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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000155 ID=TCONS_00000155|Name=TCONS_00000155|organism=Clytia hemisphaerica|type=transcript|length=603bp
GCATTGGTGAAGTTTATTGTCATGTATGGAAGAACTTTTACAACAATCCC
ACATTTACAGTTCAATATCATGTCTGGATTCTAGTTTTGGATACAATACT
TGTTGTATTGATTGCCATTTTGTGGATCTCGACGATGTTCACTTCATGTT
CCGCTATCAAGAAGTCATTTGAAAGAAAGATAACAATGAGGCCATCTGTA
AACGAAACTGAAGTTGAAAGACAAAAACGAAAACTacaagaaaaacattt
gatGCAAATGTTTGGTctcatgtttttcatttttgctgtcGCATTCATCC
CAAGTTTGATTTTCTGGTTTATGGATAACAAAGGACTTTACCAAGAGAAT
CCAGAAGTAATCATTGCATGGCATTGCTCCTCAACAACATTCGCATTATC
ATCTGTTTGCAATCCGCTGTTCATGCTGTATTATGCACCAGATTTCAAGa
gaagtttcaaaagttttaaaaagcaGTTGCAACGTACTCTAACGGGAGAG
ACAACAACAGCATCAGAGATAGTATCGGAGAATACtgatgaaaatagaaa
taacaccAGTGGTAAATACATTGTGAATGGAGAAACAACAGCATCAGAGA
TGG Run BLAST on NCBI protein sequence of TCONS_00000155-protein >TCONS_00000155-protein ID=TCONS_00000155-protein|Name=TCONS_00000155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
IGEVYCHVWKNFYNNPTFTVQYHVWILVLDTILVVLIAILWISTMFTSCS
AIKKSFERKITMRPSVNETEVERQKRKLQEKHLMQMFGLMFFIFAVAFIP
SLIFWFMDNKGLYQENPEVIIAWHCSSTTFALSSVCNPLFMLYYAPDFKR
SFKSFKKQLQRTLTGETTTASEIVSENTDENRNNTSGKYIVNGETTASEM Run BLAST on NCBI transcript from alignment at sc0000001:380905..383156- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000155 ID=TCONS_00000155|Name=TCONS_00000155|organism=Clytia hemisphaerica|type=transcript|length=2252bp|location=Sequence derived from alignment at sc0000001:380905..383156- (Clytia hemisphaerica)
GCATTGGTGAAGTTTATTGTCATGTATGGAAGAACTTTTACAACAATCCC
ACATTTACAGTTCAATATCATGTCTGGATTCTAGTTTTGGATACAATACT
TGTTGTATTGATTGCCATTTTGTGGATCTCGACGATGTTCACTTCATGTT
CCGCTATCAAGAAGTCATTTGAAAGGTAATTTTTTATAAAGTTTTTTACC
TTCATTTTTAAGTTACCCATTTCCGCACTAAGATTCTTTTGTCATTTTTC
TAACAGAAAAAGACTAGGACTTTAAAGACTTTCTTTAAGAATCCACTTCC
CCGGGTCATCAGATAGATGAATTTAGCTTTTCGGGTAAGGAAACGGCCCA
GTGGGGGACACGGGGACGTGCTACTGGTCAGGTCTTCTTTAGGCTCTGAT
GATATCTGACAGGGTCCCAAATTTACCGATTCTCAAGATGTGTATTTGAC
AATTTCCAGGGAAGCATTAAAAAAAGATTTTTAATTTTTCGTCTACTTTT
AGTCATTTTGGCCACATTTAAGGGTGAAAATGGGAAAAATTTTCGACTTT
TCTTTCTCCCTGACAGGGTCCCAAATTCACCGAATATTCATATTTGAAAG
GGTCCATTTTTTAAACTCCAGTGGCATGTCCTCGTCAGCCGTAAGGTTGG
TGCCCCCCGGGGGGGGGGACGTCTTTCGACTGTTTGGTTAACCTATCGAA
TATTTCTACAATTCGTGGGTCAATCATGGGTCCTTGGCCACCTGAAGACC
ACGAAGTAAGACTTTCTATAGAAATCCTACCCCGGACTATGAGATTAGGT
ACTGAAACGGCTATTTGATTACGTAGCATGAAGGTAGAGCATCCGCAAAT
TTTTTTTCCGTACATGGACGGAAGTATCATCGACGGTCGGGAGTATCTCA
TCTTGACGGTCGGGAATATCATCGACGGGCAGGAGTATCTTAAACTTATC
TTAAACCTTGAAATATCGACCCGACCGGGGTTCGAGCCCACCAAATTAAT
GAAAGAGTTTCTGATAAGAAACCCAGCGCGCTATCCGTTGAGCCACACTT
GCACAGCAGAACACAAAATTTGGAAATACTTAAAGAATGACAAAAAAGAC
GGTAAAATTGCCCCTTTTTCAACCTGACTGAAATTCGAGCCGTTACTAGC
AACCCTGCGGGGCCCAAGGCGCCGAGTATGCACCCGACACAGTGACAAGC
CGTTACTAGCAACCCTGACCTAAGCAATTCCAAACAACAAAACCAAACAA
CAAAGATGAGATACTCCCGTCCGTCGATGATACTCCCGTCCATGCACGGA
TAAGAAAATTTGCAGAGAGCATCCAGCTTCGGTGTGCAAAGTTGTGGGTT
TGATCCCCAGCCGGGTCAGTCAAAACATTCCCAAAATGGTACTTGATGCC
TCACTGCTTGATGCTCAATACCGAGTTTATGTATCGGGGGATATCGAGGG
CGACGGTAAGTGAAATCGATACAAAAACAAAGTCGATAGTTGATGTACGG
CTCTATATCGCCTTTGCTCACCTAAACAGACGACGGTATCTTGGTGTTTT
TACCGTCGTCGAGCAAAGTGGATGGTGATTTCGGTCCTATGTCAGCTTTG
CTTTATACCGTCGCCCTCGATTTATCTTGAATACATAAACTCTCTAGTAA
CTAATAAGAGACGGATCTGGGATAGGTGGAGAAATCCAGGGAAAGGAGTG
GCGCCCTCCCCTATCTTCGGGTAAACAGCTAGAGAAAAGGGAGCCTTCGG
GTCGCCCTCAACTGCGGTCGTAACCTTACTTACTTACTTACTTACTAAAT
CATTGAATATACTTCCTTTTTTAGAAAGATAACAATGAGGCCATCTGTAA
ACGAAACTGAAGTTGAAAGACAAAAACGAAAACTACAAGAAAAACATTTG
ATGCAAATGTTTGGTCTCATGTTTTTCATTTTTGCTGTCGCATTCATCCC
AAGTTTGATTTTCTGGTTTATGGATAACAAAGGACTTTACCAAGAGAATC
CAGAAGTAATCATTGCATGGCATTGCTCCTCAACAACATTCGCATTATCA
TCTGTTTGCAATCCGCTGTTCATGCTGTATTATGCACCAGATTTCAAGAG
AAGTTTCAAAAGTTTTAAAAAGCAGTTGCAACGTACTCTAACGGGAGAGA
CAACAACAGCATCAGAGATAGTATCGGAGAATACTGATGAAAATAGAAAT
AACACCAGTGGTAAATACATTGTGAATGGAGAAACAACAGCATCAGAGAT
GG Coding sequence (CDS) from alignment at sc0000001:380905..383156- >TCONS_00000155 ID=TCONS_00000155|Name=TCONS_00000155|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0000001:380905..383156- (Clytia hemisphaerica)
AAAGATAACAATGAGGCCATCTGTAAACGAAACTGAAGTTGAAAGACAAA
AACGAAAACTACAAGAAAAACATTTGATGCAAATGTTTGGTCTCATGTTT
TTCATTTTTGCTGTCGCATTCATCCCAAGTTTGATTTTCTGGTTTATGGA
TAACAAAGGACTTTACCAAGAGAATCCAGAAGTAATCATTGCATGGCATT
GCTCCTCAACAACATTCGCATTATCATCTGTTTGCAATCCGCTGTTCATG
CTGTATTATGCACCAGATTTCAAGAGAAGTTTCAAAAGTTTTAAAAAGCA
GTTGCAACGTACTCTAACGGGAGAGACAACAACAGCATCAGAGATAGTAT
CGGAGAATACTGATGAAAATAGAAATAACACCAGTGGTAAATACATTGTG
AATGGAGAAACAACAGCATCAGAGATGATTGGTGAAGTTTATTGTCATGT
ATGGAAGAACTTTTACAACAATCCCACATTTACAGTTCAATATCATGTCT
GGATTCTAGTTTTGGATACAATACTTGTTGTATTGATTGCCATTTTGTGG
ATCTCGACGATGTTCACTTCATGTTCCGCTATCAAGAAGTCATTTGAAAG
AAAGATAACAATGAGGCCATCTGTAAACGAAACTGAAGTTGAAAGACAAA
AACGAAAACTACAAGAAAAACATTTGATGCAAATGTTTGGTCTCATGTTT
TTCATTTTTGCTGTCGCATTCATCCCAAGTTTGATTTTCTGGTTTATGGA
TAACAAAGGACTTTACCAAGAGAATCCAGAAGTAATCATTGCATGGCATT
GCTCCTCAACAACATTCGCATTATCATCTGTTTGCAATCCGCTGTTCATG
CTGTATTATGCACCAGATTTCAAGAGAAGTTTCAAAAGTTTTAAAAAGCA
GTTGCAACGTACTCTAACGGGAGAGACAACAACAGCATCAGAGATAGTAT
CGGAGAATACTGATGAAAATAGAAATAACACCAGTGGTAAATACATTGTG
AATGGAGAAACAACAGCATCAGAGATGATTGGTGAAGTTTATTGTCATGT
ATGGAAGAACTTTTACAACAATCCCACATTTACAGTTCAATATCATGTCT
GGATTCTAGTTTTGGATACAATACTTGTTGTATTGATTGCCATTTTGTGG
ATCTCGACGATGTTCACTTCATGTTCCGCTATCAAGAAGTCATTTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000155-exon-sc0000001-1575043694:382982..383156 | TCONS_00000155-exon-sc0000001-1575043694:382982..383156 | Clytia hemisphaerica | exon |
| TCONS_00000155-exon-sc0000001-1575043694:380905..381332 | TCONS_00000155-exon-sc0000001-1575043694:380905..381332 | Clytia hemisphaerica | exon |
| TCONS_00000155-exon-sc0000001-1510915933:382982..383156 | TCONS_00000155-exon-sc0000001-1510915933:382982..383156 | Clytia hemisphaerica | exon |
| TCONS_00000155-exon-sc0000001-1510915933:380905..381332 | TCONS_00000155-exon-sc0000001-1510915933:380905..381332 | Clytia hemisphaerica | exon |
| TCONS_00000155-exon-sc0000001-1491911889:382982..383156 | TCONS_00000155-exon-sc0000001-1491911889:382982..383156 | Clytia hemisphaerica | exon |
| TCONS_00000155-exon-sc0000001-1491911889:380905..381332 | TCONS_00000155-exon-sc0000001-1491911889:380905..381332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:380905..383156 - |
Blast
The following BLAST results are available for this feature:
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