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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000152 ID=TCONS_00000152|Name=TCONS_00000152|organism=Clytia hemisphaerica|type=transcript|length=2115bpRun BLAST on NCBI protein sequence of TCONS_00000152-protein >TCONS_00000152-protein ID=TCONS_00000152-protein|Name=TCONS_00000152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp MKTFTFIPNHPFYRSLKTFIMKFEYLESLITVSKQEGVISWAEITITLVCRun BLAST on NCBI transcript from alignment at sc0000001:333911..344253- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000152 ID=TCONS_00000152|Name=TCONS_00000152|organism=Clytia hemisphaerica|type=transcript|length=10343bp|location=Sequence derived from alignment at sc0000001:333911..344253- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:333911..344253- >TCONS_00000152 ID=TCONS_00000152|Name=TCONS_00000152|organism=Clytia hemisphaerica|type=CDS|length=11448bp|location=Sequence derived from alignment at sc0000001:333911..344253- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000152 vs. Swiss-Prot (Human)
Match: ABHD1 (Protein ABHD1 OS=Homo sapiens GN=ABHD1 PE=1 SV=2) HSP 1 Score: 191.43 bits (485), Expect = 1.620e-53 Identity = 112/371 (30.19%), Postives = 185/371 (49.87%), Query Frame = 2
Query: 254 YYLTQVVHKPKLFCKPGLWCETLKEHLKELENDQWPLLWCFWPLWQAAFHTLLMKPQHFDFERKEIETEDGGSFTLDFYGFEEDNEDNE--TKPILLILPGATGHSGKVYVREFISIALNRKYRAIGLNFRGWGRGVRLKTEKVSCVGNLSEIKAAFKHITKEHPNAPIMVIASSIGAVTFTNYLARESNKINQNIRAVMLLGVPWDPMESKARLSEFWINLVVNKHMTQNMINHVKRNNAVVEDSVQTLGIDLEEVYQSQTVWDFDDRYLCPLYGYKDHMEYYKDVGIVSLPLEKITVPVLALCTEDDPLCRGKAIPLQKIMTNSLLAVVTTKFGGHLTWLEGIMPTYKRFPHRVFEQYVDIFFGETKSV 1360
YY V+ +P+L P + L+ H +P LWCF Q+ F LL ++ ++T DGG LD+ + ++D + T+PI+L+LPG TG S YV ++ AL Y+A+ N RG RG L+T + C N +++ HI +P AP++ + S G + N+LA+ + A + L WD E+ L +L+ N+ +T + V+RN V+E V D++ V Q++T+ FD+RY +GY+D + YYK + ++ I +PVL L DDP A+P+Q + +A++ T GGH+ +LEG++P + R+ QY F + + +
Sbjct: 31 YYWACVLQRPRLVAGPQ-FLAFLEPHCSITTETFYPTLWCFEGRLQSIFQVLLQSQPLVLYQSDILQTPDGGQLLLDWAKQPDSSQDPDPTTQPIVLLLPGITGSSQDTYVLHLVNQALRDGYQAVVFNNRGC-RGEELRTHRAFCASNTEDLETVVNHIKHRYPQAPLLAVGISFGGILVLNHLAQARQAAG--LVAALTLSACWDSFETTRSLETPLNSLLFNQPLTAGLCQLVERNRKVIEKVV-----DIDFVLQARTIRQFDERYTSVAFGYQDCVTYYKAASPRT-KIDAIRIPVLYLSAADDPFSPVCALPIQAAQHSPYVALLITARGGHIGFLEGLLPWQHWYMSRLLHQYAKAIFQDPEGL 391 The following BLAST results are available for this feature:
BLAST of TCONS_00000152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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