTTT TGTTGGAAGTCATGATAGCACTGTTTTCTATACACTTGCTTCAATTAGTC TTTTTATAACACCCGCCTGTCTGACAGCCCTGGTGTAAATTCTACCCACA GTGGGGATACAATTTTTATCGAAATCCCAATGGGGATAGAAATTATATTG TCTCAAGTTAAAAAATCGAGTGTAGGTGGTTTTGGAGTGCAATTTTTTGG ATGAAATCAAAGTCAATTTTCAAGTGGGGCTGAAAATATGGTATATTTTT TCCACCGGAGCCAAGTGGGGTAGCGGGTCTGTGACACGGGTGTTTTATAG ATAGGGTTTTATTTATTTCATTAGATAGATAATTTTAAATCTTTGAATGC GGTTTTTGCAATTATTTTTACATATTCGTCTACCAATGTTTTGTAATATG ACGCTATACTGCACCACTCGCTTATTCGAACTTCATTATTCGAATCTTCC TATAATTCGAACTTACCTGTCAAAGAGAAACCCACTCGAAATACTTTCTA TATTTCGAATGTTTCTCTCTAATTAGAACAAATAAGATTGTCCGGGACGA GATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTAAGCAGTA GCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAATGCGTCATTTTTA TCACTTCAAATGACCAATTATTAAAGTATCTTATAAAAACTCCATCTCAT CTGGAAGTTCGAATTAGCAAGAGTCAACTGTAAAACCATTTTTGGAATTT CGTTAATCTTTTTAATGCCAACATAATTGTCTTTCTTTGACGTCAAAGCG ATAACTTTTTTCAACCCTTTTTCAAGCAACGATTTAAAATTGCCAACTTT CAATTCATTTTTCTCCGCCTTTCACATCAGACGGAGGCAAAGCATAAAAC TGTAAGACATATGTCTGAGCTAGGTTTAACAGCATAGAACTGTAAAAATT AGGCAAAATTAGGTTACATTTGTTAAAACGGCGCGTTTTTACGAGAATCC CTGACATCGATAATTGAGTAAAATATATTGGACGGAGGATCGAGGCAAAA ATTTATTCAGCATCTATGCATTGTTATTGTTCATTCTTCTAATTGCTAAT AATTAGGTGTAATTTATTTTCTTTTATAATTTTATGATTTTAGATATAAA ATAATCCCTTGCTCTCAGTAAAGGAAATATTGAAAATTGAAGGATTTAAT GTTATTTGATATTTTTATGGGTCAAATGCGATAAAATGCCATTTTTTTCA AGACAATGTTTTCTTGCTTATCGATACTCTTGAAGCGTATCCCTTAGAGT CAACATACCTTCTTGTCGGTAGAAAGTGTCGGAATTTTCATCGACGAATT TTTATAGTCGACGATTACTTTTTACCTGTAATTAAATTTTTGCTGAGGAA TGTTTTTTTAAGAAATGAGTTTTAATTACTCTCAACATTAATTTGTTTAA AAACTTTAGCACTAAA

Coding sequence (CDS) from alignment at sc0000001:442654..444769-

>TCONS_00000157 ID=TCONS_00000157|Name=TCONS_00000157|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0000001:442654..444769- (Clytia hemisphaerica)
GCAAAGATGATTCTTTCTTTATTATTTCAGTAATACAAAAAGTATAAAAG
ATAACAAAACTAGAATAAAAATGGTTAAGATTATAAATGGTGAAATTGTT
CCAGATGACGATCCAAGAGCTCAGCGTTTCACACAGCAACAACAACGAAA
TAATCAGCCTTTCCCAAACGCTTGGCAACGTGCCGGTAACCAAGGCAACC
AGGCACAACCTAACCGTCAACAACAACAACAACAACAACAACAACCCTCT
CCGCTCACAGAAATAAATAACAGGCTGAGGGGGTTTGGAATTAATGATGT
CAATATACAAGGGAACGTTATAGAACCTATTTTCTTAGTTGCAGCTGTTT
TAGCACTTGTTTTCTATGGTTTTCCTGGTCTTTTAATTGTAGCAGTTGTT
TGGTTTCTGACGACAAGGCAAAGATGATTCTTTCTTTATTATTTCAGTAA
TACAAAAAGTATAAAAGATAACAAAACTAGAATAAAAATGGTTAAGATTA
TAAATGGTGAAATTGTTCCAGATGACGATCCAAGAGCTCAGCGTTTCACA
CAGCAACAACAACGAAATAATCAGCCTTTCCCAAACGCTTGGCAACGTGC
CGGTAACCAAGGCAACCAGGCACAACCTAACCGTCAACAACAACAACAAC
AACAACAACAACCCTCTCCGCTCACAGAAATAAATAACAGGCTGAGGGGG
TTTGGAATTAATGATGTCAATATACAAGGGAACGTTATAGAACCTATTTT
CTTAGTTGCAGCTGTTTTAGCACTTGTTTTCTATGGTTTTCCTGGTCTTT
TAATTGTAGCAGTTGTTTGGTTTCTGACGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000091XLOC_000091Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000157-proteinTCONS_00000157-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000157-exon-sc0000001-1575043694:444363..444769TCONS_00000157-exon-sc0000001-1575043694:444363..444769Clytia hemisphaericaexon
TCONS_00000157-exon-sc0000001-1575043694:442654..444140TCONS_00000157-exon-sc0000001-1575043694:442654..444140Clytia hemisphaericaexon
TCONS_00000157-exon-sc0000001-1510915933:444363..444769TCONS_00000157-exon-sc0000001-1510915933:444363..444769Clytia hemisphaericaexon
TCONS_00000157-exon-sc0000001-1510915933:442654..444140TCONS_00000157-exon-sc0000001-1510915933:442654..444140Clytia hemisphaericaexon
TCONS_00000157-exon-sc0000001-1491911889:444363..444769TCONS_00000157-exon-sc0000001-1491911889:444363..444769Clytia hemisphaericaexon
TCONS_00000157-exon-sc0000001-1491911889:442654..444140TCONS_00000157-exon-sc0000001-1491911889:442654..444140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:442654..444769 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.77516 5.08205 7.86481 8.86196 4.86379 4.51798 7.72002 8.72728 8.13422 8.26313 5.06689 3.10944 3.2605 2.7559 4.68902 4.19127 7.88546 5.40378 1.0984 2.16068 3.51147 3.8012 8.08839 9.14233 3.89073 4.60559 7.01588 5.10181 9.92226 9.32538
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027953DUF4605
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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