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TCONS_00000155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000155
Unique NameTCONS_00000155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000155 ID=TCONS_00000155|Name=TCONS_00000155|organism=Clytia hemisphaerica|type=transcript|length=603bp
GCATTGGTGAAGTTTATTGTCATGTATGGAAGAACTTTTACAACAATCCC
ACATTTACAGTTCAATATCATGTCTGGATTCTAGTTTTGGATACAATACT
TGTTGTATTGATTGCCATTTTGTGGATCTCGACGATGTTCACTTCATGTT
CCGCTATCAAGAAGTCATTTGAAAGAAAGATAACAATGAGGCCATCTGTA
AACGAAACTGAAGTTGAAAGACAAAAACGAAAACTacaagaaaaacattt
gatGCAAATGTTTGGTctcatgtttttcatttttgctgtcGCATTCATCC
CAAGTTTGATTTTCTGGTTTATGGATAACAAAGGACTTTACCAAGAGAAT
CCAGAAGTAATCATTGCATGGCATTGCTCCTCAACAACATTCGCATTATC
ATCTGTTTGCAATCCGCTGTTCATGCTGTATTATGCACCAGATTTCAAGa
gaagtttcaaaagttttaaaaagcaGTTGCAACGTACTCTAACGGGAGAG
ACAACAACAGCATCAGAGATAGTATCGGAGAATACtgatgaaaatagaaa
taacaccAGTGGTAAATACATTGTGAATGGAGAAACAACAGCATCAGAGA
TGG
Run BLAST on NCBI

protein sequence of TCONS_00000155-protein

>TCONS_00000155-protein ID=TCONS_00000155-protein|Name=TCONS_00000155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
IGEVYCHVWKNFYNNPTFTVQYHVWILVLDTILVVLIAILWISTMFTSCS
AIKKSFERKITMRPSVNETEVERQKRKLQEKHLMQMFGLMFFIFAVAFIP
SLIFWFMDNKGLYQENPEVIIAWHCSSTTFALSSVCNPLFMLYYAPDFKR
SFKSFKKQLQRTLTGETTTASEIVSENTDENRNNTSGKYIVNGETTASEM
Run BLAST on NCBI

transcript from alignment at sc0000001:380905..383156-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000155 ID=TCONS_00000155|Name=TCONS_00000155|organism=Clytia hemisphaerica|type=transcript|length=2252bp|location=Sequence derived from alignment at sc0000001:380905..383156- (Clytia hemisphaerica)
GCATTGGTGAAGTTTATTGTCATGTATGGAAGAACTTTTACAACAATCCC ACATTTACAGTTCAATATCATGTCTGGATTCTAGTTTTGGATACAATACT TGTTGTATTGATTGCCATTTTGTGGATCTCGACGATGTTCACTTCATGTT CCGCTATCAAGAAGTCATTTGAAAGGTAATTTTTTATAAAGTTTTTTACC TTCATTTTTAAGTTACCCATTTCCGCACTAAGATTCTTTTGTCATTTTTC TAACAGAAAAAGACTAGGACTTTAAAGACTTTCTTTAAGAATCCACTTCC CCGGGTCATCAGATAGATGAATTTAGCTTTTCGGGTAAGGAAACGGCCCA GTGGGGGACACGGGGACGTGCTACTGGTCAGGTCTTCTTTAGGCTCTGAT GATATCTGACAGGGTCCCAAATTTACCGATTCTCAAGATGTGTATTTGAC AATTTCCAGGGAAGCATTAAAAAAAGATTTTTAATTTTTCGTCTACTTTT AGTCATTTTGGCCACATTTAAGGGTGAAAATGGGAAAAATTTTCGACTTT TCTTTCTCCCTGACAGGGTCCCAAATTCACCGAATATTCATATTTGAAAG GGTCCATTTTTTAAACTCCAGTGGCATGTCCTCGTCAGCCGTAAGGTTGG TGCCCCCCGGGGGGGGGGACGTCTTTCGACTGTTTGGTTAACCTATCGAA TATTTCTACAATTCGTGGGTCAATCATGGGTCCTTGGCCACCTGAAGACC ACGAAGTAAGACTTTCTATAGAAATCCTACCCCGGACTATGAGATTAGGT ACTGAAACGGCTATTTGATTACGTAGCATGAAGGTAGAGCATCCGCAAAT TTTTTTTCCGTACATGGACGGAAGTATCATCGACGGTCGGGAGTATCTCA TCTTGACGGTCGGGAATATCATCGACGGGCAGGAGTATCTTAAACTTATC TTAAACCTTGAAATATCGACCCGACCGGGGTTCGAGCCCACCAAATTAAT GAAAGAGTTTCTGATAAGAAACCCAGCGCGCTATCCGTTGAGCCACACTT GCACAGCAGAACACAAAATTTGGAAATACTTAAAGAATGACAAAAAAGAC GGTAAAATTGCCCCTTTTTCAACCTGACTGAAATTCGAGCCGTTACTAGC AACCCTGCGGGGCCCAAGGCGCCGAGTATGCACCCGACACAGTGACAAGC CGTTACTAGCAACCCTGACCTAAGCAATTCCAAACAACAAAACCAAACAA CAAAGATGAGATACTCCCGTCCGTCGATGATACTCCCGTCCATGCACGGA TAAGAAAATTTGCAGAGAGCATCCAGCTTCGGTGTGCAAAGTTGTGGGTT TGATCCCCAGCCGGGTCAGTCAAAACATTCCCAAAATGGTACTTGATGCC TCACTGCTTGATGCTCAATACCGAGTTTATGTATCGGGGGATATCGAGGG CGACGGTAAGTGAAATCGATACAAAAACAAAGTCGATAGTTGATGTACGG CTCTATATCGCCTTTGCTCACCTAAACAGACGACGGTATCTTGGTGTTTT TACCGTCGTCGAGCAAAGTGGATGGTGATTTCGGTCCTATGTCAGCTTTG CTTTATACCGTCGCCCTCGATTTATCTTGAATACATAAACTCTCTAGTAA CTAATAAGAGACGGATCTGGGATAGGTGGAGAAATCCAGGGAAAGGAGTG GCGCCCTCCCCTATCTTCGGGTAAACAGCTAGAGAAAAGGGAGCCTTCGG GTCGCCCTCAACTGCGGTCGTAACCTTACTTACTTACTTACTTACTAAAT CATTGAATATACTTCCTTTTTTAGAAAGATAACAATGAGGCCATCTGTAA ACGAAACTGAAGTTGAAAGACAAAAACGAAAACTACAAGAAAAACATTTG ATGCAAATGTTTGGTCTCATGTTTTTCATTTTTGCTGTCGCATTCATCCC AAGTTTGATTTTCTGGTTTATGGATAACAAAGGACTTTACCAAGAGAATC CAGAAGTAATCATTGCATGGCATTGCTCCTCAACAACATTCGCATTATCA TCTGTTTGCAATCCGCTGTTCATGCTGTATTATGCACCAGATTTCAAGAG AAGTTTCAAAAGTTTTAAAAAGCAGTTGCAACGTACTCTAACGGGAGAGA CAACAACAGCATCAGAGATAGTATCGGAGAATACTGATGAAAATAGAAAT AACACCAGTGGTAAATACATTGTGAATGGAGAAACAACAGCATCAGAGAT GG

Coding sequence (CDS) from alignment at sc0000001:380905..383156-

>TCONS_00000155 ID=TCONS_00000155|Name=TCONS_00000155|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0000001:380905..383156- (Clytia hemisphaerica)
AAAGATAACAATGAGGCCATCTGTAAACGAAACTGAAGTTGAAAGACAAA
AACGAAAACTACAAGAAAAACATTTGATGCAAATGTTTGGTCTCATGTTT
TTCATTTTTGCTGTCGCATTCATCCCAAGTTTGATTTTCTGGTTTATGGA
TAACAAAGGACTTTACCAAGAGAATCCAGAAGTAATCATTGCATGGCATT
GCTCCTCAACAACATTCGCATTATCATCTGTTTGCAATCCGCTGTTCATG
CTGTATTATGCACCAGATTTCAAGAGAAGTTTCAAAAGTTTTAAAAAGCA
GTTGCAACGTACTCTAACGGGAGAGACAACAACAGCATCAGAGATAGTAT
CGGAGAATACTGATGAAAATAGAAATAACACCAGTGGTAAATACATTGTG
AATGGAGAAACAACAGCATCAGAGATGATTGGTGAAGTTTATTGTCATGT
ATGGAAGAACTTTTACAACAATCCCACATTTACAGTTCAATATCATGTCT
GGATTCTAGTTTTGGATACAATACTTGTTGTATTGATTGCCATTTTGTGG
ATCTCGACGATGTTCACTTCATGTTCCGCTATCAAGAAGTCATTTGAAAG
AAAGATAACAATGAGGCCATCTGTAAACGAAACTGAAGTTGAAAGACAAA
AACGAAAACTACAAGAAAAACATTTGATGCAAATGTTTGGTCTCATGTTT
TTCATTTTTGCTGTCGCATTCATCCCAAGTTTGATTTTCTGGTTTATGGA
TAACAAAGGACTTTACCAAGAGAATCCAGAAGTAATCATTGCATGGCATT
GCTCCTCAACAACATTCGCATTATCATCTGTTTGCAATCCGCTGTTCATG
CTGTATTATGCACCAGATTTCAAGAGAAGTTTCAAAAGTTTTAAAAAGCA
GTTGCAACGTACTCTAACGGGAGAGACAACAACAGCATCAGAGATAGTAT
CGGAGAATACTGATGAAAATAGAAATAACACCAGTGGTAAATACATTGTG
AATGGAGAAACAACAGCATCAGAGATGATTGGTGAAGTTTATTGTCATGT
ATGGAAGAACTTTTACAACAATCCCACATTTACAGTTCAATATCATGTCT
GGATTCTAGTTTTGGATACAATACTTGTTGTATTGATTGCCATTTTGTGG
ATCTCGACGATGTTCACTTCATGTTCCGCTATCAAGAAGTCATTTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000089XLOC_000089Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000155-proteinTCONS_00000155-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000155-exon-sc0000001-1575043694:382982..383156TCONS_00000155-exon-sc0000001-1575043694:382982..383156Clytia hemisphaericaexon
TCONS_00000155-exon-sc0000001-1575043694:380905..381332TCONS_00000155-exon-sc0000001-1575043694:380905..381332Clytia hemisphaericaexon
TCONS_00000155-exon-sc0000001-1510915933:382982..383156TCONS_00000155-exon-sc0000001-1510915933:382982..383156Clytia hemisphaericaexon
TCONS_00000155-exon-sc0000001-1510915933:380905..381332TCONS_00000155-exon-sc0000001-1510915933:380905..381332Clytia hemisphaericaexon
TCONS_00000155-exon-sc0000001-1491911889:382982..383156TCONS_00000155-exon-sc0000001-1491911889:382982..383156Clytia hemisphaericaexon
TCONS_00000155-exon-sc0000001-1491911889:380905..381332TCONS_00000155-exon-sc0000001-1491911889:380905..381332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:380905..383156 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.270135 0.263424 0.305861 0.199491 0 0 0 0 0 0 0 0 1.01806 0.559731 0.255653 0.109742 0.337982 0.692842 0.28716 0.801312 0.261182 0.127395 0.309732 0.469318 0.290032 0.0862822 0 0 0.099943 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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